data_8JS5 # _model_server_result.job_id Vfrqdhh1QZbW_c6cfaR9LA _model_server_result.datetime_utc '2025-04-04 11:44:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8js5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 8JS5 # _exptl.entry_id 8JS5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JS5 _cell.length_a 190.443 _cell.length_b 194.147 _cell.length_c 269.857 _cell.Z_PDB 80 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JS5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 PISA dimeric 2 author_and_software_defined_assembly 4 PISA dimeric 2 author_and_software_defined_assembly 5 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,K,L,M,N,O,JA,KA 1 1 C,D,P,Q,R,S,T,LA,MA 2 1 E,F,U,V,W,X,Y,NA,OA 3 1 G,H,Z,AA,BA,CA,DA,PA,QA 4 1 I,J,EA,FA,GA,HA,IA,RA,SA 5 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 K N N ? 2 O N N ? 2 P N N ? 2 T N N ? 2 U N N ? 2 Y N N ? 2 Z N N ? 2 DA N N ? 2 EA N N ? 2 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 200 1_555 K FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc2 B NE2 HIS 199 B HIS 200 1_555 O FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc3 C NE2 HIS 199 C HIS 200 1_555 P FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? metalc ? metalc4 D NE2 HIS 199 D HIS 200 1_555 T FE HEM . D HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc5 E NE2 HIS 199 E HIS 200 1_555 U FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc6 F NE2 HIS 199 F HIS 200 1_555 Y FE HEM . F HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc7 G NE2 HIS 199 G HIS 200 1_555 Z FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc8 H NE2 HIS 199 H HIS 200 1_555 DA FE HEM . H HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc9 I NE2 HIS 199 I HIS 200 1_555 EA FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc10 J NE2 HIS 199 J HIS 200 1_555 IA FE HEM . J HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8JS5 _atom_sites.fract_transf_matrix[1][1] 0.005251 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005151 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003706 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 2 HEM A 1 601 601 HEM HEM . L 3 GOL A 1 602 704 GOL GOL . M 3 GOL B 1 301 702 GOL GOL . N 3 GOL B 1 302 703 GOL GOL . O 2 HEM B 1 303 601 HEM HEM . P 2 HEM C 1 601 601 HEM HEM . Q 3 GOL C 1 602 704 GOL GOL . R 3 GOL D 1 301 702 GOL GOL . S 3 GOL D 1 302 703 GOL GOL . T 2 HEM D 1 303 601 HEM HEM . U 2 HEM E 1 601 601 HEM HEM . V 3 GOL E 1 602 703 GOL GOL . W 3 GOL E 1 603 704 GOL GOL . X 3 GOL F 1 301 702 GOL GOL . Y 2 HEM F 1 302 601 HEM HEM . Z 2 HEM G 1 601 601 HEM HEM . AA 3 GOL G 1 602 702 GOL GOL . BA 3 GOL G 1 603 704 GOL GOL . CA 3 GOL H 1 301 703 GOL GOL . DA 2 HEM H 1 302 601 HEM HEM . EA 2 HEM I 1 601 601 HEM HEM . FA 3 GOL I 1 602 703 GOL GOL . GA 3 GOL I 1 603 704 GOL GOL . HA 3 GOL J 1 301 702 GOL GOL . IA 2 HEM J 1 302 601 HEM HEM . JA 4 HOH A 1 701 4 HOH HOH . JA 4 HOH A 2 702 1 HOH HOH . JA 4 HOH A 3 703 34 HOH HOH . JA 4 HOH A 4 704 10 HOH HOH . JA 4 HOH A 5 705 2 HOH HOH . JA 4 HOH A 6 706 32 HOH HOH . KA 4 HOH B 1 401 37 HOH HOH . KA 4 HOH B 2 402 22 HOH HOH . KA 4 HOH B 3 403 14 HOH HOH . KA 4 HOH B 4 404 17 HOH HOH . LA 4 HOH C 1 701 11 HOH HOH . LA 4 HOH C 2 702 33 HOH HOH . LA 4 HOH C 3 703 15 HOH HOH . MA 4 HOH D 1 401 36 HOH HOH . MA 4 HOH D 2 402 6 HOH HOH . MA 4 HOH D 3 403 5 HOH HOH . MA 4 HOH D 4 404 13 HOH HOH . MA 4 HOH D 5 405 27 HOH HOH . NA 4 HOH E 1 701 12 HOH HOH . NA 4 HOH E 2 702 7 HOH HOH . NA 4 HOH E 3 703 21 HOH HOH . NA 4 HOH E 4 704 28 HOH HOH . NA 4 HOH E 5 705 23 HOH HOH . OA 4 HOH F 1 401 24 HOH HOH . OA 4 HOH F 2 402 3 HOH HOH . OA 4 HOH F 3 403 35 HOH HOH . OA 4 HOH F 4 404 16 HOH HOH . OA 4 HOH F 5 405 29 HOH HOH . PA 4 HOH G 1 701 25 HOH HOH . QA 4 HOH H 1 401 18 HOH HOH . QA 4 HOH H 2 402 30 HOH HOH . RA 4 HOH I 1 701 8 HOH HOH . RA 4 HOH I 2 702 20 HOH HOH . RA 4 HOH I 3 703 31 HOH HOH . SA 4 HOH J 1 401 19 HOH HOH . SA 4 HOH J 2 402 9 HOH HOH . SA 4 HOH J 3 403 26 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 2 6.205 -79.102 55.919 1 93.2 ? CHA HEM 601 A 1 HETATM 2 C CHB HEM . . . K 2 6.1 -83.69 57.457 1 85.25 ? CHB HEM 601 A 1 HETATM 3 C CHC HEM . . . K 2 4.046 -84.949 53.242 1 86.88 ? CHC HEM 601 A 1 HETATM 4 C CHD HEM . . . K 2 4.01 -80.351 51.772 1 79.04 ? CHD HEM 601 A 1 HETATM 5 C C1A HEM . . . K 2 6.345 -80.222 56.7 1 86.84 ? C1A HEM 601 A 1 HETATM 6 C C2A HEM . . . K 2 6.877 -80.242 58.05 1 84.05 ? C2A HEM 601 A 1 HETATM 7 C C3A HEM . . . K 2 6.832 -81.511 58.474 1 75.66 ? C3A HEM 601 A 1 HETATM 8 C C4A HEM . . . K 2 6.294 -82.327 57.404 1 100.55 ? C4A HEM 601 A 1 HETATM 9 C CMA HEM . . . K 2 7.277 -82.056 59.848 1 101.3 ? CMA HEM 601 A 1 HETATM 10 C CAA HEM . . . K 2 7.325 -78.99 58.845 1 91.01 ? CAA HEM 601 A 1 HETATM 11 C CBA HEM . . . K 2 8.827 -78.892 58.983 1 103.45 ? CBA HEM 601 A 1 HETATM 12 C CGA HEM . . . K 2 9.166 -77.978 60.129 1 103.87 ? CGA HEM 601 A 1 HETATM 13 O O1A HEM . . . K 2 10.268 -78.138 60.712 1 121.66 ? O1A HEM 601 A 1 HETATM 14 O O2A HEM . . . K 2 8.342 -77.094 60.471 1 96.49 ? O2A HEM 601 A 1 HETATM 15 C C1B HEM . . . K 2 5.473 -84.414 56.469 1 92.73 ? C1B HEM 601 A 1 HETATM 16 C C2B HEM . . . K 2 5.072 -85.789 56.57 1 78.84 ? C2B HEM 601 A 1 HETATM 17 C C3B HEM . . . K 2 4.496 -86.16 55.427 1 76.9 ? C3B HEM 601 A 1 HETATM 18 C C4B HEM . . . K 2 4.517 -85.012 54.535 1 81.44 ? C4B HEM 601 A 1 HETATM 19 C CMB HEM . . . K 2 5.267 -86.673 57.809 1 82.58 ? CMB HEM 601 A 1 HETATM 20 C CAB HEM . . . K 2 3.942 -87.584 55.199 1 73.72 ? CAB HEM 601 A 1 HETATM 21 C CBB HEM . . . K 2 3.164 -87.959 54.189 1 69.12 ? CBB HEM 601 A 1 HETATM 22 C C1C HEM . . . K 2 3.976 -83.829 52.44 1 98.02 ? C1C HEM 601 A 1 HETATM 23 C C2C HEM . . . K 2 3.756 -83.839 51.007 1 72.69 ? C2C HEM 601 A 1 HETATM 24 C C3C HEM . . . K 2 3.769 -82.56 50.572 1 71.87 ? C3C HEM 601 A 1 HETATM 25 C C4C HEM . . . K 2 3.959 -81.721 51.74 1 91.97 ? C4C HEM 601 A 1 HETATM 26 C CMC HEM . . . K 2 3.597 -85.16 50.225 1 69.17 ? CMC HEM 601 A 1 HETATM 27 C CAC HEM . . . K 2 3.551 -81.969 49.159 1 75.23 ? CAC HEM 601 A 1 HETATM 28 C CBC HEM . . . K 2 2.725 -82.517 48.252 1 69.88 ? CBC HEM 601 A 1 HETATM 29 C C1D HEM . . . K 2 4.606 -79.632 52.784 1 85.3 ? C1D HEM 601 A 1 HETATM 30 C C2D HEM . . . K 2 4.86 -78.207 52.74 1 77.72 ? C2D HEM 601 A 1 HETATM 31 C C3D HEM . . . K 2 5.474 -77.846 53.879 1 81.8 ? C3D HEM 601 A 1 HETATM 32 C C4D HEM . . . K 2 5.621 -79.057 54.673 1 89.11 ? C4D HEM 601 A 1 HETATM 33 C CMD HEM . . . K 2 4.457 -77.313 51.546 1 60.68 ? CMD HEM 601 A 1 HETATM 34 C CAD HEM . . . K 2 5.924 -76.421 54.335 1 72.06 ? CAD HEM 601 A 1 HETATM 35 C CBD HEM . . . K 2 7.147 -75.829 53.628 1 66.69 ? CBD HEM 601 A 1 HETATM 36 C CGD HEM . . . K 2 8.413 -76.329 54.271 1 82.09 ? CGD HEM 601 A 1 HETATM 37 O O1D HEM . . . K 2 8.514 -76.323 55.529 1 95.05 ? O1D HEM 601 A 1 HETATM 38 O O2D HEM . . . K 2 9.327 -76.733 53.505 1 75.51 ? O2D HEM 601 A 1 HETATM 39 N NA HEM . . . K 2 6 -81.51 56.317 1 95.13 ? NA HEM 601 A 1 HETATM 40 N NB HEM . . . K 2 5.111 -83.959 55.211 1 88.21 ? NB HEM 601 A 1 HETATM 41 N NC HEM . . . K 2 4.093 -82.518 52.87 1 102.39 ? NC HEM 601 A 1 HETATM 42 N ND HEM . . . K 2 5.067 -80.14 53.993 1 82.87 ? ND HEM 601 A 1 HETATM 43 FE FE HEM . . . K 2 4.813 -82.023 54.71 1 86.52 ? FE HEM 601 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 43 #