data_8JLC # _model_server_result.job_id VQ5cPQcXYk_qyM1U8zx7iw _model_server_result.datetime_utc '2025-04-22 16:29:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jlc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":803}' # _entry.id 8JLC # _exptl.entry_id 8JLC _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 170.209 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S)-2-(2-oxidanylidenepyrrolidin-1-yl)butanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JLC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JLC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 F 1 NAG A 902 NAG 3 n C NAG 2 F 2 NAG A 903 NAG 3 n C FUC 3 F 3 FUC A 904 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 506 A ASN 498 1_555 D C1 NAG . A NAG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.665 ? covale ? covale2 A ND2 ASN 556 A ASN 548 1_555 E C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.546 ? covale ? covale3 A ND2 ASN 581 A ASN 573 1_555 C C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale4 C O4 NAG . F NAG 1 1_555 C C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale5 C O6 NAG . F NAG 1 1_555 C C1 FUC . F FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? # _chem_comp.formula 'C8 H14 N2 O2' _chem_comp.formula_weight 170.209 _chem_comp.id UKX _chem_comp.mon_nstd_flag . _chem_comp.name (2S)-2-(2-oxidanylidenepyrrolidin-1-yl)butanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms levetiracetam # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 UKX doub 409 n n O2 C5 UKX doub 410 n n N1 C1 UKX sing 411 n n N1 C4 UKX sing 412 n n N1 C6 UKX sing 413 n n C1 C2 UKX sing 414 n n C2 C3 UKX sing 415 n n C3 C4 UKX sing 416 n n C5 N2 UKX sing 417 n n C6 C7 UKX sing 418 n n C7 C8 UKX sing 419 n n C6 C5 UKX sing 420 n n C2 H1 UKX sing 421 n n C2 H2 UKX sing 422 n n C3 H3 UKX sing 423 n n C4 H4 UKX sing 424 n n C6 H5 UKX sing 425 n n C7 H6 UKX sing 426 n n C7 H7 UKX sing 427 n n C8 H8 UKX sing 428 n n C8 H9 UKX sing 429 n n C8 H10 UKX sing 430 n n N2 H11 UKX sing 431 n n N2 H12 UKX sing 432 n n C4 H13 UKX sing 433 n n C3 H14 UKX sing 434 n n # _atom_sites.entry_id 8JLC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NAG A 1 801 900 NAG NAG . E 4 NAG A 1 802 901 NAG NAG . F 5 UKX A 1 803 801 UKX LVC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 UKX . . . F 5 127.838 121.692 140.781 1 132.21 ? O1 UKX 803 A 1 HETATM 2 O O2 UKX . . . F 5 127.688 121.81 145.086 1 55.64 ? O2 UKX 803 A 1 HETATM 3 N N1 UKX . . . F 5 126.277 122 142.424 1 100.79 ? N1 UKX 803 A 1 HETATM 4 C C1 UKX . . . F 5 126.828 121.342 141.325 1 109.91 ? C1 UKX 803 A 1 HETATM 5 C C2 UKX . . . F 5 125.919 120.13 140.876 1 97.93 ? C2 UKX 803 A 1 HETATM 6 C C3 UKX . . . F 5 124.749 120.103 141.864 1 95.17 ? C3 UKX 803 A 1 HETATM 7 C C4 UKX . . . F 5 125.067 121.277 142.924 1 119.01 ? C4 UKX 803 A 1 HETATM 8 C C5 UKX . . . F 5 127.952 122.534 144.146 1 89.3 ? C5 UKX 803 A 1 HETATM 9 C C6 UKX . . . F 5 126.742 123.103 143.081 1 85.23 ? C6 UKX 803 A 1 HETATM 10 C C7 UKX . . . F 5 125.721 123.767 144.049 1 100.32 ? C7 UKX 803 A 1 HETATM 11 C C8 UKX . . . F 5 125.725 125.293 143.954 1 114.85 ? C8 UKX 803 A 1 HETATM 12 N N2 UKX . . . F 5 129.266 122.89 143.904 1 59.52 ? N2 UKX 803 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 12 #