data_8JL4 # _model_server_result.job_id kU83MVBaji-5Nfh0c5kDBw _model_server_result.datetime_utc '2025-07-09 00:29:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jl4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"LB","auth_seq_id":819}' # _entry.id 8JL4 # _exptl.entry_id 8JL4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 114.229 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-OCTANE _entity.pdbx_number_of_molecules 32 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JL4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JL4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 N N N ? 7 P N N ? 7 R N N ? 7 U N N ? 7 X N N ? 7 Y N N ? 7 Z N N ? 7 CA N N ? 7 DA N N ? 7 KA N N ? 7 LA N N ? 7 NA N N ? 7 OA N N ? 7 PA N N ? 7 QA N N ? 7 RA N N ? 7 BB N N ? 7 DB N N ? 7 FB N N ? 7 IB N N ? 7 LB N N ? 7 MB N N ? 7 NB N N ? 7 QB N N ? 7 RB N N ? 7 YB N N ? 7 ZB N N ? 7 BC N N ? 7 CC N N ? 7 DC N N ? 7 EC N N ? 7 FC N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG A 801 NAG 2 n C NAG 2 C 2 NAG A 802 NAG 2 n D NAG 1 D 1 NAG A 803 NAG 2 n D NAG 2 D 2 NAG A 804 NAG 2 n E NAG 1 E 1 NAG B 801 NAG 2 n E NAG 2 E 2 NAG B 802 NAG 2 n F NAG 1 F 1 NAG B 803 NAG 2 n F NAG 2 F 2 NAG B 804 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 104 A CYS 104 1_555 A SG CYS 107 A CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 151 A CYS 151 1_555 A SG CYS 179 A CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 443 A CYS 443 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 104 B CYS 104 1_555 B SG CYS 107 B CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 151 B CYS 151 1_555 B SG CYS 179 B CYS 179 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 443 B CYS 443 1_555 B SG CYS 462 B CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A ND2 ASN 94 A ASN 94 1_555 I C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 A ND2 ASN 142 A ASN 142 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 162 A ASN 162 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B ND2 ASN 94 B ASN 94 1_555 WA C1 NAG . B NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale5 B ND2 ASN 142 B ASN 142 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 162 B ASN 162 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale7 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale8 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale9 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? covale ? covale10 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? # _chem_comp.formula 'C8 H18' _chem_comp.formula_weight 114.229 _chem_comp.id OCT _chem_comp.mon_nstd_flag . _chem_comp.name N-OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 OCT sing 561 n n C1 H11 OCT sing 562 n n C1 H12 OCT sing 563 n n C1 H13 OCT sing 564 n n C2 C3 OCT sing 565 n n C2 H21 OCT sing 566 n n C2 H22 OCT sing 567 n n C3 C4 OCT sing 568 n n C3 H31 OCT sing 569 n n C3 H32 OCT sing 570 n n C4 C5 OCT sing 571 n n C4 H41 OCT sing 572 n n C4 H42 OCT sing 573 n n C5 C6 OCT sing 574 n n C5 H51 OCT sing 575 n n C5 H52 OCT sing 576 n n C6 C7 OCT sing 577 n n C6 H61 OCT sing 578 n n C6 H62 OCT sing 579 n n C7 C8 OCT sing 580 n n C7 H71 OCT sing 581 n n C7 H72 OCT sing 582 n n C8 H81 OCT sing 583 