data_8JS5
#
_model_server_result.job_id            u9lKQ6XVlnJJbPX0BXc2fQ 
_model_server_result.datetime_utc      '2025-04-10 13:54:00' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8js5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"FA","auth_seq_id":602}' 
#
_entry.id    8JS5 
#
_exptl.entry_id    8JS5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    15 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JS5 
_cell.length_a            190.443 
_cell.length_b            194.147 
_cell.length_c            269.857 
_cell.Z_PDB               80 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JS5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    'C 2c 2' 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
PISA dimeric 2 author_and_software_defined_assembly 3 
PISA dimeric 2 author_and_software_defined_assembly 4 
PISA dimeric 2 author_and_software_defined_assembly 5 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,K,L,M,N,O,JA,KA 1 1 
C,D,P,Q,R,S,T,LA,MA 2 1 
E,F,U,V,W,X,Y,NA,OA 3 1 
G,H,Z,AA,BA,CA,DA,PA,QA 4 1 
I,J,EA,FA,GA,HA,IA,RA,SA 5 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 V N N 
? 3 W N N 
? 3 X N N 
? 3 AA N N 
? 3 BA N N 
? 3 CA N N 
? 3 FA N N 
? 3 GA N N 
? 3 HA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 200 1_555 K FE HEM . A HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc2 B NE2 HIS 199 B HIS 200 1_555 O FE HEM . B HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc3 C NE2 HIS 199 C HIS 200 1_555 P FE HEM . C HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.958 ? 
metalc ? metalc4 D NE2 HIS 199 D HIS 200 1_555 T FE HEM . D HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? 
metalc ? metalc5 E NE2 HIS 199 E HIS 200 1_555 U FE HEM . E HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
metalc ? metalc6 F NE2 HIS 199 F HIS 200 1_555 Y FE HEM . F HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
metalc ? metalc7 G NE2 HIS 199 G HIS 200 1_555 Z FE HEM . G HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc8 H NE2 HIS 199 H HIS 200 1_555 DA FE HEM . H HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc9 I NE2 HIS 199 I HIS 200 1_555 EA FE HEM . I HEM 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc10 J NE2 HIS 199 J HIS 200 1_555 IA FE HEM . J HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     8JS5 
_atom_sites.fract_transf_matrix[1][1]    0.005251 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005151 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003706 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 2 HEM A 1 601 601 HEM HEM . 
L 3 GOL A 1 602 704 GOL GOL . 
M 3 GOL B 1 301 702 GOL GOL . 
N 3 GOL B 1 302 703 GOL GOL . 
O 2 HEM B 1 303 601 HEM HEM . 
P 2 HEM C 1 601 601 HEM HEM . 
Q 3 GOL C 1 602 704 GOL GOL . 
R 3 GOL D 1 301 702 GOL GOL . 
S 3 GOL D 1 302 703 GOL GOL . 
T 2 HEM D 1 303 601 HEM HEM . 
U 2 HEM E 1 601 601 HEM HEM . 
V 3 GOL E 1 602 703 GOL GOL . 
W 3 GOL E 1 603 704 GOL GOL . 
X 3 GOL F 1 301 702 GOL GOL . 
Y 2 HEM F 1 302 601 HEM HEM . 
Z 2 HEM G 1 601 601 HEM HEM . 
AA 3 GOL G 1 602 702 GOL GOL . 
BA 3 GOL G 1 603 704 GOL GOL . 
CA 3 GOL H 1 301 703 GOL GOL . 
DA 2 HEM H 1 302 601 HEM HEM . 
EA 2 HEM I 1 601 601 HEM HEM . 
FA 3 GOL I 1 602 703 GOL GOL . 
GA 3 GOL I 1 603 704 GOL GOL . 
HA 3 GOL J 1 301 702 GOL GOL . 
IA 2 HEM J 1 302 601 HEM HEM . 
JA 4 HOH A 1 701 4 HOH HOH . 
JA 4 HOH A 2 702 1 HOH HOH . 
JA 4 HOH A 3 703 34 HOH HOH . 
JA 4 HOH A 4 704 10 HOH HOH . 
JA 4 HOH A 5 705 2 HOH HOH . 
JA 4 HOH A 6 706 32 HOH HOH . 
KA 4 HOH B 1 401 37 HOH HOH . 
KA 4 HOH B 2 402 22 HOH HOH . 
KA 4 HOH B 3 403 14 HOH HOH . 
KA 4 HOH B 4 404 17 HOH HOH . 
LA 4 HOH C 1 701 11 HOH HOH . 
LA 4 HOH C 2 702 33 HOH HOH . 
LA 4 HOH C 3 703 15 HOH HOH . 
MA 4 HOH D 1 401 36 HOH HOH . 
MA 4 HOH D 2 402 6 HOH HOH . 
MA 4 HOH D 3 403 5 HOH HOH . 
MA 4 HOH D 4 404 13 HOH HOH . 
MA 4 HOH D 5 405 27 HOH HOH . 
NA 4 HOH E 1 701 12 HOH HOH . 
NA 4 HOH E 2 702 7 HOH HOH . 
NA 4 HOH E 3 703 21 HOH HOH . 
NA 4 HOH E 4 704 28 HOH HOH . 
NA 4 HOH E 5 705 23 HOH HOH . 
OA 4 HOH F 1 401 24 HOH HOH . 
OA 4 HOH F 2 402 3 HOH HOH . 
OA 4 HOH F 3 403 35 HOH HOH . 
OA 4 HOH F 4 404 16 HOH HOH . 
OA 4 HOH F 5 405 29 HOH HOH . 
PA 4 HOH G 1 701 25 HOH HOH . 
QA 4 HOH H 1 401 18 HOH HOH . 
QA 4 HOH H 2 402 30 HOH HOH . 
RA 4 HOH I 1 701 8 HOH HOH . 
RA 4 HOH I 2 702 20 HOH HOH . 
RA 4 HOH I 3 703 31 HOH HOH . 
SA 4 HOH J 1 401 19 HOH HOH . 
SA 4 HOH J 2 402 9 HOH HOH . 
SA 4 HOH J 3 403 26 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . FA 3 42.935 -44.536 32.514 1 97.93 ? C1 GOL 602 I 1 
HETATM 2 O O1 GOL . . . FA 3 42.966 -45.447 31.443 1 111.47 ? O1 GOL 602 I 1 
HETATM 3 C C2 GOL . . . FA 3 43.468 -45.259 33.816 1 107.68 ? C2 GOL 602 I 1 
HETATM 4 O O2 GOL . . . FA 3 44.86 -45.349 33.867 1 104.64 ? O2 GOL 602 I 1 
HETATM 5 C C3 GOL . . . FA 3 42.857 -44.45 35.014 1 92.76 ? C3 GOL 602 I 1 
HETATM 6 O O3 GOL . . . FA 3 43.645 -44.671 36.144 1 98.43 ? O3 GOL 602 I 1 
#
_model_server_stats.io_time_ms              75 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           6 
#