data_8JT6
#
_model_server_result.job_id            SaZ1hvnvAC-TqMAT6O01eg 
_model_server_result.datetime_utc      '2024-10-11 00:29:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jt6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":508}' 
#
_entry.id    8JT6 
#
_exptl.entry_id    8JT6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              854.895 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JT6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JT6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      8 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            E 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             231 
_struct_conn.ptnr1_auth_asym_id             R 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              109 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            E 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             309 
_struct_conn.ptnr2_auth_asym_id             R 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              187 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.031 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C39 H68 O16 P2' 
_chem_comp.formula_weight    854.895 
_chem_comp.id                J40 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2R)-1-[oxidanyl-[(2R,3R,5S,6R)-2,3,5,6-tetrakis(oxidanyl)-4-phosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-3-tetradecanoyloxy-propan-2-yl] (5E,8E)-hexadeca-5,8,11,14-tetraenoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O12 P1 J40 doub 304 n n 
O3 C3 J40 sing 305 n n 
C3 C2 J40 sing 306 n n 
C3 C4 J40 sing 307 n n 
C2 C1 J40 sing 308 n n 
C2 O2 J40 sing 309 n n 
C1 O1 J40 sing 310 n n 
C1 C6 J40 sing 311 n n 
O1 P1 J40 sing 312 n n 
P1 O13 J40 sing 313 n n 
P1 O11 J40 sing 314 n n 
C7 O13 J40 sing 315 n n 
C7 C8 J40 sing 316 n n 
O4 C4 J40 sing 317 n n 
O4 P4 J40 sing 318 n n 
C4 C5 J40 sing 319 n n 
C5 C6 J40 sing 320 n n 
C5 O5 J40 sing 321 n n 
C26 C25 J40 sing 322 n n 
C6 O6 J40 sing 323 n n 
C25 C24 J40 doub 324 z n 
O17 C10 J40 doub 325 n n 
O42 P4 J40 doub 326 n n 
P4 O41 J40 sing 327 n n 
P4 O43 J40 sing 328 n n 
C8 C9 J40 sing 329 n n 
C8 O16 J40 sing 330 n n 
C9 O18 J40 sing 331 n n 
C10 O16 J40 sing 332 n n 
C10 C12 J40 sing 333 n n 
C23 C24 J40 sing 334 n n 
C23 C22 J40 sing 335 n n 
C17 C16 J40 sing 336 n n 
C17 C18 J40 sing 337 n n 
C22 C21 J40 doub 338 z n 
C13 C12 J40 sing 339 n n 
C13 C14 J40 sing 340 n n 
O18 C11 J40 sing 341 n n 
C16 C15 J40 doub 342 e n 
C19 C18 J40 doub 343 e n 
C19 C20 J40 sing 344 n n 
C15 C14 J40 sing 345 n n 
C21 C20 J40 sing 346 n n 
C11 O19 J40 doub 347 n n 
C11 C31 J40 sing 348 n n 
C31 C32 J40 sing 349 n n 
C32 C33 J40 sing 350 n n 
C33 C34 J40 sing 351 n n 
C34 C35 J40 sing 352 n n 
C35 C36 J40 sing 353 n n 
C36 C37 J40 sing 354 n n 
C37 C38 J40 sing 355 n n 
C38 C39 J40 sing 356 n n 
C39 C40 J40 sing 357 n n 
C40 C41 J40 sing 358 n n 
C42 C41 J40 sing 359 n n 
C42 C43 J40 sing 360 n n 
O11 H1 J40 sing 361 n n 
O6 H2 J40 sing 362 n n 
C1 H3 J40 sing 363 n n 
C6 H4 J40 sing 364 n n 
C2 H5 J40 sing 365 n n 
O2 H6 J40 sing 366 n n 
C3 H7 J40 sing 367 n n 
O3 H8 J40 sing 368 n n 
C4 H9 J40 sing 369 n n 
O41 H10 J40 sing 370 n n 
O43 H11 J40 sing 371 n n 
C5 H12 J40 sing 372 n n 
O5 H13 J40 sing 373 n n 
C7 H14 J40 sing 374 n n 
C7 H15 J40 sing 375 n n 
C8 H16 J40 sing 376 n n 
C9 H17 J40 sing 377 n n 
C9 H18 J40 sing 378 n n 
C12 H19 J40 sing 379 n n 
C12 H20 J40 sing 380 n n 
C13 H21 J40 sing 381 n n 
C13 H22 J40 sing 382 n n 
C14 H23 J40 sing 383 n n 
C14 H24 J40 sing 384 n n 
C15 H25 J40 sing 385 n n 
C16 H27 J40 sing 386 n n 
C17 H29 J40 sing 387 n n 
C17 H30 J40 sing 388 n n 
C18 H31 J40 sing 389 n n 
C19 H33 J40 sing 390 n n 
C20 H35 J40 sing 391 n n 
C20 H36 J40 sing 392 n n 
C21 H37 J40 sing 393 n n 
C22 H39 J40 sing 394 n n 
C23 H41 J40 sing 395 n n 
C23 H42 J40 sing 396 n n 
C24 H43 J40 sing 397 n n 
C31 H45 J40 sing 398 n n 
C31 H46 J40 sing 399 n n 
C32 H47 J40 sing 400 n n 
C32 H48 J40 sing 401 n n 
C33 H49 J40 sing 402 n n 
C33 H50 J40 sing 403 n n 
C34 H51 J40 sing 404 n n 
C34 H52 J40 sing 405 n n 
C35 H53 J40 sing 406 n n 
C35 H54 J40 sing 407 n n 
C36 H55 J40 sing 408 n n 
C36 H56 J40 sing 409 n n 
C37 H57 J40 sing 410 n n 
C37 H58 J40 sing 411 n n 
C38 H59 J40 sing 412 n n 
C38 H60 J40 sing 413 n n 
C39 H61 J40 sing 414 n n 
C39 H62 J40 sing 415 n n 
C40 H63 J40 sing 416 n n 
C40 H64 J40 sing 417 n n 
C25 H65 J40 sing 418 n n 
C26 H67 J40 sing 419 n n 
C26 H68 J40 sing 420 n n 
C26 H69 J40 sing 421 n n 
C41 H70 J40 sing 422 n n 
C41 H71 J40 sing 423 n n 
C42 H72 J40 sing 424 n n 
C42 H73 J40 sing 425 n n 
C43 H74 J40 sing 426 n n 
C43 H75 J40 sing 427 n n 
C43 H76 J40 sing 428 n n 
#
_atom_sites.entry_id                     8JT6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 6 CLR R 1 501 602 CLR CLR . 
G 6 CLR R 1 502 603 CLR CLR . 
H 6 CLR R 1 503 604 CLR CLR . 
I 6 CLR R 1 504 605 CLR CLR . 
J 7 PLM R 1 505 606 PLM PLM . 
K 6 CLR R 1 506 608 CLR CLR . 
L 7 PLM R 1 507 614 PLM PLM . 
M 8 J40 R 1 508 601 J40 J40 . 
N 9 EZX R 1 509 1 EZX LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O12 J40 . . . M 8 116.454 140.778 118.129 1 155.81 ? O12 J40 508 R 1 
HETATM 2 P P1 J40 . . . M 8 117.283 142.014 118.173 1 155.81 ? P1 J40 508 R 1 
HETATM 3 O O13 J40 . . . M 8 117.793 142.451 119.639 1 155.81 ? O13 J40 508 R 1 
HETATM 4 O O11 J40 . . . M 8 116.562 143.103 117.456 1 155.81 -1 O11 J40 508 R 1 
HETATM 5 O O6 J40 . . . M 8 120.881 143.309 118.482 1 155.81 ? O6 J40 508 R 1 
HETATM 6 O O1 J40 . . . M 8 118.655 141.841 117.374 1 155.81 ? O1 J40 508 R 1 
HETATM 7 C C1 J40 . . . M 8 119.843 141.189 117.825 1 155.81 ? C1 J40 508 R 1 
HETATM 8 C C6 J40 . . . M 8 120.634 141.986 118.877 1 155.81 ? C6 J40 508 R 1 
HETATM 9 C C2 J40 . . . M 8 119.706 139.679 118.172 1 155.81 ? C2 J40 508 R 1 
HETATM 10 O O2 J40 . . . M 8 118.772 139.419 119.195 1 155.81 ? O2 J40 508 R 1 
HETATM 11 C C3 J40 . . . M 8 121.069 139.077 118.6 1 155.81 ? C3 J40 508 R 1 
HETATM 12 O O3 J40 . . . M 8 120.829 137.805 119.176 1 155.81 ? O3 J40 508 R 1 
HETATM 13 C C4 J40 . . . M 8 121.906 139.958 119.589 1 155.81 ? C4 J40 508 R 1 
