data_8JO3
#
_model_server_result.job_id            Ju1Vi7tK822wuP2grg-YSg 
_model_server_result.datetime_utc      '2024-10-11 03:17:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jo3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":402}' 
#
_entry.id    8JO3 
#
_exptl.entry_id    8JO3 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JO3 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JO3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 D CA CA . B CA 401 1_555 E O2B ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc2 D CA CA . B CA 401 1_555 E O1G ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 109 n n 
PG O2G ATP sing 110 n n 
PG O3G ATP sing 111 n n 
PG O3B ATP sing 112 n n 
O2G HOG2 ATP sing 113 n n 
O3G HOG3 ATP sing 114 n n 
PB O1B ATP doub 115 n n 
PB O2B ATP sing 116 n n 
PB O3B ATP sing 117 n n 
PB O3A ATP sing 118 n n 
O2B HOB2 ATP sing 119 n n 
PA O1A ATP doub 120 n n 
PA O2A ATP sing 121 n n 
PA O3A ATP sing 122 n n 
PA O5' ATP sing 123 n n 
O2A HOA2 ATP sing 124 n n 
O5' C5' ATP sing 125 n n 
C5' C4' ATP sing 126 n n 
C5' "H5'1" ATP sing 127 n n 
C5' "H5'2" ATP sing 128 n n 
C4' O4' ATP sing 129 n n 
C4' C3' ATP sing 130 n n 
C4' H4' ATP sing 131 n n 
O4' C1' ATP sing 132 n n 
C3' O3' ATP sing 133 n n 
C3' C2' ATP sing 134 n n 
C3' H3' ATP sing 135 n n 
O3' HO3' ATP sing 136 n n 
C2' O2' ATP sing 137 n n 
C2' C1' ATP sing 138 n n 
C2' H2' ATP sing 139 n n 
O2' HO2' ATP sing 140 n n 
C1' N9 ATP sing 141 n n 
C1' H1' ATP sing 142 n n 
N9 C8 ATP sing 143 n y 
N9 C4 ATP sing 144 n y 
C8 N7 ATP doub 145 n y 
C8 H8 ATP sing 146 n n 
N7 C5 ATP sing 147 n y 
C5 C6 ATP sing 148 n y 
C5 C4 ATP doub 149 n y 
C6 N6 ATP sing 150 n n 
C6 N1 ATP doub 151 n y 
N6 HN61 ATP sing 152 n n 
N6 HN62 ATP sing 153 n n 
N1 C2 ATP sing 154 n y 
C2 N3 ATP doub 155 n y 
C2 H2 ATP sing 156 n n 
N3 C4 ATP sing 157 n y 
#
_atom_sites.entry_id                     8JO3 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 AMP A 1 501 1 AMP AMP . 
D 4 CA B 1 401 1 CA CA . 
E 5 ATP B 1 402 1 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . E 5 113.876 119.97 97.068 1 32.83 ? PG ATP 402 B 1 
HETATM 2 O O1G ATP . . . E 5 114.746 119.078 97.886 1 37.95 ? O1G ATP 402 B 1 
HETATM 3 O O2G ATP . . . E 5 112.415 119.97 97.501 1 29.32 ? O2G ATP 402 B 1 
HETATM 4 O O3G ATP . . . E 5 114.369 121.412 96.998 1 29.39 ? O3G ATP 402 B 1 
HETATM 5 P PB ATP . . . E 5 114.488 118.369 94.613 1 15.99 ? PB ATP 402 B 1 
HETATM 6 O O1B ATP . . . E 5 113.493 117.79 93.694 1 31.68 ? O1B ATP 402 B 1 
HETATM 7 O O2B ATP . . . E 5 115.212 117.381 95.521 1 32.63 ? O2B ATP 402 B 1 
HETATM 8 O O3B ATP . . . E 5 113.845 119.483 95.546 1 29.42 ? O3B ATP 402 B 1 
HETATM 9 P PA ATP . . . E 5 116.997 118.891 93.141 1 22.84 ? PA ATP 402 B 1 
HETATM 10 O O1A ATP . . . E 5 118.127 119.064 94.076 1 28.41 ? O1A ATP 402 B 1 
HETATM 11 O O2A ATP . . . E 5 116.885 117.512 92.499 1 35.26 ? O2A ATP 402 B 1 
HETATM 12 O O3A ATP . . . E 5 115.606 119.197 93.842 1 21.37 ? O3A ATP 402 B 1 
HETATM 13 O O5' ATP . . . E 5 117.055 119.97 91.991 1 26.57 ? O5' ATP 402 B 1 
HETATM 14 C C5' ATP . . . E 5 116.207 119.871 90.828 1 31.28 ? C5' ATP 402 B 1 
HETATM 15 C C4' ATP . . . E 5 115.962 121.26 90.295 1 30.06 ? C4' ATP 402 B 1 
HETATM 16 O O4' ATP . . . E 5 117.211 121.836 89.853 1 28.24 ? O4' ATP 402 B 1 
HETATM 17 C C3' ATP . . . E 5 115.012 121.341 89.102 1 27.39 ? C3' ATP 402 B 1 
HETATM 18 O O3' ATP . . . E 5 114.215 122.519 89.159 1 27.37 ? O3' ATP 402 B 1 
HETATM 19 C C2' ATP . . . E 5 115.969 121.357 87.91 1 27.88 ? C2' ATP 402 B 1 
HETATM 20 O O2' ATP . . . E 5 115.398 122.025 86.791 1 36.3 ? O2' ATP 402 B 1 
HETATM 21 C C1' ATP . . . E 5 117.138 122.16 88.478 1 29.13 ? C1' ATP 402 B 1 
HETATM 22 N N9 ATP . . . E 5 118.424 121.855 87.864 1 29.71 ? N9 ATP 402 B 1 
HETATM 23 C C8 ATP . . . E 5 119.001 120.62 87.722 1 31.99 ? C8 ATP 402 B 1 
HETATM 24 N N7 ATP . . . E 5 120.17 120.641 87.129 1 34.85 ? N7 ATP 402 B 1 
HETATM 25 C C5 ATP . . . E 5 120.38 121.986 86.865 1 33.07 ? C5 ATP 402 B 1 
HETATM 26 C C6 ATP . . . E 5 121.435 122.679 86.242 1 33.67 ? C6 ATP 402 B 1 
HETATM 27 N N6 ATP . . . E 5 122.532 122.087 85.759 1 34.35 ? N6 ATP 402 B 1 
HETATM 28 N N1 ATP . . . E 5 121.328 124.021 86.134 1 30.96 ? N1 ATP 402 B 1 
HETATM 29 C C2 ATP . . . E 5 120.236 124.62 86.614 1 29.69 ? C2 ATP 402 B 1 
HETATM 30 N N3 ATP . . . E 5 119.178 124.072 87.215 1 30.34 ? N3 ATP 402 B 1 
HETATM 31 C C4 ATP . . . E 5 119.31 122.745 87.309 1 32.09 ? C4 ATP 402 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           380 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#