data_8JS5
#
_model_server_result.job_id            RODFsbesaiVaL9GQCPkffw 
_model_server_result.datetime_utc      '2025-04-23 23:40:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8js5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":302}' 
#
_entry.id    8JS5 
#
_exptl.entry_id    8JS5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JS5 
_cell.length_a            190.443 
_cell.length_b            194.147 
_cell.length_c            269.857 
_cell.Z_PDB               80 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JS5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,K,L,M,N,O,JA,KA 1 1 
C,D,P,Q,R,S,T,LA,MA 2 1 
E,F,U,V,W,X,Y,NA,OA 3 1 
G,H,Z,AA,BA,CA,DA,PA,QA 4 1 
I,J,EA,FA,GA,HA,IA,RA,SA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 K N N 
? 2 O N N 
? 2 P N N 
? 2 T N N 
? 2 U N N 
? 2 Y N N 
? 2 Z N N 
? 2 DA N N 
? 2 EA N N 
? 2 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 200 1_555 K FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc2 B NE2 HIS 199 B HIS 200 1_555 O FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc3 C NE2 HIS 199 C HIS 200 1_555 P FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc4 D NE2 HIS 199 D HIS 200 1_555 T FE HEM . D HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc5 E NE2 HIS 199 E HIS 200 1_555 U FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc6 F NE2 HIS 199 F HIS 200 1_555 Y FE HEM . F HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc7 G NE2 HIS 199 G HIS 200 1_555 Z FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc8 H NE2 HIS 199 H HIS 200 1_555 DA FE HEM . H HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc9 I NE2 HIS 199 I HIS 200 1_555 EA FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc10 J NE2 HIS 199 J HIS 200 1_555 IA FE HEM . J HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     8JS5 
_atom_sites.fract_transf_matrix[1][1]    0.005251 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005151 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 HEM A 1 601 601 HEM HEM . 
L 3 GOL A 1 602 704 GOL GOL . 
M 3 GOL B 1 301 702 GOL GOL . 
N 3 GOL B 1 302 703 GOL GOL . 
O 2 HEM B 1 303 601 HEM HEM . 
P 2 HEM C 1 601 601 HEM HEM . 
Q 3 GOL C 1 602 704 GOL GOL . 
R 3 GOL D 1 301 702 GOL GOL . 
S 3 GOL D 1 302 703 GOL GOL . 
T 2 HEM D 1 303 601 HEM HEM . 
U 2 HEM E 1 601 601 HEM HEM . 
V 3 GOL E 1 602 703 GOL GOL . 
W 3 GOL E 1 603 704 GOL GOL . 
X 3 GOL F 1 301 702 GOL GOL . 
Y 2 HEM F 1 302 601 HEM HEM . 
Z 2 HEM G 1 601 601 HEM HEM . 
AA 3 GOL G 1 602 702 GOL GOL . 
BA 3 GOL G 1 603 704 GOL GOL . 
CA 3 GOL H 1 301 703 GOL GOL . 
DA 2 HEM H 1 302 601 HEM HEM . 
EA 2 HEM I 1 601 601 HEM HEM . 
FA 3 GOL I 1 602 703 GOL GOL . 
GA 3 GOL I 1 603 704 GOL GOL . 
HA 3 GOL J 1 301 702 GOL GOL . 
IA 2 HEM J 1 302 601 HEM HEM . 
JA 4 HOH A 1 701 4 HOH HOH . 
JA 4 HOH A 2 702 1 HOH HOH . 
JA 4 HOH A 3 703 34 HOH HOH . 
JA 4 HOH A 4 704 10 HOH HOH . 
JA 4 HOH A 5 705 2 HOH HOH . 
JA 4 HOH A 6 706 32 HOH HOH . 
KA 4 HOH B 1 401 37 HOH HOH . 
KA 4 HOH B 2 402 22 HOH HOH . 
KA 4 HOH B 3 403 14 HOH HOH . 
KA 4 HOH B 4 404 17 HOH HOH . 
LA 4 HOH C 1 701 11 HOH HOH . 
LA 4 HOH C 2 702 33 HOH HOH . 
LA 4 HOH C 3 703 15 HOH HOH . 
MA 4 HOH D 1 401 36 HOH HOH . 
MA 4 HOH D 2 402 6 HOH HOH . 
MA 4 HOH D 3 403 5 HOH HOH . 
MA 4 HOH D 4 404 13 HOH HOH . 
MA 4 HOH D 5 405 27 HOH HOH . 
NA 4 HOH E 1 701 12 HOH HOH . 
NA 4 HOH E 2 702 7 HOH HOH . 
NA 4 HOH E 3 703 21 HOH HOH . 
NA 4 HOH E 4 704 28 HOH HOH . 
NA 4 HOH E 5 705 23 HOH HOH . 
OA 4 HOH F 1 401 24 HOH HOH . 
OA 4 HOH F 2 402 3 HOH HOH . 
OA 4 HOH F 3 403 35 HOH HOH . 
OA 4 HOH F 4 404 16 HOH HOH . 
OA 4 HOH F 5 405 29 HOH HOH . 
PA 4 HOH G 1 701 25 HOH HOH . 
QA 4 HOH H 1 401 18 HOH HOH . 
QA 4 HOH H 2 402 30 HOH HOH . 
RA 4 HOH I 1 701 8 HOH HOH . 
RA 4 HOH I 2 702 20 HOH HOH . 
RA 4 HOH I 3 703 31 HOH HOH . 
SA 4 HOH J 1 401 19 HOH HOH . 
SA 4 HOH J 2 402 9 HOH HOH . 
SA 4 HOH J 3 403 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . DA 2 -21.377 -128.366 15.971 1 91.84 ? CHA HEM 302 H 1 
HETATM 2 C CHB HEM . . . DA 2 -25.019 -129.458 12.952 1 105.25 ? CHB HEM 302 H 1 
HETATM 3 C CHC HEM . . . DA 2 -28.022 -129.939 16.707 1 104.7 ? CHC HEM 302 H 1 
HETATM 4 C CHD HEM . . . DA 2 -24.501 -128.525 19.7 1 89.19 ? CHD HEM 302 H 1 
HETATM 5 C C1A HEM . . . DA 2 -22.097 -128.614 14.818 1 105.34 ? C1A HEM 302 H 1 
HETATM 6 C C2A HEM . . . DA 2 -21.608 -128.541 13.452 1 111.22 ? C2A HEM 302 H 1 
HETATM 7 C C3A HEM . . . DA 2 -22.615 -128.856 12.63 1 106.55 ? C3A HEM 302 H 1 
HETATM 8 C C4A HEM . . . DA 2 -23.781 -129.115 13.439 1 114.12 ? C4A HEM 302 H 1 
HETATM 9 C CMA HEM . . . DA 2 -22.587 -128.926 11.089 1 112.09 ? CMA HEM 302 H 1 
HETATM 10 C CAA HEM . . . DA 2 -20.16 -128.209 13.044 1 105.25 ? CAA HEM 302 H 1 
HETATM 11 C CBA HEM . . . DA 2 -20.009 -126.828 12.42 1 112.89 ? CBA HEM 302 H 1 
HETATM 12 C CGA HEM . . . DA 2 -18.692 -126.83 11.702 1 123.25 ? CGA HEM 302 H 1 
HETATM 13 O O1A HEM . . . DA 2 -18.384 -125.82 11.018 1 134.5 ? O1A HEM 302 H 1 
HETATM 14 O O2A HEM . . . DA 2 -17.968 -127.854 11.807 1 124.94 ? O2A HEM 302 H 1 
HETATM 15 C C1B HEM . . . DA 2 -26.126 -129.765 13.703 1 108.61 ? C1B HEM 302 H 1 
HETATM 16 C C2B HEM . . . DA 2 -27.347 -130.343 13.204 1 106.82 ? C2B HEM 302 H 1 
HETATM 17 C C3B HEM . . . DA 2 -28.193 -130.502 14.22 1 107.54 ? C3B HEM 302 H 1 
HETATM 18 C C4B HEM . . . DA 2 -27.535 -130 15.42 1 106.64 ? C4B HEM 302 H 1 
HETATM 19 C CMB HEM . . . DA 2 -27.598 -130.75 11.74 1 110.3 ? CMB HEM 302 H 1 
HETATM 20 C CAB HEM . . . DA 2 -29.605 -131.108 14.039 1 105.19 ? CAB HEM 302 H 1 
HETATM 21 C CBB HEM . . . DA 2 -30.415 -131.449 15.044 1 100.6 ? CBB HEM 302 H 1 
HETATM 22 C C1C HEM . . . DA 2 -27.363 -129.463 17.818 1 97.04 ? C1C HEM 302 H 1 
HETATM 23 C C2C HEM . . . DA 2 -27.988 -129.062 19.057 1 89.01 ? C2C HEM 302 H 1 
HETATM 24 C C3C HEM . . . DA 2 -27.021 -128.645 19.9 1 98.5 ? C3C HEM 302 H 1 
HETATM 25 C C4C HEM . . . DA 2 -25.756 -128.805 19.202 1 99.55 ? C4C HEM 302 H 1 
HETATM 26 C CMC HEM . . . DA 2 -29.516 -129.107 19.266 1 75.9 ? CMC HEM 302 H 1 
HETATM 27 C CAC HEM . . . DA 2 -27.106 -128.13 21.365 1 83.08 ? CAC HEM 302 H 1 
HETATM 28 C CBC HEM . . . DA 2 -28.064 -128.444 22.25 1 81.61 ? CBC HEM 302 H 1 
HETATM 29 C C1D HEM . . . DA 2 -23.346 -128.379 18.958 1 94.14 ? C1D HEM 302 H 1 
HETATM 30 C C2D HEM . . . DA 2 -22.055 -127.999 19.482 1 83.65 ? C2D HEM 302 H 1 
HETATM 31 C C3D HEM . . . DA 2 -21.179 -127.95 18.463 1 83.3 ? C3D HEM 302 H 1 
HETATM 32 C C4D HEM . . . DA 2 -21.899 -128.297 17.249 1 99.93 ? C4D HEM 302 H 1 
HETATM 33 C CMD HEM . . . DA 2 -21.805 -127.728 20.978 1 69.16 ? CMD HEM 302 H 1 
HETATM 34 C CAD HEM . . . DA 2 -19.67 -127.588 18.509 1 87.13 ? CAD HEM 302 H 1 
HETATM 35 C CBD HEM . . . DA 2 -19.442 -126.095 18.78 1 78.7 ? CBD HEM 302 H 1 
HETATM 36 C CGD HEM . . . DA 2 -19.312 -125.275 17.519 1 93.41 ? CGD HEM 302 H 1 
HETATM 37 O O1D HEM . . . DA 2 -18.862 -125.81 16.471 1 91.15 ? O1D HEM 302 H 1 
HETATM 38 O O2D HEM . . . DA 2 -19.655 -124.065 17.574 1 82.81 ? O2D HEM 302 H 1 
HETATM 39 N NA HEM . . . DA 2 -23.435 -128.956 14.768 1 115.13 ? NA HEM 302 H 1 
HETATM 40 N NB HEM . . . DA 2 -26.276 -129.563 15.057 1 113.84 ? NB HEM 302 H 1 
HETATM 41 N NC HEM . . . DA 2 -26.004 -129.299 17.942 1 98.6 ? NC HEM 302 H 1 
HETATM 42 N ND HEM . . . DA 2 -23.216 -128.548 17.592 1 108 ? ND HEM 302 H 1 
HETATM 43 FE FE HEM . . . DA 2 -24.716 -129.217 16.378 1 105.91 ? FE HEM 302 H 1 
#
_model_server_stats.io_time_ms              60 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           313 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           43 
#