HETATM 14 O O4 J40 . . . M 8 123.153 139.234 119.816 1 155.81 ? O4 J40 508 R 1 
HETATM 15 P P4 J40 . . . M 8 124.535 139.888 120.338 1 155.81 ? P4 J40 508 R 1 
HETATM 16 O O41 J40 . . . M 8 125.044 140.863 119.352 1 155.81 ? O41 J40 508 R 1 
HETATM 17 O O42 J40 . . . M 8 125.569 138.855 120.635 1 155.81 -1 O42 J40 508 R 1 
HETATM 18 O O43 J40 . . . M 8 124.281 140.631 121.582 1 155.81 ? O43 J40 508 R 1 
HETATM 19 C C5 J40 . . . M 8 122.035 141.376 118.94 1 155.81 ? C5 J40 508 R 1 
HETATM 20 O O5 J40 . . . M 8 122.903 142.32 119.56 1 155.81 ? O5 J40 508 R 1 
HETATM 21 C C7 J40 . . . M 8 117.38 141.732 120.823 1 155.81 ? C7 J40 508 R 1 
HETATM 22 C C8 J40 . . . M 8 115.857 141.891 121.096 1 155.81 ? C8 J40 508 R 1 
HETATM 23 C C9 J40 . . . M 8 115.315 140.813 122.1 1 155.81 ? C9 J40 508 R 1 
HETATM 24 O O16 J40 . . . M 8 115.665 143.246 121.566 1 155.81 ? O16 J40 508 R 1 
HETATM 25 C C10 J40 . . . M 8 115.244 144.168 120.671 1 155.81 ? C10 J40 508 R 1 
HETATM 26 O O17 J40 . . . M 8 114.503 143.979 119.729 1 155.81 ? O17 J40 508 R 1 
HETATM 27 O O18 J40 . . . M 8 114.859 141.359 123.358 1 155.81 ? O18 J40 508 R 1 
HETATM 28 C C11 J40 . . . M 8 113.641 141.934 123.458 1 155.81 ? C11 J40 508 R 1 
HETATM 29 O O19 J40 . . . M 8 112.769 141.898 122.615 1 155.81 ? O19 J40 508 R 1 
HETATM 30 C C12 J40 . . . M 8 115.739 145.443 120.918 1 155.81 ? C12 J40 508 R 1 
HETATM 31 C C31 J40 . . . M 8 113.311 142.268 124.775 1 155.81 ? C31 J40 508 R 1 
HETATM 32 H H2 J40 . . . M 8 121.843 143.225 118.592 1 155.81 ? H2 J40 508 R 1 
HETATM 33 H H3 J40 . . . M 8 120.504 141.183 116.95 1 155.81 ? H3 J40 508 R 1 
HETATM 34 H H4 J40 . . . M 8 120.17 141.934 119.87 1 155.81 ? H4 J40 508 R 1 
HETATM 35 H H5 J40 . . . M 8 119.393 139.164 117.256 1 155.81 ? H5 J40 508 R 1 
HETATM 36 H H6 J40 . . . M 8 119.281 139.326 120.017 1 155.81 ? H6 J40 508 R 1 
HETATM 37 H H7 J40 . . . M 8 121.651 138.96 117.678 1 155.81 ? H7 J40 508 R 1 
HETATM 38 H H8 J40 . . . M 8 120.651 138.058 120.098 1 155.81 ? H8 J40 508 R 1 
HETATM 39 H H9 J40 . . . M 8 121.34 140.038 120.524 1 155.81 ? H9 J40 508 R 1 
HETATM 40 H H12 J40 . . . M 8 122.405 141.236 117.918 1 155.81 ? H12 J40 508 R 1 
HETATM 41 H H13 J40 . . . M 8 123.756 141.871 119.429 1 155.81 ? H13 J40 508 R 1 
HETATM 42 H H14 J40 . . . M 8 117.941 142.105 121.687 1 155.81 ? H14 J40 508 R 1 
HETATM 43 H H15 J40 . . . M 8 117.621 140.666 120.74 1 155.81 ? H15 J40 508 R 1 
HETATM 44 H H16 J40 . . . M 8 115.293 141.726 120.171 1 155.81 ? H16 J40 508 R 1 
HETATM 45 H H17 J40 . . . M 8 116.114 140.092 122.304 1 155.81 ? H17 J40 508 R 1 
HETATM 46 H H18 J40 . . . M 8 114.51 140.247 121.619 1 155.81 ? H18 J40 508 R 1 
HETATM 47 H H19 J40 . . . M 8 115.463 146.296 120.304 1 155.81 ? H19 J40 508 R 1 
HETATM 48 H H20 J40 . . . M 8 116.397 145.642 121.759 1 155.81 ? H20 J40 508 R 1 
HETATM 49 H H45 J40 . . . M 8 114.037 142.203 125.58 1 155.81 ? H45 J40 508 R 1 
HETATM 50 H H46 J40 . . . M 8 112.323 142.634 125.041 1 155.81 ? H46 J40 508 R 1 
#
_model_server_stats.io_time_ms              26 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           50 
#