data_8JOT # _model_server_result.job_id HW77nX7rCWdW30Sqf5F5Yg _model_server_result.datetime_utc '2025-01-10 12:43:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1002}' # _entry.id 8JOT # _exptl.entry_id 8JOT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JOT _cell.length_a 64.31 _cell.length_b 64.31 _cell.length_c 184.685 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JOT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8JOT _atom_sites.fract_transf_matrix[1][1] 0.01555 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01555 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UKI A 1 1001 1001 UKI DRG . C 3 GOL A 1 1002 1101 GOL GOL . D 4 HOH A 1 1101 316 HOH HOH . D 4 HOH A 2 1102 106 HOH HOH . D 4 HOH A 3 1103 251 HOH HOH . D 4 HOH A 4 1104 270 HOH HOH . D 4 HOH A 5 1105 143 HOH HOH . D 4 HOH A 6 1106 283 HOH HOH . D 4 HOH A 7 1107 180 HOH HOH . D 4 HOH A 8 1108 273 HOH HOH . D 4 HOH A 9 1109 188 HOH HOH . D 4 HOH A 10 1110 226 HOH HOH . D 4 HOH A 11 1111 135 HOH HOH . D 4 HOH A 12 1112 98 HOH HOH . D 4 HOH A 13 1113 166 HOH HOH . D 4 HOH A 14 1114 304 HOH HOH . D 4 HOH A 15 1115 235 HOH HOH . D 4 HOH A 16 1116 219 HOH HOH . D 4 HOH A 17 1117 71 HOH HOH . D 4 HOH A 18 1118 40 HOH HOH . D 4 HOH A 19 1119 285 HOH HOH . D 4 HOH A 20 1120 84 HOH HOH . D 4 HOH A 21 1121 133 HOH HOH . D 4 HOH A 22 1122 115 HOH HOH . D 4 HOH A 23 1123 33 HOH HOH . D 4 HOH A 24 1124 321 HOH HOH . D 4 HOH A 25 1125 95 HOH HOH . D 4 HOH A 26 1126 213 HOH HOH . D 4 HOH A 27 1127 9 HOH HOH . D 4 HOH A 28 1128 72 HOH HOH . D 4 HOH A 29 1129 91 HOH HOH . D 4 HOH A 30 1130 130 HOH HOH . D 4 HOH A 31 1131 99 HOH HOH . D 4 HOH A 32 1132 102 HOH HOH . D 4 HOH A 33 1133 120 HOH HOH . D 4 HOH A 34 1134 128 HOH HOH . D 4 HOH A 35 1135 278 HOH HOH . D 4 HOH A 36 1136 150 HOH HOH . D 4 HOH A 37 1137 144 HOH HOH . D 4 HOH A 38 1138 193 HOH HOH . D 4 HOH A 39 1139 113 HOH HOH . D 4 HOH A 40 1140 74 HOH HOH . D 4 HOH A 41 1141 70 HOH HOH . D 4 HOH A 42 1142 125 HOH HOH . D 4 HOH A 43 1143 190 HOH HOH . D 4 HOH A 44 1144 88 HOH HOH . D 4 HOH A 45 1145 322 HOH HOH . D 4 HOH A 46 1146 86 HOH HOH . D 4 HOH A 47 1147 23 HOH HOH . D 4 HOH A 48 1148 24 HOH HOH . D 4 HOH A 49 1149 185 HOH HOH . D 4 HOH A 50 1150 107 HOH HOH . D 4 HOH A 51 1151 13 HOH HOH . D 4 HOH A 52 1152 172 HOH HOH . D 4 HOH A 53 1153 26 HOH HOH . D 4 HOH A 54 1154 55 HOH HOH . D 4 HOH A 55 1155 114 HOH HOH . D 4 HOH A 56 1156 6 HOH HOH . D 4 HOH A 57 1157 141 HOH HOH . D 4 HOH A 58 1158 66 HOH HOH . D 4 HOH A 59 1159 261 HOH HOH . D 4 HOH A 60 1160 37 HOH HOH . D 4 HOH A 61 1161 201 HOH HOH . D 4 HOH A 62 1162 81 HOH HOH . D 4 HOH A 63 1163 208 HOH HOH . D 4 HOH A 64 1164 57 HOH HOH . D 4 HOH A 65 1165 118 HOH HOH . D 4 HOH A 66 1166 4 HOH HOH . D 4 HOH A 67 1167 119 HOH HOH . D 4 HOH A 68 1168 52 HOH HOH . D 4 HOH A 69 1169 100 HOH HOH . D 4 HOH A 70 1170 7 HOH HOH . D 4 HOH A 71 1171 60 HOH HOH . D 4 HOH A 72 1172 173 HOH HOH . D 4 HOH A 73 1173 126 HOH HOH . D 4 HOH A 74 1174 56 HOH HOH . D 4 HOH A 75 1175 179 HOH HOH . D 4 HOH A 76 1176 78 HOH HOH . D 4 HOH A 77 1177 25 HOH HOH . D 4 HOH A 78 1178 21 HOH HOH . D 4 HOH A 79 1179 19 HOH HOH . D 4 HOH A 80 1180 17 HOH HOH . D 4 HOH A 81 1181 80 HOH HOH . D 4 HOH A 82 1182 160 HOH HOH . D 4 HOH A 83 1183 46 HOH HOH . D 4 HOH A 84 1184 30 HOH HOH . D 4 HOH A 85 1185 85 HOH HOH . D 4 HOH A 86 1186 243 HOH HOH . D 4 HOH A 87 1187 29 HOH HOH . D 4 HOH A 88 1188 263 HOH HOH . D 4 HOH A 89 1189 289 HOH HOH . D 4 HOH A 90 1190 123 HOH HOH . D 4 HOH A 91 1191 184 HOH HOH . D 4 HOH A 92 1192 44 HOH HOH . D 4 HOH A 93 1193 50 HOH HOH . D 4 HOH A 94 1194 295 HOH HOH . D 4 HOH A 95 1195 124 HOH HOH . D 4 HOH A 96 1196 299 HOH HOH . D 4 HOH A 97 1197 42 HOH HOH . D 4 HOH A 98 1198 268 HOH HOH . D 4 HOH A 99 1199 16 HOH HOH . D 4 HOH A 100 1200 12 HOH HOH . D 4 HOH A 101 1201 149 HOH HOH . D 4 HOH A 102 1202 82 HOH HOH . D 4 HOH A 103 1203 22 HOH HOH . D 4 HOH A 104 1204 97 HOH HOH . D 4 HOH A 105 1205 18 HOH HOH . D 4 HOH A 106 1206 288 HOH HOH . D 4 HOH A 107 1207 317 HOH HOH . D 4 HOH A 108 1208 224 HOH HOH . D 4 HOH A 109 1209 61 HOH HOH . D 4 HOH A 110 1210 117 HOH HOH . D 4 HOH A 111 1211 146 HOH HOH . D 4 HOH A 112 1212 197 HOH HOH . D 4 HOH A 113 1213 217 HOH HOH . D 4 HOH A 114 1214 63 HOH HOH . D 4 HOH A 115 1215 148 HOH HOH . D 4 HOH A 116 1216 39 HOH HOH . D 4 HOH A 117 1217 51 HOH HOH . D 4 HOH A 118 1218 32 HOH HOH . D 4 HOH A 119 1219 269 HOH HOH . D 4 HOH A 120 1220 121 HOH HOH . D 4 HOH A 121 1221 3 HOH HOH . D 4 HOH A 122 1222 31 HOH HOH . D 4 HOH A 123 1223 158 HOH HOH . D 4 HOH A 124 1224 145 HOH HOH . D 4 HOH A 125 1225 93 HOH HOH . D 4 HOH A 126 1226 64 HOH HOH . D 4 HOH A 127 1227 205 HOH HOH . D 4 HOH A 128 1228 307 HOH HOH . D 4 HOH A 129 1229 73 HOH HOH . D 4 HOH A 130 1230 11 HOH HOH . D 4 HOH A 131 1231 43 HOH HOH . D 4 HOH A 132 1232 2 HOH HOH . D 4 HOH A 133 1233 47 HOH HOH . D 4 HOH A 134 1234 62 HOH HOH . D 4 HOH A 135 1235 216 HOH HOH . D 4 HOH A 136 1236 28 HOH HOH . D 4 HOH A 137 1237 41 HOH HOH . D 4 HOH A 138 1238 300 HOH HOH . D 4 HOH A 139 1239 252 HOH HOH . D 4 HOH A 140 1240 249 HOH HOH . D 4 HOH A 141 1241 258 HOH HOH . D 4 HOH A 142 1242 245 HOH HOH . D 4 HOH A 143 1243 212 HOH HOH . D 4 HOH A 144 1244 189 HOH HOH . D 4 HOH A 145 1245 223 HOH HOH . D 4 HOH A 146 1246 137 HOH HOH . D 4 HOH A 147 1247 218 HOH HOH . D 4 HOH A 148 1248 138 HOH HOH . D 4 HOH A 149 1249 310 HOH HOH . D 4 HOH A 150 1250 108 HOH HOH . D 4 HOH A 151 1251 230 HOH HOH . D 4 HOH A 152 1252 35 HOH HOH . D 4 HOH A 153 1253 5 HOH HOH . D 4 HOH A 154 1254 131 HOH HOH . D 4 HOH A 155 1255 293 HOH HOH . D 4 HOH A 156 1256 127 HOH HOH . D 4 HOH A 157 1257 103 HOH HOH . D 4 HOH A 158 1258 92 HOH HOH . D 4 HOH A 159 1259 229 HOH HOH . D 4 HOH A 160 1260 176 HOH HOH . D 4 HOH A 161 1261 90 HOH HOH . D 4 HOH A 162 1262 34 HOH HOH . D 4 HOH A 163 1263 228 HOH HOH . D 4 HOH A 164 1264 59 HOH HOH . D 4 HOH A 165 1265 157 HOH HOH . D 4 HOH A 166 1266 313 HOH HOH . D 4 HOH A 167 1267 175 HOH HOH . D 4 HOH A 168 1268 265 HOH HOH . D 4 HOH A 169 1269 36 HOH HOH . D 4 HOH A 170 1270 236 HOH HOH . D 4 HOH A 171 1271 48 HOH HOH . D 4 HOH A 172 1272 20 HOH HOH . D 4 HOH A 173 1273 83 HOH HOH . D 4 HOH A 174 1274 129 HOH HOH . D 4 HOH A 175 1275 53 HOH HOH . D 4 HOH A 176 1276 181 HOH HOH . D 4 HOH A 177 1277 221 HOH HOH . D 4 HOH A 178 1278 178 HOH HOH . D 4 HOH A 179 1279 14 HOH HOH . D 4 HOH A 180 1280 296 HOH HOH . D 4 HOH A 181 1281 231 HOH HOH . D 4 HOH A 182 1282 248 HOH HOH . D 4 HOH A 183 1283 27 HOH HOH . D 4 HOH A 184 1284 152 HOH HOH . D 4 HOH A 185 1285 109 HOH HOH . D 4 HOH A 186 1286 271 HOH HOH . D 4 HOH A 187 1287 276 HOH HOH . D 4 HOH A 188 1288 232 HOH HOH . D 4 HOH A 189 1289 79 HOH HOH . D 4 HOH A 190 1290 192 HOH HOH . D 4 HOH A 191 1291 264 HOH HOH . D 4 HOH A 192 1292 142 HOH HOH . D 4 HOH A 193 1293 204 HOH HOH . D 4 HOH A 194 1294 139 HOH HOH . D 4 HOH A 195 1295 76 HOH HOH . D 4 HOH A 196 1296 65 HOH HOH . D 4 HOH A 197 1297 274 HOH HOH . D 4 HOH A 198 1298 68 HOH HOH . D 4 HOH A 199 1299 15 HOH HOH . D 4 HOH A 200 1300 302 HOH HOH . D 4 HOH A 201 1301 187 HOH HOH . D 4 HOH A 202 1302 169 HOH HOH . D 4 HOH A 203 1303 1 HOH HOH . D 4 HOH A 204 1304 202 HOH HOH . D 4 HOH A 205 1305 67 HOH HOH . D 4 HOH A 206 1306 199 HOH HOH . D 4 HOH A 207 1307 267 HOH HOH . D 4 HOH A 208 1308 38 HOH HOH . D 4 HOH A 209 1309 110 HOH HOH . D 4 HOH A 210 1310 167 HOH HOH . D 4 HOH A 211 1311 10 HOH HOH . D 4 HOH A 212 1312 94 HOH HOH . D 4 HOH A 213 1313 8 HOH HOH . D 4 HOH A 214 1314 239 HOH HOH . D 4 HOH A 215 1315 89 HOH HOH . D 4 HOH A 216 1316 298 HOH HOH . D 4 HOH A 217 1317 116 HOH HOH . D 4 HOH A 218 1318 206 HOH HOH . D 4 HOH A 219 1319 234 HOH HOH . D 4 HOH A 220 1320 280 HOH HOH . D 4 HOH A 221 1321 171 HOH HOH . D 4 HOH A 222 1322 312 HOH HOH . D 4 HOH A 223 1323 214 HOH HOH . D 4 HOH A 224 1324 159 HOH HOH . D 4 HOH A 225 1325 318 HOH HOH . D 4 HOH A 226 1326 101 HOH HOH . D 4 HOH A 227 1327 240 HOH HOH . D 4 HOH A 228 1328 315 HOH HOH . D 4 HOH A 229 1329 112 HOH HOH . D 4 HOH A 230 1330 291 HOH HOH . D 4 HOH A 231 1331 242 HOH HOH . D 4 HOH A 232 1332 259 HOH HOH . D 4 HOH A 233 1333 320 HOH HOH . D 4 HOH A 234 1334 297 HOH HOH . D 4 HOH A 235 1335 314 HOH HOH . D 4 HOH A 236 1336 186 HOH HOH . D 4 HOH A 237 1337 77 HOH HOH . D 4 HOH A 238 1338 177 HOH HOH . D 4 HOH A 239 1339 257 HOH HOH . D 4 HOH A 240 1340 254 HOH HOH . D 4 HOH A 241 1341 153 HOH HOH . D 4 HOH A 242 1342 227 HOH HOH . D 4 HOH A 243 1343 238 HOH HOH . D 4 HOH A 244 1344 220 HOH HOH . D 4 HOH A 245 1345 191 HOH HOH . D 4 HOH A 246 1346 198 HOH HOH . D 4 HOH A 247 1347 49 HOH HOH . D 4 HOH A 248 1348 200 HOH HOH . D 4 HOH A 249 1349 319 HOH HOH . D 4 HOH A 250 1350 233 HOH HOH . D 4 HOH A 251 1351 104 HOH HOH . D 4 HOH A 252 1352 69 HOH HOH . D 4 HOH A 253 1353 140 HOH HOH . D 4 HOH A 254 1354 96 HOH HOH . D 4 HOH A 255 1355 122 HOH HOH . D 4 HOH A 256 1356 301 HOH HOH . D 4 HOH A 257 1357 87 HOH HOH . D 4 HOH A 258 1358 237 HOH HOH . D 4 HOH A 259 1359 282 HOH HOH . D 4 HOH A 260 1360 134 HOH HOH . D 4 HOH A 261 1361 286 HOH HOH . D 4 HOH A 262 1362 292 HOH HOH . D 4 HOH A 263 1363 195 HOH HOH . D 4 HOH A 264 1364 272 HOH HOH . D 4 HOH A 265 1365 308 HOH HOH . D 4 HOH A 266 1366 182 HOH HOH . D 4 HOH A 267 1367 247 HOH HOH . D 4 HOH A 268 1368 207 HOH HOH . D 4 HOH A 269 1369 256 HOH HOH . D 4 HOH A 270 1370 250 HOH HOH . D 4 HOH A 271 1371 246 HOH HOH . D 4 HOH A 272 1372 215 HOH HOH . D 4 HOH A 273 1373 290 HOH HOH . D 4 HOH A 274 1374 241 HOH HOH . D 4 HOH A 275 1375 294 HOH HOH . D 4 HOH A 276 1376 210 HOH HOH . D 4 HOH A 277 1377 45 HOH HOH . D 4 HOH A 278 1378 277 HOH HOH . D 4 HOH A 279 1379 222 HOH HOH . D 4 HOH A 280 1380 225 HOH HOH . D 4 HOH A 281 1381 54 HOH HOH . D 4 HOH A 282 1382 75 HOH HOH . D 4 HOH A 283 1383 168 HOH HOH . D 4 HOH A 284 1384 136 HOH HOH . D 4 HOH A 285 1385 161 HOH HOH . D 4 HOH A 286 1386 165 HOH HOH . D 4 HOH A 287 1387 163 HOH HOH . D 4 HOH A 288 1388 174 HOH HOH . D 4 HOH A 289 1389 305 HOH HOH . D 4 HOH A 290 1390 105 HOH HOH . D 4 HOH A 291 1391 111 HOH HOH . D 4 HOH A 292 1392 154 HOH HOH . D 4 HOH A 293 1393 147 HOH HOH . D 4 HOH A 294 1394 266 HOH HOH . D 4 HOH A 295 1395 281 HOH HOH . D 4 HOH A 296 1396 164 HOH HOH . D 4 HOH A 297 1397 151 HOH HOH . D 4 HOH A 298 1398 244 HOH HOH . D 4 HOH A 299 1399 155 HOH HOH . D 4 HOH A 300 1400 196 HOH HOH . D 4 HOH A 301 1401 156 HOH HOH . D 4 HOH A 302 1402 306 HOH HOH . D 4 HOH A 303 1403 275 HOH HOH . D 4 HOH A 304 1404 170 HOH HOH . D 4 HOH A 305 1405 162 HOH HOH . D 4 HOH A 306 1406 255 HOH HOH . D 4 HOH A 307 1407 211 HOH HOH . D 4 HOH A 308 1408 194 HOH HOH . D 4 HOH A 309 1409 132 HOH HOH . D 4 HOH A 310 1410 279 HOH HOH . D 4 HOH A 311 1411 284 HOH HOH . D 4 HOH A 312 1412 303 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 45.723 13.823 78.265 1 41.04 ? C1 GOL 1002 A 1 HETATM 2 O O1 GOL . . . C 3 45.886 15.003 78.99 1 36.53 ? O1 GOL 1002 A 1 HETATM 3 C C2 GOL . . . C 3 44.196 13.582 78.168 1 49.36 ? C2 GOL 1002 A 1 HETATM 4 O O2 GOL . . . C 3 43.524 14.676 77.604 1 55.25 ? O2 GOL 1002 A 1 HETATM 5 C C3 GOL . . . C 3 44.057 12.312 77.3 1 40.35 ? C3 GOL 1002 A 1 HETATM 6 O O3 GOL . . . C 3 42.697 12.216 76.945 1 46.97 ? O3 GOL 1002 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #