data_8JR9
#
_model_server_result.job_id            dFbOQbiZ2XiEH0vL8UaJdg 
_model_server_result.datetime_utc      '2024-12-04 08:31:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jr9 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":601}' 
#
_entry.id    8JR9 
#
_exptl.entry_id    8JR9 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              635.654 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            PCO-371 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JR9 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JR9 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 24 N CYS 22 1_555 D SG CYS 98 N CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 D SG CYS 101 N CYS 99 1_555 D SG CYS 109 N CYS 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf3 E SG CYS 255 R CYS 281 1_555 E SG CYS 325 R CYS 351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
#
_chem_comp.formula           'C29 H32 F3 N5 O6 S' 
_chem_comp.formula_weight    635.654 
_chem_comp.id                KHF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              PCO-371 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-[3,5-dimethyl-4-[2-[[4-oxidanylidene-2-[4-(trifluoromethyloxy)phenyl]-1,3,8-triazaspiro[4.5]dec-1-en-8-yl]sulfonyl]ethyl]phenyl]-5,5-dimethyl-imidazolidine-2,4-dione 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F2 C22 KHF sing 171 n n 
F3 C22 KHF sing 172 n n 
C22 F1 KHF sing 173 n n 
C22 O4 KHF sing 174 n n 
O4 C21 KHF sing 175 n n 
C23 C21 KHF doub 176 n y 
C23 C24 KHF sing 177 n y 
C21 C20 KHF sing 178 n y 
C24 C18 KHF doub 179 n y 
C20 C19 KHF doub 180 n y 
C18 C19 KHF sing 181 n y 
C18 C16 KHF sing 182 n n 
N3 C16 KHF sing 183 n n 
N3 C17 KHF sing 184 n n 
C16 N2 KHF doub 185 n n 
C17 O3 KHF doub 186 n n 
C17 C13 KHF sing 187 n n 
N2 C13 KHF sing 188 n n 
C13 C14 KHF sing 189 n n 
C13 C12 KHF sing 190 n n 
C14 C15 KHF sing 191 n n 
C15 N1 KHF sing 192 n n 
C12 C11 KHF sing 193 n n 
C28 C27 KHF sing 194 n n 
C11 N1 KHF sing 195 n n 
N1 S1 KHF sing 196 n n 
O6 C26 KHF doub 197 n n 
C1 C2 KHF sing 198 n n 
O2 S1 KHF doub 199 n n 
C10 S1 KHF sing 200 n n 
C10 C9 KHF sing 201 n n 
S1 O1 KHF doub 202 n n 
C27 C26 KHF sing 203 n n 
C27 C29 KHF sing 204 n n 
C27 N4 KHF sing 205 n n 
C26 N5 KHF sing 206 n n 
C3 C2 KHF doub 207 n y 
C3 C4 KHF sing 208 n y 
C2 C8 KHF sing 209 n y 
N4 C4 KHF sing 210 n n 
N4 C25 KHF sing 211 n n 
C4 C5 KHF doub 212 n y 
C8 C9 KHF sing 213 n n 
C8 C6 KHF doub 214 n y 
N5 C25 KHF sing 215 n n 
C5 C6 KHF sing 216 n y 
C25 O5 KHF doub 217 n n 
C6 C7 KHF sing 218 n n 
C1 H1 KHF sing 219 n n 
C1 H2 KHF sing 220 n n 
C1 H3 KHF sing 221 n n 
C10 H4 KHF sing 222 n n 
C10 H5 KHF sing 223 n n 
C11 H6 KHF sing 224 n n 
C11 H7 KHF sing 225 n n 
C12 H8 KHF sing 226 n n 
C12 H9 KHF sing 227 n n 
C14 H10 KHF sing 228 n n 
C14 H11 KHF sing 229 n n 
C15 H12 KHF sing 230 n n 
C15 H13 KHF sing 231 n n 
C19 H14 KHF sing 232 n n 
C20 H15 KHF sing 233 n n 
C23 H16 KHF sing 234 n n 
C24 H17 KHF sing 235 n n 
C28 H18 KHF sing 236 n n 
C28 H19 KHF sing 237 n n 
C28 H20 KHF sing 238 n n 
C29 H21 KHF sing 239 n n 
C29 H22 KHF sing 240 n n 
C29 H23 KHF sing 241 n n 
C3 H24 KHF sing 242 n n 
C5 H25 KHF sing 243 n n 
C7 H26 KHF sing 244 n n 
C7 H27 KHF sing 245 n n 
C7 H28 KHF sing 246 n n 
C9 H29 KHF sing 247 n n 
C9 H30 KHF sing 248 n n 
N3 H31 KHF sing 249 n n 
N5 H32 KHF sing 250 n n 
#
_atom_sites.entry_id                     8JR9 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           KHF 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      601 
_pdbx_nonpoly_scheme.auth_seq_num     501 
_pdbx_nonpoly_scheme.pdb_mon_id       KHF 
_pdbx_nonpoly_scheme.auth_mon_id      1 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 KHF . . . F 6 116.482 107.981 108.545 1 20 ? C1 KHF 601 R 1 
HETATM 2 C C10 KHF . . . F 6 116.544 108.955 105.167 1 20 ? C10 KHF 601 R 1 
HETATM 3 C C11 KHF . . . F 6 119.613 111.228 104.926 1 20 ? C11 KHF 601 R 1 
HETATM 4 C C12 KHF . . . F 6 120.534 112.079 104.1 1 20 ? C12 KHF 601 R 1 
HETATM 5 C C13 KHF . . . F 6 120.99 111.28 103.006 1 20 ? C13 KHF 601 R 1 
HETATM 6 C C14 KHF . . . F 6 119.924 110.898 102.117 1 20 ? C14 KHF 601 R 1 
HETATM 7 C C15 KHF . . . F 6 118.77 110.215 102.834 1 20 ? C15 KHF 601 R 1 
HETATM 8 C C16 KHF . . . F 6 122.806 110.074 102.196 1 20 ? C16 KHF 601 R 1 
HETATM 9 C C17 KHF . . . F 6 121.898 112.22 102.32 1 20 ? C17 KHF 601 R 1 
HETATM 10 C C18 KHF . . . F 6 123.77 108.964 101.857 1 20 ? C18 KHF 601 R 1 
HETATM 11 C C19 KHF . . . F 6 125.038 109.005 102.377 1 20 ? C19 KHF 601 R 1 
HETATM 12 C C2 KHF . . . F 6 115.807 106.979 107.629 1 20 ? C2 KHF 601 R 1 
HETATM 13 C C20 KHF . . . F 6 125.939 108.01 102.073 1 20 ? C20 KHF 601 R 1 
HETATM 14 C C21 KHF . . . F 6 125.558 106.979 101.246 1 20 ? C21 KHF 601 R 1 
HETATM 15 C C22 KHF . . . F 6 126.812 105.149 101.998 1 20 ? C22 KHF 601 R 1 
HETATM 16 C C23 KHF . . . F 6 124.284 106.94 100.726 1 20 ? C23 KHF 601 R 1 
HETATM 17 C C24 KHF . . . F 6 123.386 107.939 101.03 1 20 ? C24 KHF 601 R 1 
HETATM 18 C C25 KHF . . . F 6 113.909 102.617 107.893 1 20 ? C25 KHF 601 R 1 
HETATM 19 C C26 KHF . . . F 6 115.68 101.107 107.649 1 20 ? C26 KHF 601 R 1 
HETATM 20 C C27 KHF . . . F 6 116.148 102.453 107.267 1 20 ? C27 KHF 601 R 1 
HETATM 21 C C28 KHF . . . F 6 117.302 102.876 108.14 1 20 ? C28 KHF 601 R 1 
HETATM 22 C C29 KHF . . . F 6 116.562 102.448 105.814 1 20 ? C29 KHF 601 R 1 
HETATM 23 C C3 KHF . . . F 6 115.761 105.653 107.982 1 20 ? C3 KHF 601 R 1 
HETATM 24 C C4 KHF . . . F 6 115.145 104.764 107.138 1 20 ? C4 KHF 601 R 1 
HETATM 25 C C5 KHF . . . F 6 114.583 105.18 105.959 1 20 ? C5 KHF 601 R 1 
HETATM 26 C C6 KHF . . . F 6 114.63 106.501 105.607 1 20 ? C6 KHF 601 R 1 
HETATM 27 C C7 KHF . . . F 6 113.999 106.941 104.295 1 20 ? C7 KHF 601 R 1 
HETATM 28 C C8 KHF . . . F 6 115.232 107.397 106.451 1 20 ? C8 KHF 601 R 1 
HETATM 29 C C9 KHF . . . F 6 115.305 108.853 106.04 1 20 ? C9 KHF 601 R 1 
HETATM 30 F F1 KHF . . . F 6 127.38 104.005 101.519 1 20 ? F1 KHF 601 R 1 
HETATM 31 F F2 KHF . . . F 6 127.717 105.805 102.773 1 20 ? F2 KHF 601 R 1 
HETATM 32 F F3 KHF . . . F 6 125.698 104.847 102.72 1 20 ? F3 KHF 601 R 1 
HETATM 33 N N1 KHF . . . F 6 118.381 110.934 104.108 1 20 ? N1 KHF 601 R 1 
HETATM 34 N N2 KHF . . . F 6 121.546 109.969 102.922 1 20 ? N2 KHF 601 R 1 
HETATM 35 N N3 KHF . . . F 6 123.01 111.472 101.836 1 20 ? N3 KHF 601 R 1 
HETATM 36 N N4 KHF . . . F 6 115.071 103.362 107.433 1 20 ? N4 KHF 601 R 1 
HETATM 37 N N5 KHF . . . F 6 114.303 101.213 108.026 1 20 ? N5 KHF 601 R 1 
HETATM 38 O O1 KHF . . . F 6 116.938 111.408 106.148 1 20 ? O1 KHF 601 R 1 
HETATM 39 O O2 KHF . . . F 6 115.846 111.332 104.197 1 20 ? O2 KHF 601 R 1 
HETATM 40 O O3 KHF . . . F 6 121.744 113.378 102.199 1 20 ? O3 KHF 601 R 1 
HETATM 41 O O4 KHF . . . F 6 126.462 105.965 100.928 1 20 ? O4 KHF 601 R 1 
HETATM 42 O O5 KHF . . . F 6 112.851 103.066 108.118 1 20 ? O5 KHF 601 R 1 
HETATM 43 O O6 KHF . . . F 6 116.332 100.126 107.636 1 20 ? O6 KHF 601 R 1 
HETATM 44 S S1 KHF . . . F 6 116.928 110.68 104.899 1 20 ? S1 KHF 601 R 1 
HETATM 45 H H1 KHF . . . F 6 115.74 108.673 108.932 1 20 ? H1 KHF 601 R 1 
HETATM 46 H H2 KHF . . . F 6 117.235 108.531 107.986 1 20 ? H2 KHF 601 R 1 
HETATM 47 H H3 KHF . . . F 6 116.954 107.453 109.37 1 20 ? H3 KHF 601 R 1 
HETATM 48 H H4 KHF . . . F 6 116.368 108.474 104.212 1 20 ? H4 KHF 601 R 1 
HETATM 49 H H5 KHF . . . F 6 117.376 108.473 105.668 1 20 ? H5 KHF 601 R 1 
HETATM 50 H H6 KHF . . . F 6 120.108 110.297 105.175 1 20 ? H6 KHF 601 R 1 
HETATM 51 H H7 KHF . . . F 6 119.342 111.762 105.829 1 20 ? H7 KHF 601 R 1 
HETATM 52 H H8 KHF . . . F 6 119.981 112.936 103.731 1 20 ? H8 KHF 601 R 1 
HETATM 53 H H9 KHF . . . F 6 121.379 112.399 104.7 1 20 ? H9 KHF 601 R 1 
HETATM 54 H H10 KHF . . . F 6 120.309 110.226 101.356 1 20 ? H10 KHF 601 R 1 
HETATM 55 H H11 KHF . . . F 6 119.546 111.794 101.638 1 20 ? H11 KHF 601 R 1 
HETATM 56 H H12 KHF . . . F 6 119.053 109.199 103.081 1 20 ? H12 KHF 601 R 1 
HETATM 57 H H13 KHF . . . F 6 117.911 110.196 102.172 1 20 ? H13 KHF 601 R 1 
HETATM 58 H H14 KHF . . . F 6 125.331 109.824 103.024 1 20 ? H14 KHF 601 R 1 
HETATM 59 H H15 KHF . . . F 6 126.941 108.044 102.484 1 20 ? H15 KHF 601 R 1 
HETATM 60 H H16 KHF . . . F 6 123.99 106.126 100.076 1 20 ? H16 KHF 601 R 1 
HETATM 61 H H17 KHF . . . F 6 122.382 107.916 100.623 1 20 ? H17 KHF 601 R 1 
HETATM 62 H H18 KHF . . . F 6 116.962 102.954 109.169 1 20 ? H18 KHF 601 R 1 
HETATM 63 H H19 KHF . . . F 6 118.091 102.134 108.074 1 20 ? H19 KHF 601 R 1 
HETATM 64 H H20 KHF . . . F 6 117.68 103.836 107.803 1 20 ? H20 KHF 601 R 1 
HETATM 65 H H21 KHF . . . F 6 117.226 101.609 105.629 1 20 ? H21 KHF 601 R 1 
HETATM 66 H H22 KHF . . . F 6 115.677 102.359 105.191 1 20 ? H22 KHF 601 R 1 
HETATM 67 H H23 KHF . . . F 6 117.075 103.377 105.585 1 20 ? H23 KHF 601 R 1 
HETATM 68 H H24 KHF . . . F 6 116.205 105.313 108.91 1 20 ? H24 KHF 601 R 1 
HETATM 69 H H25 KHF . . . F 6 114.105 104.459 105.306 1 20 ? H25 KHF 601 R 1 
HETATM 70 H H26 KHF . . . F 6 114.763 107.336 103.633 1 20 ? H26 KHF 601 R 1 
HETATM 71 H H27 KHF . . . F 6 113.525 106.086 103.824 1 20 ? H27 KHF 601 R 1 
HETATM 72 H H28 KHF . . . F 6 113.252 107.705 104.488 1 20 ? H28 KHF 601 R 1 
HETATM 73 H H29 KHF . . . F 6 114.428 109.14 105.474 1 20 ? H29 KHF 601 R 1 
HETATM 74 H H30 KHF . . . F 6 115.404 109.497 106.905 1 20 ? H30 KHF 601 R 1 
HETATM 75 H H32 KHF . . . F 6 113.717 100.464 108.336 1 20 ? H32 KHF 601 R 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           75 
#