data_8JO4
#
_model_server_result.job_id            VkUwkon8LOlFraSygPbjCA 
_model_server_result.datetime_utc      '2025-02-25 05:23:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jo4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":402}' 
#
_entry.id    8JO4 
#
_exptl.entry_id    8JO4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JO4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JO4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 165 A ASP 165 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc2 E CA CA . B CA 401 1_555 F O1G ATP . B ATP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     8JO4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ATP A 1 501 2 ATP ATP . 
D 4 MG A 1 502 1 MG MG . 
E 5 CA B 1 401 1 CA CA . 
F 3 ATP B 1 402 1 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . F 3 122.794 118.643 98.584 1 42.68 ? PG ATP 402 B 1 
HETATM 2 O O1G ATP . . . F 3 121.886 119.521 99.371 1 48.86 ? O1G ATP 402 B 1 
HETATM 3 O O2G ATP . . . F 3 124.264 118.81 98.924 1 45.71 -1 O2G ATP 402 B 1 
HETATM 4 O O3G ATP . . . F 3 122.438 117.167 98.672 1 33.31 ? O3G ATP 402 B 1 
HETATM 5 P PB ATP . . . F 3 122.051 120.056 96.061 1 28.13 ? PB ATP 402 B 1 
HETATM 6 O O1B ATP . . . F 3 122.879 120.273 94.865 1 37.45 -1 O1B ATP 402 B 1 
HETATM 7 O O2B ATP . . . F 3 121.735 121.289 96.893 1 39.88 ? O2B ATP 402 B 1 
HETATM 8 O O3B ATP . . . F 3 122.701 118.984 97.031 1 32.43 ? O3B ATP 402 B 1 
HETATM 9 P PA ATP . . . F 3 119.397 119.735 94.831 1 46.51 ? PA ATP 402 B 1 
HETATM 10 O O1A ATP . . . F 3 118.148 119.653 95.613 1 42.18 -1 O1A ATP 402 B 1 
HETATM 11 O O2A ATP . . . F 3 119.679 121.08 94.177 1 41.12 ? O2A ATP 402 B 1 
HETATM 12 O O3A ATP . . . F 3 120.658 119.377 95.706 1 43.07 ? O3A ATP 402 B 1 
HETATM 13 O O5' ATP . . . F 3 119.423 118.628 93.707 1 40 ? O5' ATP 402 B 1 
HETATM 14 C C5' ATP . . . F 3 120.376 118.68 92.626 1 39.27 ? C5' ATP 402 B 1 
HETATM 15 C C4' ATP . . . F 3 120.372 117.344 91.929 1 37.42 ? C4' ATP 402 B 1 
HETATM 16 O O4' ATP . . . F 3 119.027 117.018 91.511 1 33.85 ? O4' ATP 402 B 1 
HETATM 17 C C3' ATP . . . F 3 121.255 117.255 90.683 1 36.9 ? C3' ATP 402 B 1 
HETATM 18 O O3' ATP . . . F 3 122.018 116.056 90.68 1 42.32 ? O3' ATP 402 B 1 
HETATM 19 C C2' ATP . . . F 3 120.245 117.283 89.533 1 39.16 ? C2' ATP 402 B 1 
HETATM 20 O O2' ATP . . . F 3 120.707 116.532 88.418 1 42.66 ? O2' ATP 402 B 1 
HETATM 21 C C1' ATP . . . F 3 119.049 116.585 90.169 1 40.25 ? C1' ATP 402 B 1 
HETATM 22 N N9 ATP . . . F 3 117.77 116.917 89.555 1 37.44 ? N9 ATP 402 B 1 
HETATM 23 C C8 ATP . . . F 3 117.342 118.154 89.151 1 43.44 ? C8 ATP 402 B 1 
HETATM 24 N N7 ATP . . . F 3 116.141 118.16 88.626 1 47.58 ? N7 ATP 402 B 1 
HETATM 25 C C5 ATP . . . F 3 115.75 116.831 88.689 1 40.76 ? C5 ATP 402 B 1 
HETATM 26 C C6 ATP . . . F 3 114.574 116.166 88.292 1 39.45 ? C6 ATP 402 B 1 
HETATM 27 N N6 ATP . . . F 3 113.526 116.777 87.73 1 48.84 ? N6 ATP 402 B 1 
HETATM 28 N N1 ATP . . . F 3 114.505 114.834 88.497 1 33.44 ? N1 ATP 402 B 1 
HETATM 29 C C2 ATP . . . F 3 115.547 114.217 89.059 1 40.33 ? C2 ATP 402 B 1 
HETATM 30 N N3 ATP . . . F 3 116.706 114.736 89.47 1 43.13 ? N3 ATP 402 B 1 
HETATM 31 C C4 ATP . . . F 3 116.745 116.054 89.258 1 38.26 ? C4 ATP 402 B 1 
#
_model_server_stats.io_time_ms              31 
_model_server_stats.parse_time_ms           46 
_model_server_stats.create_model_time_ms    87 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#