data_8JM1 # _model_server_result.job_id FL9mxqQI3CRA3okmycq39Q _model_server_result.datetime_utc '2024-10-10 16:26:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jm1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8JM1 # _exptl.entry_id 8JM1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JM1 _cell.length_a 49.711 _cell.length_b 91.485 _cell.length_c 131.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JM1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 408 A CYS 400 1_555 A SG CYS 459 A CYS 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? covale ? covale1 A ND2 ASN 25 A ASN 17 1_555 B C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale2 A ND2 ASN 126 A ASN 118 1_555 C C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A ND2 ASN 143 A ASN 135 1_555 D C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale4 A ND2 ASN 159 A ASN 151 1_555 E C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale5 A ND2 ASN 199 A ASN 191 1_555 F C1 NAG . A NAG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale6 A ND2 ASN 290 A ASN 282 1_555 G C1 NAG . A NAG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale7 A ND2 ASN 383 A ASN 375 1_555 H C1 NAG . A NAG 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale8 A ND2 ASN 401 A ASN 393 1_555 I C1 NAG . A NAG 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 387 n n C1 O1 NAG sing 388 n n C1 O5 NAG sing 389 n n C1 H1 NAG sing 390 n n C2 C3 NAG sing 391 n n C2 N2 NAG sing 392 n n C2 H2 NAG sing 393 n n C3 C4 NAG sing 394 n n C3 O3 NAG sing 395 n n C3 H3 NAG sing 396 n n C4 C5 NAG sing 397 n n C4 O4 NAG sing 398 n n C4 H4 NAG sing 399 n n C5 C6 NAG sing 400 n n C5 O5 NAG sing 401 n n C5 H5 NAG sing 402 n n C6 O6 NAG sing 403 n n C6 H61 NAG sing 404 n n C6 H62 NAG sing 405 n n C7 C8 NAG sing 406 n n C7 N2 NAG sing 407 n n C7 O7 NAG doub 408 n n C8 H81 NAG sing 409 n n C8 H82 NAG sing 410 n n C8 H83 NAG sing 411 n n N2 HN2 NAG sing 412 n n O1 HO1 NAG sing 413 n n O3 HO3 NAG sing 414 n n O4 HO4 NAG sing 415 n n O6 HO6 NAG sing 416 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8JM1 _atom_sites.fract_transf_matrix[1][1] 0.020116 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007612 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 601 520 NAG NAG . C 2 NAG A 1 602 521 NAG NAG . D 2 NAG A 1 603 522 NAG NAG . E 2 NAG A 1 604 523 NAG NAG . F 2 NAG A 1 605 524 NAG NAG . G 2 NAG A 1 606 525 NAG NAG . H 2 NAG A 1 607 526 NAG NAG . I 2 NAG A 1 608 527 NAG NAG . J 3 FQ3 A 1 609 528 FQ3 LIG . K 4 FAD A 1 610 1 FAD FAD . L 5 EDO A 1 611 1 EDO EDO . M 5 EDO A 1 612 2 EDO EDO . N 6 PEG A 1 613 1 PEG PEG . O 7 BCN A 1 614 1 BCN BCN . P 8 HOH A 1 701 182 HOH HOH . P 8 HOH A 2 702 59 HOH HOH . P 8 HOH A 3 703 55 HOH HOH . P 8 HOH A 4 704 166 HOH HOH . P 8 HOH A 5 705 47 HOH HOH . P 8 HOH A 6 706 126 HOH HOH . P 8 HOH A 7 707 32 HOH HOH . P 8 HOH A 8 708 170 HOH HOH . P 8 HOH A 9 709 70 HOH HOH . P 8 HOH A 10 710 104 HOH HOH . P 8 HOH A 11 711 31 HOH HOH . P 8 HOH A 12 712 162 HOH HOH . P 8 HOH A 13 713 4 HOH HOH . P 8 HOH A 14 714 177 HOH HOH . P 8 HOH A 15 715 71 HOH HOH . P 8 HOH A 16 716 13 HOH HOH . P 8 HOH A 17 717 88 HOH HOH . P 8 HOH A 18 718 65 HOH HOH . P 8 HOH A 19 719 190 HOH HOH . P 8 HOH A 20 720 81 HOH HOH . P 8 HOH A 21 721 141 HOH HOH . P 8 HOH A 22 722 98 HOH HOH . P 8 HOH A 23 723 29 HOH HOH . P 8 HOH A 24 724 15 HOH HOH . P 8 HOH A 25 725 75 HOH HOH . P 8 HOH A 26 726 148 HOH HOH . P 8 HOH A 27 727 26 HOH HOH . P 8 HOH A 28 728 48 HOH HOH . P 8 HOH A 29 729 109 HOH HOH . P 8 HOH A 30 730 10 HOH HOH . P 8 HOH A 31 731 36 HOH HOH . P 8 HOH A 32 732 76 HOH HOH . P 8 HOH A 33 733 7 HOH HOH . P 8 HOH A 34 734 1 HOH HOH . P 8 HOH A 35 735 52 HOH HOH . P 8 HOH A 36 736 45 HOH HOH . P 8 HOH A 37 737 23 HOH HOH . P 8 HOH A 38 738 38 HOH HOH . P 8 HOH A 39 739 95 HOH HOH . P 8 HOH A 40 740 120 HOH HOH . P 8 HOH A 41 741 43 HOH HOH . P 8 HOH A 42 742 83 HOH HOH . P 8 HOH A 43 743 67 HOH HOH . P 8 HOH A 44 744 9 HOH HOH . P 8 HOH A 45 745 94 HOH HOH . P 8 HOH A 46 746 19 HOH HOH . P 8 HOH A 47 747 64 HOH HOH . P 8 HOH A 48 748 39 HOH HOH . P 8 HOH A 49 749 106 HOH HOH . P 8 HOH A 50 750 12 HOH HOH . P 8 HOH A 51 751 66 HOH HOH . P 8 HOH A 52 752 3 HOH HOH . P 8 HOH A 53 753 62 HOH HOH . P 8 HOH A 54 754 77 HOH HOH . P 8 HOH A 55 755 37 HOH HOH . P 8 HOH A 56 756 152 HOH HOH . P 8 HOH A 57 757 110 HOH HOH . P 8 HOH A 58 758 136 HOH HOH . P 8 HOH A 59 759 178 HOH HOH . P 8 HOH A 60 760 150 HOH HOH . P 8 HOH A 61 761 138 HOH HOH . P 8 HOH A 62 762 112 HOH HOH . P 8 HOH A 63 763 97 HOH HOH . P 8 HOH A 64 764 35 HOH HOH . P 8 HOH A 65 765 33 HOH HOH . P 8 HOH A 66 766 130 HOH HOH . P 8 HOH A 67 767 40 HOH HOH . P 8 HOH A 68 768 91 HOH HOH . P 8 HOH A 69 769 122 HOH HOH . P 8 HOH A 70 770 175 HOH HOH . P 8 HOH A 71 771 16 HOH HOH . P 8 HOH A 72 772 184 HOH HOH . P 8 HOH A 73 773 27 HOH HOH . P 8 HOH A 74 774 82 HOH HOH . P 8 HOH A 75 775 8 HOH HOH . P 8 HOH A 76 776 21 HOH HOH . P 8 HOH A 77 777 96 HOH HOH . P 8 HOH A 78 778 20 HOH HOH . P 8 HOH A 79 779 172 HOH HOH . P 8 HOH A 80 780 78 HOH HOH . P 8 HOH A 81 781 17 HOH HOH . P 8 HOH A 82 782 168 HOH HOH . P 8 HOH A 83 783 25 HOH HOH . P 8 HOH A 84 784 42 HOH HOH . P 8 HOH A 85 785 30 HOH HOH . P 8 HOH A 86 786 151 HOH HOH . P 8 HOH A 87 787 105 HOH HOH . P 8 HOH A 88 788 46 HOH HOH . P 8 HOH A 89 789 6 HOH HOH . P 8 HOH A 90 790 149 HOH HOH . P 8 HOH A 91 791 51 HOH HOH . P 8 HOH A 92 792 171 HOH HOH . P 8 HOH A 93 793 50 HOH HOH . P 8 HOH A 94 794 93 HOH HOH . P 8 HOH A 95 795 84 HOH HOH . P 8 HOH A 96 796 100 HOH HOH . P 8 HOH A 97 797 63 HOH HOH . P 8 HOH A 98 798 11 HOH HOH . P 8 HOH A 99 799 58 HOH HOH . P 8 HOH A 100 800 28 HOH HOH . P 8 HOH A 101 801 143 HOH HOH . P 8 HOH A 102 802 194 HOH HOH . P 8 HOH A 103 803 185 HOH HOH . P 8 HOH A 104 804 129 HOH HOH . P 8 HOH A 105 805 113 HOH HOH . P 8 HOH A 106 806 69 HOH HOH . P 8 HOH A 107 807 134 HOH HOH . P 8 HOH A 108 808 22 HOH HOH . P 8 HOH A 109 809 24 HOH HOH . P 8 HOH A 110 810 139 HOH HOH . P 8 HOH A 111 811 49 HOH HOH . P 8 HOH A 112 812 128 HOH HOH . P 8 HOH A 113 813 157 HOH HOH . P 8 HOH A 114 814 34 HOH HOH . P 8 HOH A 115 815 54 HOH HOH . P 8 HOH A 116 816 60 HOH HOH . P 8 HOH A 117 817 125 HOH HOH . P 8 HOH A 118 818 111 HOH HOH . P 8 HOH A 119 819 193 HOH HOH . P 8 HOH A 120 820 53 HOH HOH . P 8 HOH A 121 821 41 HOH HOH . P 8 HOH A 122 822 5 HOH HOH . P 8 HOH A 123 823 87 HOH HOH . P 8 HOH A 124 824 191 HOH HOH . P 8 HOH A 125 825 153 HOH HOH . P 8 HOH A 126 826 101 HOH HOH . P 8 HOH A 127 827 188 HOH HOH . P 8 HOH A 128 828 156 HOH HOH . P 8 HOH A 129 829 142 HOH HOH . P 8 HOH A 130 830 169 HOH HOH . P 8 HOH A 131 831 174 HOH HOH . P 8 HOH A 132 832 116 HOH HOH . P 8 HOH A 133 833 89 HOH HOH . P 8 HOH A 134 834 137 HOH HOH . P 8 HOH A 135 835 163 HOH HOH . P 8 HOH A 136 836 154 HOH HOH . P 8 HOH A 137 837 107 HOH HOH . P 8 HOH A 138 838 189 HOH HOH . P 8 HOH A 139 839 131 HOH HOH . P 8 HOH A 140 840 165 HOH HOH . P 8 HOH A 141 841 155 HOH HOH . P 8 HOH A 142 842 176 HOH HOH . P 8 HOH A 143 843 127 HOH HOH . P 8 HOH A 144 844 44 HOH HOH . P 8 HOH A 145 845 187 HOH HOH . P 8 HOH A 146 846 85 HOH HOH . P 8 HOH A 147 847 123 HOH HOH . P 8 HOH A 148 848 186 HOH HOH . P 8 HOH A 149 849 90 HOH HOH . P 8 HOH A 150 850 140 HOH HOH . P 8 HOH A 151 851 68 HOH HOH . P 8 HOH A 152 852 115 HOH HOH . P 8 HOH A 153 853 80 HOH HOH . P 8 HOH A 154 854 167 HOH HOH . P 8 HOH A 155 855 146 HOH HOH . P 8 HOH A 156 856 192 HOH HOH . P 8 HOH A 157 857 61 HOH HOH . P 8 HOH A 158 858 57 HOH HOH . P 8 HOH A 159 859 72 HOH HOH . P 8 HOH A 160 860 133 HOH HOH . P 8 HOH A 161 861 173 HOH HOH . P 8 HOH A 162 862 159 HOH HOH . P 8 HOH A 163 863 181 HOH HOH . P 8 HOH A 164 864 79 HOH HOH . P 8 HOH A 165 865 164 HOH HOH . P 8 HOH A 166 866 132 HOH HOH . P 8 HOH A 167 867 158 HOH HOH . P 8 HOH A 168 868 135 HOH HOH . P 8 HOH A 169 869 119 HOH HOH . P 8 HOH A 170 870 124 HOH HOH . P 8 HOH A 171 871 108 HOH HOH . P 8 HOH A 172 872 56 HOH HOH . P 8 HOH A 173 873 180 HOH HOH . P 8 HOH A 174 874 73 HOH HOH . P 8 HOH A 175 875 92 HOH HOH . P 8 HOH A 176 876 114 HOH HOH . P 8 HOH A 177 877 145 HOH HOH . P 8 HOH A 178 878 74 HOH HOH . P 8 HOH A 179 879 14 HOH HOH . P 8 HOH A 180 880 18 HOH HOH . P 8 HOH A 181 881 117 HOH HOH . P 8 HOH A 182 882 147 HOH HOH . P 8 HOH A 183 883 2 HOH HOH . P 8 HOH A 184 884 144 HOH HOH . P 8 HOH A 185 885 86 HOH HOH . P 8 HOH A 186 886 118 HOH HOH . P 8 HOH A 187 887 183 HOH HOH . P 8 HOH A 188 888 161 HOH HOH . P 8 HOH A 189 889 103 HOH HOH . P 8 HOH A 190 890 121 HOH HOH . P 8 HOH A 191 891 160 HOH HOH . P 8 HOH A 192 892 102 HOH HOH . P 8 HOH A 193 893 179 HOH HOH . P 8 HOH A 194 894 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 19.966 -9.085 9.234 1 37.22 ? C1 NAG 601 A 1 HETATM 2 C C2 NAG . . . B 2 20.346 -7.596 9.103 1 40.92 ? C2 NAG 601 A 1 HETATM 3 C C3 NAG . . . B 2 21.843 -7.408 9.325 1 40.62 ? C3 NAG 601 A 1 HETATM 4 C C4 NAG . . . B 2 22.242 -7.987 10.674 1 38.01 ? C4 NAG 601 A 1 HETATM 5 C C5 NAG . . . B 2 21.817 -9.45 10.783 1 38.18 ? C5 NAG 601 A 1 HETATM 6 C C6 NAG . . . B 2 22.063 -10.013 12.166 1 35.35 ? C6 NAG 601 A 1 HETATM 7 C C7 NAG . . . B 2 18.866 -6.273 7.667 1 43.97 ? C7 NAG 601 A 1 HETATM 8 C C8 NAG . . . B 2 18.587 -5.795 6.272 1 41.74 ? C8 NAG 601 A 1 HETATM 9 N N2 NAG . . . B 2 19.943 -7.054 7.816 1 40.24 ? N2 NAG 601 A 1 HETATM 10 O O3 NAG . . . B 2 22.16 -6.02 9.273 1 41.34 ? O3 NAG 601 A 1 HETATM 11 O O4 NAG . . . B 2 23.652 -7.906 10.824 1 41.36 ? O4 NAG 601 A 1 HETATM 12 O O5 NAG . . . B 2 20.41 -9.593 10.514 1 38.76 ? O5 NAG 601 A 1 HETATM 13 O O6 NAG . . . B 2 21.901 -11.425 12.188 1 39.9 ? O6 NAG 601 A 1 HETATM 14 O O7 NAG . . . B 2 18.145 -5.967 8.62 1 44.97 ? O7 NAG 601 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #