data_8JNS
#
_model_server_result.job_id            1pkPSVyv2C7srNwLcDWhiw 
_model_server_result.datetime_utc      '2024-10-10 02:29:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jns 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":602}' 
#
_entry.id    8JNS 
#
_exptl.entry_id    8JNS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 K N N 
? 3 M N N 
? 3 O N N 
? 3 Q N N 
? 3 S N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 166 A SER 166 1_555 J MG MG . A MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc2 J MG MG . A MG 601 1_555 K O2G ATP . A ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc3 B OG SER 166 B SER 166 1_555 L MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc4 L MG MG . B MG 601 1_555 M O2G ATP . B ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc5 C OG SER 166 C SER 166 1_555 N MG MG . C MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc6 N MG MG . C MG 601 1_555 O O2G ATP . C ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc7 D OG SER 166 D SER 166 1_555 P MG MG . D MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.926 ? 
metalc ? metalc8 P MG MG . D MG 601 1_555 Q O2G ATP . D ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? 
metalc ? metalc9 E OG SER 166 E SER 166 1_555 R MG MG . E MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc10 R MG MG . E MG 601 1_555 S O2G ATP . E ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
metalc ? metalc11 F OG SER 166 F SER 166 1_555 T MG MG . F MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
metalc ? metalc12 T MG MG . F MG 601 1_555 U O2G ATP . F ATP 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8JNS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 2 MG A 1 601 601 MG MG . 
K 3 ATP A 1 602 602 ATP ATP . 
L 2 MG B 1 601 601 MG MG . 
M 3 ATP B 1 602 602 ATP ATP . 
N 2 MG C 1 601 601 MG MG . 
O 3 ATP C 1 602 602 ATP ATP . 
P 2 MG D 1 601 601 MG MG . 
Q 3 ATP D 1 602 602 ATP ATP . 
R 2 MG E 1 601 601 MG MG . 
S 3 ATP E 1 602 602 ATP ATP . 
T 2 MG F 1 601 601 MG MG . 
U 3 ATP F 1 602 602 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . S 3 166.654 122.999 152.387 1 149.25 ? PG ATP 602 E 1 
HETATM 2 O O1G ATP . . . S 3 168.057 122.482 152.528 1 138.32 ? O1G ATP 602 E 1 
HETATM 3 O O2G ATP . . . S 3 166.325 124.065 153.432 1 143.47 ? O2G ATP 602 E 1 
HETATM 4 O O3G ATP . . . S 3 166.182 123.23 150.966 1 92.28 ? O3G ATP 602 E 1 
HETATM 5 P PB ATP . . . S 3 165.821 121.214 154.184 1 109.9 ? PB ATP 602 E 1 
HETATM 6 O O1B ATP . . . S 3 166.06 122.488 154.962 1 120.04 ? O1B ATP 602 E 1 
HETATM 7 O O2B ATP . . . S 3 166.82 120.1 154.056 1 114.85 ? O2B ATP 602 E 1 
HETATM 8 O O3B ATP . . . S 3 165.694 121.766 152.708 1 313.52 ? O3B ATP 602 E 1 
HETATM 9 P PA ATP . . . S 3 163.375 121.37 155.594 1 116.06 ? PA ATP 602 E 1 
HETATM 10 O O1A ATP . . . S 3 163.34 120.683 156.942 1 117.95 ? O1A ATP 602 E 1 
HETATM 11 O O2A ATP . . . S 3 163.526 122.879 155.549 1 116.95 ? O2A ATP 602 E 1 
HETATM 12 O O3A ATP . . . S 3 164.377 120.599 154.584 1 115.97 ? O3A ATP 602 E 1 
HETATM 13 O O5' ATP . . . S 3 161.979 121.055 154.934 1 108.86 ? O5' ATP 602 E 1 
HETATM 14 C C5' ATP . . . S 3 160.96 122.001 155.193 1 108.09 ? C5' ATP 602 E 1 
HETATM 15 C C4' ATP . . . S 3 159.723 121.264 154.733 1 113.12 ? C4' ATP 602 E 1 
HETATM 16 O O4' ATP . . . S 3 160.012 119.859 154.656 1 112.61 ? O4' ATP 602 E 1 
HETATM 17 C C3' ATP . . . S 3 158.582 121.431 155.711 1 120.17 ? C3' ATP 602 E 1 
HETATM 18 O O3' ATP . . . S 3 157.67 122.416 155.219 1 124.97 ? O3' ATP 602 E 1 
HETATM 19 C C2' ATP . . . S 3 157.93 120.068 155.719 1 118.65 ? C2' ATP 602 E 1 
HETATM 20 O O2' ATP . . . S 3 156.984 120.101 154.657 1 124.05 ? O2' ATP 602 E 1 
HETATM 21 C C1' ATP . . . S 3 159.012 119.068 155.339 1 123.73 ? C1' ATP 602 E 1 
HETATM 22 N N9 ATP . . . S 3 159.593 118.416 156.571 1 124.88 ? N9 ATP 602 E 1 
HETATM 23 C C8 ATP . . . S 3 160.894 118.054 156.745 1 120.69 ? C8 ATP 602 E 1 
HETATM 24 N N7 ATP . . . S 3 161.129 117.484 157.952 1 110.07 ? N7 ATP 602 E 1 
HETATM 25 C C5 ATP . . . S 3 159.948 117.471 158.602 1 122.91 ? C5 ATP 602 E 1 
HETATM 26 C C6 ATP . . . S 3 159.488 117.018 159.946 1 133.01 ? C6 ATP 602 E 1 
HETATM 27 N N6 ATP . . . S 3 160.366 116.457 160.838 1 112.96 ? N6 ATP 602 E 1 
HETATM 28 N N1 ATP . . . S 3 158.167 117.183 160.233 1 137.6 ? N1 ATP 602 E 1 
HETATM 29 C C2 ATP . . . S 3 157.309 117.729 159.343 1 132.75 ? C2 ATP 602 E 1 
HETATM 30 N N3 ATP . . . S 3 157.654 118.165 158.115 1 119.05 ? N3 ATP 602 E 1 
HETATM 31 C C4 ATP . . . S 3 158.939 118.064 157.691 1 118.22 ? C4 ATP 602 E 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    26 
_model_server_stats.query_time_ms           261 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#