data_8JSK # _model_server_result.job_id m17qE7icoMbQxQTkvs5obQ _model_server_result.datetime_utc '2024-11-18 20:47:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jsk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8JSK # _exptl.entry_id 8JSK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.166 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "Uridine-3',5'-cyclic monophosphate" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JSK _cell.length_a 133.485 _cell.length_b 133.485 _cell.length_c 34.069 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JSK _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -34.069 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H11 N2 O8 P' _chem_comp.formula_weight 306.166 _chem_comp.id 6SY _chem_comp.mon_nstd_flag . _chem_comp.name "Uridine-3',5'-cyclic monophosphate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms cUMP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C 6SY doub 1 n n C N1 6SY sing 2 n n C C1 6SY sing 3 n n N1 C8 6SY sing 4 n n C1 C2 6SY doub 5 n n C8 O7 6SY doub 6 n n C8 N 6SY sing 7 n n C2 N 6SY sing 8 n n N C3 6SY sing 9 n n C3 O1 6SY sing 10 n n C3 C7 6SY sing 11 n n O1 C4 6SY sing 12 n n C7 O6 6SY sing 13 n n C7 C6 6SY sing 14 n n C4 C6 6SY sing 15 n n C4 C5 6SY sing 16 n n C6 O5 6SY sing 17 n n C5 O2 6SY sing 18 n n O5 P 6SY sing 19 n n O3 P 6SY doub 20 n n O2 P 6SY sing 21 n n P O4 6SY sing 22 n n N1 H1 6SY sing 23 n n C2 H2 6SY sing 24 n n C4 H3 6SY sing 25 n n C5 H4 6SY sing 26 n n C5 H5 6SY sing 27 n n C6 H6 6SY sing 28 n n O4 H7 6SY sing 29 n n C1 H8 6SY sing 30 n n C3 H9 6SY sing 31 n n C7 H10 6SY sing 32 n n O6 H11 6SY sing 33 n n # _atom_sites.entry_id 8JSK _atom_sites.fract_transf_matrix[1][1] 0.007491 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029352 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 6SY A 1 201 201 6SY 6SY . D 3 HOH A 1 301 325 HOH HOH . D 3 HOH A 2 302 306 HOH HOH . D 3 HOH A 3 303 304 HOH HOH . D 3 HOH A 4 304 337 HOH HOH . D 3 HOH A 5 305 322 HOH HOH . D 3 HOH A 6 306 332 HOH HOH . D 3 HOH A 7 307 314 HOH HOH . D 3 HOH A 8 308 316 HOH HOH . D 3 HOH A 9 309 340 HOH HOH . D 3 HOH A 10 310 329 HOH HOH . D 3 HOH A 11 311 301 HOH HOH . D 3 HOH A 12 312 311 HOH HOH . D 3 HOH A 13 313 324 HOH HOH . D 3 HOH A 14 314 333 HOH HOH . D 3 HOH A 15 315 321 HOH HOH . D 3 HOH A 16 316 303 HOH HOH . D 3 HOH A 17 317 331 HOH HOH . D 3 HOH A 18 318 305 HOH HOH . D 3 HOH A 19 319 308 HOH HOH . D 3 HOH A 20 320 320 HOH HOH . D 3 HOH A 21 321 335 HOH HOH . D 3 HOH A 22 322 326 HOH HOH . D 3 HOH A 23 323 315 HOH HOH . D 3 HOH A 24 324 317 HOH HOH . D 3 HOH A 25 325 310 HOH HOH . D 3 HOH A 26 326 336 HOH HOH . D 3 HOH A 27 327 334 HOH HOH . D 3 HOH A 28 328 302 HOH HOH . D 3 HOH A 29 329 327 HOH HOH . D 3 HOH A 30 330 351 HOH HOH . D 3 HOH A 31 331 345 HOH HOH . D 3 HOH A 32 332 319 HOH HOH . D 3 HOH A 33 333 312 HOH HOH . D 3 HOH A 34 334 344 HOH HOH . D 3 HOH A 35 335 343 HOH HOH . D 3 HOH A 36 336 324 HOH HOH . D 3 HOH A 37 337 300 HOH HOH . D 3 HOH A 38 338 330 HOH HOH . D 3 HOH A 39 339 339 HOH HOH . D 3 HOH A 40 340 325 HOH HOH . D 3 HOH A 41 341 323 HOH HOH . D 3 HOH A 42 342 318 HOH HOH . D 3 HOH A 43 343 309 HOH HOH . D 3 HOH A 44 344 348 HOH HOH . D 3 HOH A 45 345 313 HOH HOH . D 3 HOH A 46 346 328 HOH HOH . D 3 HOH A 47 347 341 HOH HOH . D 3 HOH A 48 348 350 HOH HOH . D 3 HOH A 49 349 347 HOH HOH . D 3 HOH A 50 350 349 HOH HOH . D 3 HOH A 51 351 323 HOH HOH . E 3 HOH B 1 201 332 HOH HOH . E 3 HOH B 2 202 321 HOH HOH . E 3 HOH B 3 203 313 HOH HOH . E 3 HOH B 4 204 346 HOH HOH . E 3 HOH B 5 205 310 HOH HOH . E 3 HOH B 6 206 309 HOH HOH . E 3 HOH B 7 207 306 HOH HOH . E 3 HOH B 8 208 319 HOH HOH . E 3 HOH B 9 209 300 HOH HOH . E 3 HOH B 10 210 307 HOH HOH . E 3 HOH B 11 211 302 HOH HOH . E 3 HOH B 12 212 308 HOH HOH . E 3 HOH B 13 213 307 HOH HOH . E 3 HOH B 14 214 318 HOH HOH . E 3 HOH B 15 215 301 HOH HOH . E 3 HOH B 16 216 317 HOH HOH . E 3 HOH B 17 217 304 HOH HOH . E 3 HOH B 18 218 320 HOH HOH . E 3 HOH B 19 219 327 HOH HOH . E 3 HOH B 20 220 303 HOH HOH . E 3 HOH B 21 221 305 HOH HOH . E 3 HOH B 22 222 312 HOH HOH . E 3 HOH B 23 223 331 HOH HOH . E 3 HOH B 24 224 314 HOH HOH . E 3 HOH B 25 225 315 HOH HOH . E 3 HOH B 26 226 342 HOH HOH . E 3 HOH B 27 227 333 HOH HOH . E 3 HOH B 28 228 322 HOH HOH . E 3 HOH B 29 229 311 HOH HOH . E 3 HOH B 30 230 330 HOH HOH . E 3 HOH B 31 231 338 HOH HOH . E 3 HOH B 32 232 326 HOH HOH . E 3 HOH B 33 233 334 HOH HOH . E 3 HOH B 34 234 329 HOH HOH . E 3 HOH B 35 235 328 HOH HOH . E 3 HOH B 36 236 316 HOH HOH . E 3 HOH B 37 237 335 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 6SY . . . C 2 -23.002 -7.988 -40.459 1 32.89 0 N1 6SY 201 A 1 HETATM 2 C C2 6SY . . . C 2 -23.713 -9.126 -38.152 1 31.24 0 C2 6SY 201 A 1 HETATM 3 C C4 6SY . . . C 2 -22.92 -13.376 -40.329 1 26.88 0 C4 6SY 201 A 1 HETATM 4 C C5 6SY . . . C 2 -22.06 -14.088 -41.349 1 26.15 0 C5 6SY 201 A 1 HETATM 5 C C6 6SY . . . C 2 -24.224 -12.955 -40.935 1 26.7 0 C6 6SY 201 A 1 HETATM 6 O O2 6SY . . . C 2 -22.786 -15.202 -41.967 1 25.84 0 O2 6SY 201 A 1 HETATM 7 O O4 6SY . . . C 2 -24.964 -16.209 -42.804 1 25.08 0 O4 6SY 201 A 1 HETATM 8 P P 6SY . . . C 2 -24.253 -14.923 -42.603 1 26.68 0 P 6SY 201 A 1 HETATM 9 O O7 6SY . . . C 2 -22.737 -10.019 -41.417 1 42.91 0 O7 6SY 201 A 1 HETATM 10 C C8 6SY . . . C 2 -23.032 -9.356 -40.442 1 30.86 0 C8 6SY 201 A 1 HETATM 11 C C 6SY . . . C 2 -23.295 -7.13 -39.414 1 33.64 0 C 6SY 201 A 1 HETATM 12 O O 6SY . . . C 2 -23.223 -5.916 -39.606 1 29.61 0 O 6SY 201 A 1 HETATM 13 N N 6SY . . . C 2 -23.4 -9.925 -39.247 1 29.98 0 N 6SY 201 A 1 HETATM 14 C C1 6SY . . . C 2 -23.672 -7.781 -38.189 1 30.51 0 C1 6SY 201 A 1 HETATM 15 C C3 6SY . . . C 2 -23.482 -11.484 -39.169 1 28.75 0 C3 6SY 201 A 1 HETATM 16 C C7 6SY . . . C 2 -24.757 -12.115 -39.773 1 25.84 0 C7 6SY 201 A 1 HETATM 17 O O6 6SY . . . C 2 -25.441 -12.887 -38.797 1 22.27 0 O6 6SY 201 A 1 HETATM 18 O O1 6SY . . . C 2 -22.407 -12.11 -39.867 1 27.86 0 O1 6SY 201 A 1 HETATM 19 O O5 6SY . . . C 2 -24.962 -14.115 -41.396 1 24.83 0 O5 6SY 201 A 1 HETATM 20 O O3 6SY . . . C 2 -24.098 -14.01 -43.779 1 27.16 0 O3 6SY 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #