data_8JT6 # _model_server_result.job_id XE8i3jG6R8JNbUfqEEQJ0A _model_server_result.datetime_utc '2024-10-11 00:22:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jt6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":503}' # _entry.id 8JT6 # _exptl.entry_id 8JT6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JT6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JT6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 K N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id E _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 231 _struct_conn.ptnr1_auth_asym_id R _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 109 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 309 _struct_conn.ptnr2_auth_asym_id R _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 187 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8JT6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 CLR R 1 501 602 CLR CLR . G 6 CLR R 1 502 603 CLR CLR . H 6 CLR R 1 503 604 CLR CLR . I 6 CLR R 1 504 605 CLR CLR . J 7 PLM R 1 505 606 PLM PLM . K 6 CLR R 1 506 608 CLR CLR . L 7 PLM R 1 507 614 PLM PLM . M 8 J40 R 1 508 601 J40 J40 . N 9 EZX R 1 509 1 EZX LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . H 6 131.52 122.151 136.906 1 26.42 ? C1 CLR 503 R 1 HETATM 2 C C2 CLR . . . H 6 131.431 121.039 135.783 1 26.42 ? C2 CLR 503 R 1 HETATM 3 C C3 CLR . . . H 6 130.146 120.171 135.955 1 26.42 ? C3 CLR 503 R 1 HETATM 4 C C4 CLR . . . H 6 128.894 121.074 135.837 1 26.42 ? C4 CLR 503 R 1 HETATM 5 C C5 CLR . . . H 6 128.937 122.194 136.826 1 26.42 ? C5 CLR 503 R 1 HETATM 6 C C6 CLR . . . H 6 127.738 122.578 137.533 1 26.42 ? C6 CLR 503 R 1 HETATM 7 C C7 CLR . . . H 6 127.757 123.69 138.539 1 26.42 ? C7 CLR 503 R 1 HETATM 8 C C8 CLR . . . H 6 128.946 124.596 138.439 1 26.42 ? C8 CLR 503 R 1 HETATM 9 C C9 CLR . . . H 6 130.246 123.737 138.22 1 26.42 ? C9 CLR 503 R 1 HETATM 10 C C10 CLR . . . H 6 130.273 123.091 136.968 1 26.42 ? C10 CLR 503 R 1 HETATM 11 C C11 CLR . . . H 6 131.642 124.777 138.43 1 26.42 ? C11 CLR 503 R 1 HETATM 12 C C12 CLR . . . H 6 131.391 126.012 139.633 1 26.42 ? C12 CLR 503 R 1 HETATM 13 C C13 CLR . . . H 6 130.049 126.474 139.694 1 26.42 ? C13 CLR 503 R 1 HETATM 14 C C14 CLR . . . H 6 129.102 125.324 139.7 1 26.42 ? C14 CLR 503 R 1 HETATM 15 C C15 CLR . . . H 6 127.71 125.923 140.176 1 26.42 ? C15 CLR 503 R 1 HETATM 16 C C16 CLR . . . H 6 128.189 127.157 141.181 1 26.42 ? C16 CLR 503 R 1 HETATM 17 C C17 CLR . . . H 6 129.741 127.185 141.072 1 26.42 ? C17 CLR 503 R 1 HETATM 18 C C18 CLR . . . H 6 129.79 127.424 138.517 1 26.42 ? C18 CLR 503 R 1 HETATM 19 C C19 CLR . . . H 6 130.328 124.087 135.753 1 26.42 ? C19 CLR 503 R 1 HETATM 20 C C20 CLR . . . H 6 130.202 128.601 141.229 1 26.42 ? C20 CLR 503 R 1 HETATM 21 C C21 CLR . . . H 6 131.714 128.772 141.022 1 26.42 ? C21 CLR 503 R 1 HETATM 22 C C22 CLR . . . H 6 129.918 129.081 142.682 1 26.42 ? C22 CLR 503 R 1 HETATM 23 C C23 CLR . . . H 6 129.619 130.609 142.694 1 26.42 ? C23 CLR 503 R 1 HETATM 24 C C24 CLR . . . H 6 129.198 131.017 144.107 1 26.42 ? C24 CLR 503 R 1 HETATM 25 C C25 CLR . . . H 6 129.467 132.531 144.367 1 26.42 ? C25 CLR 503 R 1 HETATM 26 C C26 CLR . . . H 6 130.995 132.767 144.632 1 26.42 ? C26 CLR 503 R 1 HETATM 27 C C27 CLR . . . H 6 129.005 133.383 143.168 1 26.42 ? C27 CLR 503 R 1 HETATM 28 O O1 CLR . . . H 6 130.109 119.213 134.981 1 26.42 ? O1 CLR 503 R 1 HETATM 29 H H11 CLR . . . H 6 131.627 121.657 137.86 1 26.42 ? H11 CLR 503 R 1 HETATM 30 H H12 CLR . . . H 6 132.403 122.754 136.723 1 26.42 ? H12 CLR 503 R 1 HETATM 31 H H21 CLR . . . H 6 131.409 121.52 134.806 1 26.42 ? H21 CLR 503 R 1 HETATM 32 H H22 CLR . . . H 6 132.303 120.399 135.851 1 26.42 ? H22 CLR 503 R 1 HETATM 33 H H3 CLR . . . H 6 130.158 119.701 136.926 1 26.42 ? H3 CLR 503 R 1 HETATM 34 H H41 CLR . . . H 6 128.849 121.489 134.832 1 26.42 ? H41 CLR 503 R 1 HETATM 35 H H42 CLR . . . H 6 128.011 120.478 136.02 1 26.42 ? H42 CLR 503 R 1 HETATM 36 H H6 CLR . . . H 6 126.799 122.083 137.301 1 26.42 ? H6 CLR 503 R 1 HETATM 37 H H71 CLR . . . H 6 126.853 124.277 138.386 1 26.42 ? H71 CLR 503 R 1 HETATM 38 H H72 CLR . . . H 6 127.733 123.253 139.538 1 26.42 ? H72 CLR 503 R 1 HETATM 39 H H8 CLR . . . H 6 128.784 125.274 137.615 1 26.42 ? H8 CLR 503 R 1 HETATM 40 H H9 CLR . . . H 6 130.274 122.982 138.988 1 26.42 ? H9 CLR 503 R 1 HETATM 41 H H111 CLR . . . H 6 132.481 124.164 138.74 1 26.42 ? H111 CLR 503 R 1 HETATM 42 H H112 CLR . . . H 6 131.89 125.26 137.49 1 26.42 ? H112 CLR 503 R 1 HETATM 43 H H121 CLR . . . H 6 131.679 125.619 140.607 1 26.42 ? H121 CLR 503 R 1 HETATM 44 H H122 CLR . . . H 6 132.037 126.838 139.376 1 26.42 ? H122 CLR 503 R 1 HETATM 45 H H14 CLR . . . H 6 129.438 124.621 140.449 1 26.42 ? H14 CLR 503 R 1 HETATM 46 H H151 CLR . . . H 6 127.146 126.312 139.332 1 26.42 ? H151 CLR 503 R 1 HETATM 47 H H152 CLR . . . H 6 127.139 125.184 140.725 1 26.42 ? H152 CLR 503 R 1 HETATM 48 H H161 CLR . . . H 6 127.771 128.092 140.85 1 26.42 ? H161 CLR 503 R 1 HETATM 49 H H162 CLR . . . H 6 127.883 126.938 142.211 1 26.42 ? H162 CLR 503 R 1 HETATM 50 H H17 CLR . . . H 6 130.156 126.586 141.878 1 26.42 ? H17 CLR 503 R 1 HETATM 51 H H181 CLR . . . H 6 128.739 127.669 138.464 1 26.42 ? H181 CLR 503 R 1 HETATM 52 H H182 CLR . . . H 6 130.096 126.947 137.593 1 26.42 ? H182 CLR 503 R 1 HETATM 53 H H183 CLR . . . H 6 130.366 128.339 138.635 1 26.42 ? H183 CLR 503 R 1 HETATM 54 H H191 CLR . . . H 6 131.263 123.955 135.222 1 26.42 ? H191 CLR 503 R 1 HETATM 55 H H192 CLR . . . H 6 130.254 125.121 136.096 1 26.42 ? H192 CLR 503 R 1 HETATM 56 H H193 CLR . . . H 6 129.497 123.873 135.075 1 26.42 ? H193 CLR 503 R 1 HETATM 57 H H20 CLR . . . H 6 129.673 129.235 140.539 1 26.42 ? H20 CLR 503 R 1 HETATM 58 H H211 CLR . . . H 6 131.928 128.94 139.982 1 26.42 ? H211 CLR 503 R 1 HETATM 59 H H212 CLR . . . H 6 132.229 127.886 141.362 1 26.42 ? H212 CLR 503 R 1 HETATM 60 H H213 CLR . . . H 6 132.063 129.633 141.599 1 26.42 ? H213 CLR 503 R 1 HETATM 61 H H221 CLR . . . H 6 129.065 128.55 143.112 1 26.42 ? H221 CLR 503 R 1 HETATM 62 H H222 CLR . . . H 6 130.798 128.888 143.298 1 26.42 ? H222 CLR 503 R 1 HETATM 63 H H231 CLR . . . H 6 130.509 131.151 142.4 1 26.42 ? H231 CLR 503 R 1 HETATM 64 H H232 CLR . . . H 6 128.821 130.826 142.005 1 26.42 ? H232 CLR 503 R 1 HETATM 65 H H241 CLR . . . H 6 129.755 130.431 144.825 1 26.42 ? H241 CLR 503 R 1 HETATM 66 H H242 CLR . . . H 6 128.132 130.818 144.232 1 26.42 ? H242 CLR 503 R 1 HETATM 67 H H25 CLR . . . H 6 128.911 132.836 145.244 1 26.42 ? H25 CLR 503 R 1 HETATM 68 H H261 CLR . . . H 6 131.322 132.137 145.466 1 26.42 ? H261 CLR 503 R 1 HETATM 69 H H262 CLR . . . H 6 131.57 132.512 143.738 1 26.42 ? H262 CLR 503 R 1 HETATM 70 H H263 CLR . . . H 6 131.161 133.809 144.882 1 26.42 ? H263 CLR 503 R 1 HETATM 71 H H271 CLR . . . H 6 128.003 133.106 142.9 1 26.42 ? H271 CLR 503 R 1 HETATM 72 H H272 CLR . . . H 6 129.672 133.225 142.312 1 26.42 ? H272 CLR 503 R 1 HETATM 73 H H273 CLR . . . H 6 129.025 134.438 143.449 1 26.42 ? H273 CLR 503 R 1 HETATM 74 H H1 CLR . . . H 6 130.878 118.665 135.048 1 26.42 ? H1 CLR 503 R 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 74 #