data_8JMX # _model_server_result.job_id Y0bUSegrQSwZIwvcJKvC0w _model_server_result.datetime_utc '2024-11-22 22:42:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jmx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8JMX # _exptl.entry_id 8JMX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 324.334 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(4-morpholin-4-yl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)-2-oxidanyl-benzaldehyde _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8JMX _cell.length_a 83.133 _cell.length_b 83.133 _cell.length_c 171.452 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JMX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall 'P 61 2 (x,y,z+5/12)' _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 36 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 162 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C17 _struct_conn.ptnr2_label_comp_id E47 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id E47 _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.469 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H16 N4 O3' _chem_comp.formula_weight 324.334 _chem_comp.id E47 _chem_comp.mon_nstd_flag . _chem_comp.name 5-(4-morpholin-4-yl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)-2-oxidanyl-benzaldehyde _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C4 E47 sing 83 n n O1 C1 E47 sing 84 n n C4 C3 E47 sing 85 n n C1 C2 E47 sing 86 n n C3 N1 E47 sing 87 n n C2 N1 E47 sing 88 n n N1 C5 E47 sing 89 n n N2 C5 E47 doub 90 n y N2 C6 E47 sing 91 n y C5 C8 E47 sing 92 n y O2 C14 E47 sing 93 n n C15 C14 E47 doub 94 n y C15 C16 E47 sing 95 n y C6 N3 E47 doub 96 n y C14 C13 E47 sing 97 n y C16 C11 E47 doub 98 n y C8 C10 E47 sing 99 n y C8 C7 E47 doub 100 n y C13 C17 E47 sing 101 n n C13 C12 E47 doub 102 n y C11 C12 E47 sing 103 n y C11 C10 E47 sing 104 n n N3 C7 E47 sing 105 n y C10 C9 E47 doub 106 n y C7 N4 E47 sing 107 n y C9 N4 E47 sing 108 n y C4 H7 E47 sing 109 n n C4 H8 E47 sing 110 n n C6 H9 E47 sing 111 n n C15 H13 E47 sing 112 n n C17 H16 E47 sing 113 n n C1 H2 E47 sing 114 n n C1 H1 E47 sing 115 n n C2 H3 E47 sing 116 n n C2 H4 E47 sing 117 n n C3 H6 E47 sing 118 n n C3 H5 E47 sing 119 n n N4 H10 E47 sing 120 n n C9 H11 E47 sing 121 n n C12 H12 E47 sing 122 n n C16 H14 E47 sing 123 n n O2 H15 E47 sing 124 n n C17 O3 E47 doub 125 n n # _atom_sites.entry_id 8JMX _atom_sites.fract_transf_matrix[1][1] 0.012029 _atom_sites.fract_transf_matrix[1][2] 0.006945 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01389 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005833 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id E47 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 401 _pdbx_nonpoly_scheme.pdb_mon_id E47 _pdbx_nonpoly_scheme.auth_mon_id LIG _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 E47 . . . B 2 3.441 30.613 4.157 0.93 59.89 ? N1 E47 401 A 1 HETATM 2 N N3 E47 . . . B 2 1.267 32.512 7.371 0.93 63.63 ? N3 E47 401 A 1 HETATM 3 C C4 E47 . . . B 2 3.064 30.759 1.902 0.93 64.92 ? C4 E47 401 A 1 HETATM 4 C C5 E47 . . . B 2 2.786 31.212 5.29 0.93 63.11 ? C5 E47 401 A 1 HETATM 5 C C6 E47 . . . B 2 1.183 32.789 6.039 0.93 61.44 ? C6 E47 401 A 1 HETATM 6 C C7 E47 . . . B 2 2.139 31.553 7.629 0.93 62.52 ? C7 E47 401 A 1 HETATM 7 C C8 E47 . . . B 2 2.96 30.845 6.626 0.93 60.68 ? C8 E47 401 A 1 HETATM 8 C C10 E47 . . . B 2 3.648 29.915 7.507 0.93 67.25 ? C10 E47 401 A 1 HETATM 9 C C13 E47 . . . B 2 6.191 26.956 6.837 0.93 68.36 ? C13 E47 401 A 1 HETATM 10 C C15 E47 . . . B 2 6.93 29.063 5.728 0.93 62.75 ? C15 E47 401 A 1 HETATM 11 C C17 E47 . . . B 2 6.386 25.482 7.191 0.93 70.74 ? C17 E47 401 A 1 HETATM 12 O O1 E47 . . . B 2 3.705 29.533 1.59 0.93 70.92 ? O1 E47 401 A 1 HETATM 13 C C1 E47 . . . B 2 4.201 28.81 2.707 0.93 61.15 ? C1 E47 401 A 1 HETATM 14 C C2 E47 . . . B 2 3.584 29.191 4.051 0.93 58.57 ? C2 E47 401 A 1 HETATM 15 C C3 E47 . . . B 2 3.796 31.43 3.051 0.93 62.31 ? C3 E47 401 A 1 HETATM 16 N N2 E47 . . . B 2 1.884 32.196 5.014 0.93 63.17 ? N2 E47 401 A 1 HETATM 17 N N4 E47 . . . B 2 2.534 30.948 8.87 0.93 65.66 ? N4 E47 401 A 1 HETATM 18 C C9 E47 . . . B 2 3.438 30.012 8.797 0.93 62.26 ? C9 E47 401 A 1 HETATM 19 C C11 E47 . . . B 2 4.767 28.976 7.019 0.93 72.85 ? C11 E47 401 A 1 HETATM 20 C C12 E47 . . . B 2 4.953 27.678 7.368 0.93 70.93 ? C12 E47 401 A 1 HETATM 21 C C14 E47 . . . B 2 7.119 27.605 6.071 0.93 69.9 ? C14 E47 401 A 1 HETATM 22 C C16 E47 . . . B 2 5.836 29.697 6.2 0.93 66.88 ? C16 E47 401 A 1 HETATM 23 O O2 E47 . . . B 2 8.278 26.967 5.57 0.93 78.97 ? O2 E47 401 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 23 #