data_8JT8 # _model_server_result.job_id JBtJfud-X42qvfpfQ0TEQA _model_server_result.datetime_utc '2025-01-25 08:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1204}' # _entry.id 8JT8 # _exptl.entry_id 8JT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JT8 _cell.length_a 48.89 _cell.length_b 54.03 _cell.length_c 177.84 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 82 A CYS 148 1_555 A SG CYS 161 A CYS 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf2 A SG CYS 322 A CYS 349 1_555 A SG CYS 326 A CYS 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc2 A OE2 GLU 207 A GLU 1008 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? metalc ? metalc3 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.959 ? metalc ? metalc4 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc5 A OD1 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc6 A OD2 ASP 211 A ASP 1012 1_555 B MG MG . A MG 1201 2_356 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 107 n n C1 C10 CLR sing 108 n n C1 H11 CLR sing 109 n n C1 H12 CLR sing 110 n n C2 C3 CLR sing 111 n n C2 H21 CLR sing 112 n n C2 H22 CLR sing 113 n n C3 C4 CLR sing 114 n n C3 O1 CLR sing 115 n n C3 H3 CLR sing 116 n n C4 C5 CLR sing 117 n n C4 H41 CLR sing 118 n n C4 H42 CLR sing 119 n n C5 C6 CLR doub 120 n n C5 C10 CLR sing 121 n n C6 C7 CLR sing 122 n n C6 H6 CLR sing 123 n n C7 C8 CLR sing 124 n n C7 H71 CLR sing 125 n n C7 H72 CLR sing 126 n n C8 C9 CLR sing 127 n n C8 C14 CLR sing 128 n n C8 H8 CLR sing 129 n n C9 C10 CLR sing 130 n n C9 C11 CLR sing 131 n n C9 H9 CLR sing 132 n n C10 C19 CLR sing 133 n n C11 C12 CLR sing 134 n n C11 H111 CLR sing 135 n n C11 H112 CLR sing 136 n n C12 C13 CLR sing 137 n n C12 H121 CLR sing 138 n n C12 H122 CLR sing 139 n n C13 C14 CLR sing 140 n n C13 C17 CLR sing 141 n n C13 C18 CLR sing 142 n n C14 C15 CLR sing 143 n n C14 H14 CLR sing 144 n n C15 C16 CLR sing 145 n n C15 H151 CLR sing 146 n n C15 H152 CLR sing 147 n n C16 C17 CLR sing 148 n n C16 H161 CLR sing 149 n n C16 H162 CLR sing 150 n n C17 C20 CLR sing 151 n n C17 H17 CLR sing 152 n n C18 H181 CLR sing 153 n n C18 H182 CLR sing 154 n n C18 H183 CLR sing 155 n n C19 H191 CLR sing 156 n n C19 H192 CLR sing 157 n n C19 H193 CLR sing 158 n n C20 C21 CLR sing 159 n n C20 C22 CLR sing 160 n n C20 H20 CLR sing 161 n n C21 H211 CLR sing 162 n n C21 H212 CLR sing 163 n n C21 H213 CLR sing 164 n n C22 C23 CLR sing 165 n n C22 H221 CLR sing 166 n n C22 H222 CLR sing 167 n n C23 C24 CLR sing 168 n n C23 H231 CLR sing 169 n n C23 H232 CLR sing 170 n n C24 C25 CLR sing 171 n n C24 H241 CLR sing 172 n n C24 H242 CLR sing 173 n n C25 C26 CLR sing 174 n n C25 C27 CLR sing 175 n n C25 H25 CLR sing 176 n n C26 H261 CLR sing 177 n n C26 H262 CLR sing 178 n n C26 H263 CLR sing 179 n n C27 H271 CLR sing 180 n n C27 H272 CLR sing 181 n n C27 H273 CLR sing 182 n n O1 H1 CLR sing 183 n n # _atom_sites.entry_id 8JT8 _atom_sites.fract_transf_matrix[1][1] 0.020454 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018508 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005623 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 1201 901 MG MG . C 3 EZX A 1 1202 1201 EZX LIG . D 4 OLC A 1 1203 1202 OLC OLC . E 5 CLR A 1 1204 1401 CLR CLR . F 5 CLR A 1 1205 1701 CLR CLR . G 4 OLC A 1 1206 2101 OLC OLC . H 4 OLC A 1 1207 2201 OLC OLC . I 4 OLC A 1 1208 2203 OLC OLC . J 4 OLC A 1 1209 2204 OLC OLC . K 6 1PE A 1 1210 2205 1PE 1PE . L 7 PEG A 1 1211 2206 PEG PEG . M 7 PEG A 1 1212 2207 PEG PEG . N 4 OLC A 1 1213 2203 OLC OLC . O 4 OLC A 1 1214 2204 OLC OLC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . E 5 -40.364 -22.986 147.127 1 133.98 ? C1 CLR 1204 A 1 HETATM 2 C C2 CLR . . . E 5 -40.831 -23.144 148.58 1 126.74 ? C2 CLR 1204 A 1 HETATM 3 C C3 CLR . . . E 5 -41.175 -21.819 149.218 1 106.54 ? C3 CLR 1204 A 1 HETATM 4 C C4 CLR . . . E 5 -42.234 -21.137 148.38 1 115.91 ? C4 CLR 1204 A 1 HETATM 5 C C5 CLR . . . E 5 -41.804 -20.981 146.936 1 122.5 ? C5 CLR 1204 A 1 HETATM 6 C C6 CLR . . . E 5 -41.797 -19.783 146.37 1 117.82 ? C6 CLR 1204 A 1 HETATM 7 C C7 CLR . . . E 5 -41.5 -19.51 144.932 1 113.54 ? C7 CLR 1204 A 1 HETATM 8 C C8 CLR . . . E 5 -41.398 -20.783 144.094 1 114.31 ? C8 CLR 1204 A 1 HETATM 9 C C9 CLR . . . E 5 -40.653 -21.876 144.878 1 112.16 ? C9 CLR 1204 A 1 HETATM 10 C C10 CLR . . . E 5 -41.372 -22.253 146.208 1 129.67 ? C10 CLR 1204 A 1 HETATM 11 C C11 CLR . . . E 5 -40.326 -23.09 143.993 1 106.17 ? C11 CLR 1204 A 1 HETATM 12 C C12 CLR . . . E 5 -39.67 -22.734 142.654 1 99.55 ? C12 CLR 1204 A 1 HETATM 13 C C13 CLR . . . E 5 -40.49 -21.717 141.857 1 97.05 ? C13 CLR 1204 A 1 HETATM 14 C C14 CLR . . . E 5 -40.661 -20.508 142.792 1 108.58 ? C14 CLR 1204 A 1 HETATM 15 C C15 CLR . . . E 5 -41.192 -19.421 141.867 1 108.82 ? C15 CLR 1204 A 1 HETATM 16 C C16 CLR . . . E 5 -40.349 -19.609 140.601 1 101.45 ? C16 CLR 1204 A 1 HETATM 17 C C17 CLR . . . E 5 -39.782 -21.054 140.636 1 92.81 ? C17 CLR 1204 A 1 HETATM 18 C C18 CLR . . . E 5 -41.839 -22.309 141.414 1 100.98 ? C18 CLR 1204 A 1 HETATM 19 C C19 CLR . . . E 5 -42.62 -23.14 145.982 1 141.24 ? C19 CLR 1204 A 1 HETATM 20 C C20 CLR . . . E 5 -39.867 -21.702 139.24 1 85.62 ? C20 CLR 1204 A 1 HETATM 21 C C21 CLR . . . E 5 -38.801 -22.763 138.986 1 84.38 ? C21 CLR 1204 A 1 HETATM 22 C C22 CLR . . . E 5 -39.803 -20.619 138.151 1 80.6 ? C22 CLR 1204 A 1 HETATM 23 C C23 CLR . . . E 5 -39.84 -21.115 136.737 1 72.14 ? C23 CLR 1204 A 1 HETATM 24 O O1 CLR . . . E 5 -41.634 -22.026 150.563 1 79.05 ? O1 CLR 1204 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 24 #