n n C8 H82 OCT sing 584 n n C8 H83 OCT sing 585 n n # _atom_sites.entry_id 8JL4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 3 UV6 A 1 801 701 UV6 LIG . H 4 COA A 1 802 702 COA COA . I 5 NAG A 1 803 800 NAG NAG . J 6 C14 A 1 804 901 C14 C14 . K 6 C14 A 1 805 902 C14 C14 . L 6 C14 A 1 806 903 C14 C14 . M 6 C14 A 1 807 904 C14 C14 . N 7 OCT A 1 808 905 OCT OCT . O 6 C14 A 1 809 906 C14 C14 . P 7 OCT A 1 810 907 OCT OCT . Q 8 CLR A 1 811 908 CLR CLR . R 7 OCT A 1 812 909 OCT OCT . S 6 C14 A 1 813 910 C14 C14 . T 6 C14 A 1 814 911 C14 C14 . U 7 OCT A 1 815 912 OCT OCT . V 9 D10 A 1 816 913 D10 D10 . W 10 D12 A 1 817 914 D12 D12 . X 7 OCT A 1 818 915 OCT OCT . Y 7 OCT A 1 819 916 OCT OCT . Z 7 OCT A 1 820 917 OCT OCT . AA 6 C14 A 1 821 918 C14 C14 . BA 11 HP6 A 1 822 919 HP6 HP6 . CA 7 OCT A 1 823 921 OCT OCT . DA 7 OCT A 1 824 922 OCT OCT . EA 6 C14 A 1 825 923 C14 C14 . FA 10 D12 A 1 826 924 D12 D12 . GA 8 CLR A 1 827 925 CLR CLR . HA 6 C14 A 1 828 926 C14 C14 . IA 6 C14 A 1 829 927 C14 C14 . JA 6 C14 A 1 830 928 C14 C14 . KA 7 OCT A 1 831 930 OCT OCT . LA 7 OCT A 1 832 931 OCT OCT . MA 12 R16 A 1 833 932 R16 R16 . NA 7 OCT A 1 834 933 OCT OCT . OA 7 OCT A 1 835 934 OCT OCT . PA 7 OCT A 1 836 935 OCT OCT . QA 7 OCT A 1 837 936 OCT OCT . RA 7 OCT A 1 838 937 OCT OCT . SA 10 D12 A 1 839 920 D12 D12 . TA 10 D12 B 1 801 920 D12 D12 . UA 3 UV6 B 1 802 701 UV6 LIG . VA 4 COA B 1 803 702 COA COA . WA 5 NAG B 1 804 800 NAG NAG . XA 6 C14 B 1 805 901 C14 C14 . YA 6 C14 B 1 806 902 C14 C14 . ZA 6 C14 B 1 807 903 C14 C14 . AB 6 C14 B 1 808 904 C14 C14 . BB 7 OCT B 1 809 905 OCT OCT . CB 6 C14 B 1 810 906 C14 C14 . DB 7 OCT B 1 811 907 OCT OCT . EB 8 CLR B 1 812 908 CLR CLR . FB 7 OCT B 1 813 909 OCT OCT . GB 6 C14 B 1 814 910 C14 C14 . HB 6 C14 B 1 815 911 C14 C14 . IB 7 OCT B 1 816 912 OCT OCT . JB 9 D10 B 1 817 913 D10 D10 . KB 10 D12 B 1 818 914 D12 D12 . LB 7 OCT B 1 819 915 OCT OCT . MB 7 OCT B 1 820 916 OCT OCT . NB 7 OCT B 1 821 917 OCT OCT . OB 6 C14 B 1 822 918 C14 C14 . PB 11 HP6 B 1 823 919 HP6 HP6 . QB 7 OCT B 1 824 921 OCT OCT . RB 7 OCT B 1 825 922 OCT OCT . SB 6 C14 B 1 826 923 C14 C14 . TB 10 D12 B 1 827 924 D12 D12 . UB 8 CLR B 1 828 925 CLR CLR . VB 6 C14 B 1 829 926 C14 C14 . WB 6 C14 B 1 830 927 C14 C14 . XB 6 C14 B 1 831 928 C14 C14 . YB 7 OCT B 1 832 930 OCT OCT . ZB 7 OCT B 1 833 931 OCT OCT . AC 12 R16 B 1 834 932 R16 R16 . BC 7 OCT B 1 835 933 OCT OCT . CC 7 OCT B 1 836 934 OCT OCT . DC 7 OCT B 1 837 935 OCT OCT . EC 7 OCT B 1 838 936 OCT OCT . FC 7 OCT B 1 839 937 OCT OCT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OCT . . . LB 7 161.274 185.49 167.067 1 39.06 ? C1 OCT 819 B 1 HETATM 2 C C2 OCT . . . LB 7 160.872 185.446 165.601 1 43.48 ? C2 OCT 819 B 1 HETATM 3 C C3 OCT . . . LB 7 161.743 186.345 164.735 1 44.76 ? C3 OCT 819 B 1 HETATM 4 C C4 OCT . . . LB 7 161.63 186.06 163.244 1 43.22 ? C4 OCT 819 B 1 HETATM 5 C C5 OCT . . . LB 7 160.405 186.679 162.581 1 42 ? C5 OCT 819 B 1 HETATM 6 C C6 OCT . . . LB 7 160.638 187.015 161.114 1 47.31 ? C6 OCT 819 B 1 HETATM 7 C C7 OCT . . . LB 7 159.371 187.367 160.347 1 46.42 ? C7 OCT 819 B 1 HETATM 8 C C8 OCT . . . LB 7 159.63 187.574 158.86 1 40.91 ? C8 OCT 819 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #