data_8JNQ # _model_server_result.job_id 9jEcSjo_8UuhWlLRZ4u3Lg _model_server_result.datetime_utc '2024-12-27 02:03:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jnq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8JNQ # _exptl.entry_id 8JNQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JNQ _cell.length_a 65.73 _cell.length_b 68.436 _cell.length_c 108.262 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JNQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 345 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 345 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.297 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JNQ _atom_sites.fract_transf_matrix[1][1] 0.015214 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009237 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EIU A 1 401 403 EIU 5OH . C 3 HEM A 1 402 404 HEM HEM . D 4 NA A 1 403 1 NA NA . E 5 HOH A 1 501 296 HOH HOH . E 5 HOH A 2 502 107 HOH HOH . E 5 HOH A 3 503 238 HOH HOH . E 5 HOH A 4 504 100 HOH HOH . E 5 HOH A 5 505 158 HOH HOH . E 5 HOH A 6 506 232 HOH HOH . E 5 HOH A 7 507 234 HOH HOH . E 5 HOH A 8 508 271 HOH HOH . E 5 HOH A 9 509 219 HOH HOH . E 5 HOH A 10 510 185 HOH HOH . E 5 HOH A 11 511 145 HOH HOH . E 5 HOH A 12 512 116 HOH HOH . E 5 HOH A 13 513 218 HOH HOH . E 5 HOH A 14 514 33 HOH HOH . E 5 HOH A 15 515 236 HOH HOH . E 5 HOH A 16 516 241 HOH HOH . E 5 HOH A 17 517 189 HOH HOH . E 5 HOH A 18 518 295 HOH HOH . E 5 HOH A 19 519 192 HOH HOH . E 5 HOH A 20 520 93 HOH HOH . E 5 HOH A 21 521 22 HOH HOH . E 5 HOH A 22 522 79 HOH HOH . E 5 HOH A 23 523 274 HOH HOH . E 5 HOH A 24 524 59 HOH HOH . E 5 HOH A 25 525 130 HOH HOH . E 5 HOH A 26 526 76 HOH HOH . E 5 HOH A 27 527 253 HOH HOH . E 5 HOH A 28 528 156 HOH HOH . E 5 HOH A 29 529 161 HOH HOH . E 5 HOH A 30 530 52 HOH HOH . E 5 HOH A 31 531 240 HOH HOH . E 5 HOH A 32 532 248 HOH HOH . E 5 HOH A 33 533 15 HOH HOH . E 5 HOH A 34 534 291 HOH HOH . E 5 HOH A 35 535 119 HOH HOH . E 5 HOH A 36 536 249 HOH HOH . E 5 HOH A 37 537 227 HOH HOH . E 5 HOH A 38 538 83 HOH HOH . E 5 HOH A 39 539 273 HOH HOH . E 5 HOH A 40 540 90 HOH HOH . E 5 HOH A 41 541 196 HOH HOH . E 5 HOH A 42 542 85 HOH HOH . E 5 HOH A 43 543 44 HOH HOH . E 5 HOH A 44 544 82 HOH HOH . E 5 HOH A 45 545 38 HOH HOH . E 5 HOH A 46 546 262 HOH HOH . E 5 HOH A 47 547 206 HOH HOH . E 5 HOH A 48 548 21 HOH HOH . E 5 HOH A 49 549 37 HOH HOH . E 5 HOH A 50 550 164 HOH HOH . E 5 HOH A 51 551 150 HOH HOH . E 5 HOH A 52 552 102 HOH HOH . E 5 HOH A 53 553 56 HOH HOH . E 5 HOH A 54 554 49 HOH HOH . E 5 HOH A 55 555 75 HOH HOH . E 5 HOH A 56 556 78 HOH HOH . E 5 HOH A 57 557 193 HOH HOH . E 5 HOH A 58 558 28 HOH HOH . E 5 HOH A 59 559 269 HOH HOH . E 5 HOH A 60 560 114 HOH HOH . E 5 HOH A 61 561 173 HOH HOH . E 5 HOH A 62 562 117 HOH HOH . E 5 HOH A 63 563 42 HOH HOH . E 5 HOH A 64 564 275 HOH HOH . E 5 HOH A 65 565 20 HOH HOH . E 5 HOH A 66 566 151 HOH HOH . E 5 HOH A 67 567 251 HOH HOH . E 5 HOH A 68 568 122 HOH HOH . E 5 HOH A 69 569 77 HOH HOH . E 5 HOH A 70 570 109 HOH HOH . E 5 HOH A 71 571 184 HOH HOH . E 5 HOH A 72 572 58 HOH HOH . E 5 HOH A 73 573 7 HOH HOH . E 5 HOH A 74 574 118 HOH HOH . E 5 HOH A 75 575 199 HOH HOH . E 5 HOH A 76 576 48 HOH HOH . E 5 HOH A 77 577 87 HOH HOH . E 5 HOH A 78 578 181 HOH HOH . E 5 HOH A 79 579 120 HOH HOH . E 5 HOH A 80 580 11 HOH HOH . E 5 HOH A 81 581 19 HOH HOH . E 5 HOH A 82 582 187 HOH HOH . E 5 HOH A 83 583 36 HOH HOH . E 5 HOH A 84 584 27 HOH HOH . E 5 HOH A 85 585 287 HOH HOH . E 5 HOH A 86 586 115 HOH HOH . E 5 HOH A 87 587 9 HOH HOH . E 5 HOH A 88 588 260 HOH HOH . E 5 HOH A 89 589 61 HOH HOH . E 5 HOH A 90 590 97 HOH HOH . E 5 HOH A 91 591 26 HOH HOH . E 5 HOH A 92 592 43 HOH HOH . E 5 HOH A 93 593 16 HOH HOH . E 5 HOH A 94 594 89 HOH HOH . E 5 HOH A 95 595 126 HOH HOH . E 5 HOH A 96 596 45 HOH HOH . E 5 HOH A 97 597 152 HOH HOH . E 5 HOH A 98 598 10 HOH HOH . E 5 HOH A 99 599 148 HOH HOH . E 5 HOH A 100 600 62 HOH HOH . E 5 HOH A 101 601 195 HOH HOH . E 5 HOH A 102 602 163 HOH HOH . E 5 HOH A 103 603 47 HOH HOH . E 5 HOH A 104 604 160 HOH HOH . E 5 HOH A 105 605 235 HOH HOH . E 5 HOH A 106 606 94 HOH HOH . E 5 HOH A 107 607 8 HOH HOH . E 5 HOH A 108 608 142 HOH HOH . E 5 HOH A 109 609 74 HOH HOH . E 5 HOH A 110 610 39 HOH HOH . E 5 HOH A 111 611 32 HOH HOH . E 5 HOH A 112 612 230 HOH HOH . E 5 HOH A 113 613 134 HOH HOH . E 5 HOH A 114 614 133 HOH HOH . E 5 HOH A 115 615 5 HOH HOH . E 5 HOH A 116 616 258 HOH HOH . E 5 HOH A 117 617 1 HOH HOH . E 5 HOH A 118 618 288 HOH HOH . E 5 HOH A 119 619 222 HOH HOH . E 5 HOH A 120 620 6 HOH HOH . E 5 HOH A 121 621 13 HOH HOH . E 5 HOH A 122 622 177 HOH HOH . E 5 HOH A 123 623 2 HOH HOH . E 5 HOH A 124 624 66 HOH HOH . E 5 HOH A 125 625 209 HOH HOH . E 5 HOH A 126 626 207 HOH HOH . E 5 HOH A 127 627 92 HOH HOH . E 5 HOH A 128 628 4 HOH HOH . E 5 HOH A 129 629 99 HOH HOH . E 5 HOH A 130 630 190 HOH HOH . E 5 HOH A 131 631 175 HOH HOH . E 5 HOH A 132 632 65 HOH HOH . E 5 HOH A 133 633 34 HOH HOH . E 5 HOH A 134 634 157 HOH HOH . E 5 HOH A 135 635 179 HOH HOH . E 5 HOH A 136 636 136 HOH HOH . E 5 HOH A 137 637 24 HOH HOH . E 5 HOH A 138 638 268 HOH HOH . E 5 HOH A 139 639 55 HOH HOH . E 5 HOH A 140 640 53 HOH HOH . E 5 HOH A 141 641 46 HOH HOH . E 5 HOH A 142 642 17 HOH HOH . E 5 HOH A 143 643 88 HOH HOH . E 5 HOH A 144 644 198 HOH HOH . E 5 HOH A 145 645 250 HOH HOH . E 5 HOH A 146 646 186 HOH HOH . E 5 HOH A 147 647 106 HOH HOH . E 5 HOH A 148 648 3 HOH HOH . E 5 HOH A 149 649 63 HOH HOH . E 5 HOH A 150 650 73 HOH HOH . E 5 HOH A 151 651 137 HOH HOH . E 5 HOH A 152 652 216 HOH HOH . E 5 HOH A 153 653 256 HOH HOH . E 5 HOH A 154 654 244 HOH HOH . E 5 HOH A 155 655 264 HOH HOH . E 5 HOH A 156 656 194 HOH HOH . E 5 HOH A 157 657 265 HOH HOH . E 5 HOH A 158 658 112 HOH HOH . E 5 HOH A 159 659 108 HOH HOH . E 5 HOH A 160 660 214 HOH HOH . E 5 HOH A 161 661 144 HOH HOH . E 5 HOH A 162 662 225 HOH HOH . E 5 HOH A 163 663 80 HOH HOH . E 5 HOH A 164 664 14 HOH HOH . E 5 HOH A 165 665 254 HOH HOH . E 5 HOH A 166 666 105 HOH HOH . E 5 HOH A 167 667 35 HOH HOH . E 5 HOH A 168 668 272 HOH HOH . E 5 HOH A 169 669 18 HOH HOH . E 5 HOH A 170 670 91 HOH HOH . E 5 HOH A 171 671 123 HOH HOH . E 5 HOH A 172 672 129 HOH HOH . E 5 HOH A 173 673 64 HOH HOH . E 5 HOH A 174 674 69 HOH HOH . E 5 HOH A 175 675 12 HOH HOH . E 5 HOH A 176 676 40 HOH HOH . E 5 HOH A 177 677 171 HOH HOH . E 5 HOH A 178 678 191 HOH HOH . E 5 HOH A 179 679 147 HOH HOH . E 5 HOH A 180 680 51 HOH HOH . E 5 HOH A 181 681 125 HOH HOH . E 5 HOH A 182 682 135 HOH HOH . E 5 HOH A 183 683 154 HOH HOH . E 5 HOH A 184 684 138 HOH HOH . E 5 HOH A 185 685 246 HOH HOH . E 5 HOH A 186 686 86 HOH HOH . E 5 HOH A 187 687 231 HOH HOH . E 5 HOH A 188 688 233 HOH HOH . E 5 HOH A 189 689 30 HOH HOH . E 5 HOH A 190 690 289 HOH HOH . E 5 HOH A 191 691 113 HOH HOH . E 5 HOH A 192 692 200 HOH HOH . E 5 HOH A 193 693 281 HOH HOH . E 5 HOH A 194 694 41 HOH HOH . E 5 HOH A 195 695 146 HOH HOH . E 5 HOH A 196 696 25 HOH HOH . E 5 HOH A 197 697 23 HOH HOH . E 5 HOH A 198 698 98 HOH HOH . E 5 HOH A 199 699 208 HOH HOH . E 5 HOH A 200 700 197 HOH HOH . E 5 HOH A 201 701 127 HOH HOH . E 5 HOH A 202 702 286 HOH HOH . E 5 HOH A 203 703 139 HOH HOH . E 5 HOH A 204 704 57 HOH HOH . E 5 HOH A 205 705 263 HOH HOH . E 5 HOH A 206 706 149 HOH HOH . E 5 HOH A 207 707 178 HOH HOH . E 5 HOH A 208 708 54 HOH HOH . E 5 HOH A 209 709 70 HOH HOH . E 5 HOH A 210 710 101 HOH HOH . E 5 HOH A 211 711 237 HOH HOH . E 5 HOH A 212 712 270 HOH HOH . E 5 HOH A 213 713 285 HOH HOH . E 5 HOH A 214 714 132 HOH HOH . E 5 HOH A 215 715 31 HOH HOH . E 5 HOH A 216 716 159 HOH HOH . E 5 HOH A 217 717 183 HOH HOH . E 5 HOH A 218 718 280 HOH HOH . E 5 HOH A 219 719 166 HOH HOH . E 5 HOH A 220 720 276 HOH HOH . E 5 HOH A 221 721 60 HOH HOH . E 5 HOH A 222 722 279 HOH HOH . E 5 HOH A 223 723 211 HOH HOH . E 5 HOH A 224 724 124 HOH HOH . E 5 HOH A 225 725 141 HOH HOH . E 5 HOH A 226 726 131 HOH HOH . E 5 HOH A 227 727 143 HOH HOH . E 5 HOH A 228 728 283 HOH HOH . E 5 HOH A 229 729 252 HOH HOH . E 5 HOH A 230 730 226 HOH HOH . E 5 HOH A 231 731 278 HOH HOH . E 5 HOH A 232 732 284 HOH HOH . E 5 HOH A 233 733 255 HOH HOH . E 5 HOH A 234 734 293 HOH HOH . E 5 HOH A 235 735 282 HOH HOH . E 5 HOH A 236 736 67 HOH HOH . E 5 HOH A 237 737 167 HOH HOH . E 5 HOH A 238 738 104 HOH HOH . E 5 HOH A 239 739 172 HOH HOH . E 5 HOH A 240 740 261 HOH HOH . E 5 HOH A 241 741 224 HOH HOH . E 5 HOH A 242 742 111 HOH HOH . E 5 HOH A 243 743 72 HOH HOH . E 5 HOH A 244 744 170 HOH HOH . E 5 HOH A 245 745 50 HOH HOH . E 5 HOH A 246 746 188 HOH HOH . E 5 HOH A 247 747 162 HOH HOH . E 5 HOH A 248 748 103 HOH HOH . E 5 HOH A 249 749 239 HOH HOH . E 5 HOH A 250 750 96 HOH HOH . E 5 HOH A 251 751 212 HOH HOH . E 5 HOH A 252 752 257 HOH HOH . E 5 HOH A 253 753 294 HOH HOH . E 5 HOH A 254 754 180 HOH HOH . E 5 HOH A 255 755 259 HOH HOH . E 5 HOH A 256 756 290 HOH HOH . E 5 HOH A 257 757 292 HOH HOH . E 5 HOH A 258 758 169 HOH HOH . E 5 HOH A 259 759 243 HOH HOH . E 5 HOH A 260 760 110 HOH HOH . E 5 HOH A 261 761 267 HOH HOH . E 5 HOH A 262 762 215 HOH HOH . E 5 HOH A 263 763 277 HOH HOH . E 5 HOH A 264 764 202 HOH HOH . E 5 HOH A 265 765 84 HOH HOH . E 5 HOH A 266 766 165 HOH HOH . E 5 HOH A 267 767 155 HOH HOH . E 5 HOH A 268 768 29 HOH HOH . E 5 HOH A 269 769 153 HOH HOH . E 5 HOH A 270 770 140 HOH HOH . E 5 HOH A 271 771 176 HOH HOH . E 5 HOH A 272 772 81 HOH HOH . E 5 HOH A 273 773 223 HOH HOH . E 5 HOH A 274 774 245 HOH HOH . E 5 HOH A 275 775 121 HOH HOH . E 5 HOH A 276 776 229 HOH HOH . E 5 HOH A 277 777 228 HOH HOH . E 5 HOH A 278 778 68 HOH HOH . E 5 HOH A 279 779 210 HOH HOH . E 5 HOH A 280 780 168 HOH HOH . E 5 HOH A 281 781 203 HOH HOH . E 5 HOH A 282 782 213 HOH HOH . E 5 HOH A 283 783 204 HOH HOH . E 5 HOH A 284 784 201 HOH HOH . E 5 HOH A 285 785 128 HOH HOH . E 5 HOH A 286 786 266 HOH HOH . E 5 HOH A 287 787 95 HOH HOH . E 5 HOH A 288 788 182 HOH HOH . E 5 HOH A 289 789 242 HOH HOH . E 5 HOH A 290 790 220 HOH HOH . E 5 HOH A 291 791 297 HOH HOH . E 5 HOH A 292 792 247 HOH HOH . E 5 HOH A 293 793 205 HOH HOH . E 5 HOH A 294 794 298 HOH HOH . E 5 HOH A 295 795 174 HOH HOH . E 5 HOH A 296 796 217 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -11.481 _atom_site.Cartn_y 8.129 _atom_site.Cartn_z 31.386 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 26.52 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 403 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 230 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #