data_8JU4
#
_model_server_result.job_id            e4DqyWCPr0X2CSHYGrR35w 
_model_server_result.datetime_utc      '2024-11-24 03:07:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ju4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8JU4 
#
_exptl.entry_id    8JU4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8JU4 
_cell.length_a            118.89 
_cell.length_b            118.89 
_cell.length_c            118.61 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JU4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        151 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 1 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 131 n n 
PA O2A FAD sing 132 n n 
PA O5B FAD sing 133 n n 
PA O3P FAD sing 134 n n 
O2A HOA2 FAD sing 135 n n 
O5B C5B FAD sing 136 n n 
C5B C4B FAD sing 137 n n 
C5B H51A FAD sing 138 n n 
C5B H52A FAD sing 139 n n 
C4B O4B FAD sing 140 n n 
C4B C3B FAD sing 141 n n 
C4B H4B FAD sing 142 n n 
O4B C1B FAD sing 143 n n 
C3B O3B FAD sing 144 n n 
C3B C2B FAD sing 145 n n 
C3B H3B FAD sing 146 n n 
O3B HO3A FAD sing 147 n n 
C2B O2B FAD sing 148 n n 
C2B C1B FAD sing 149 n n 
C2B H2B FAD sing 150 n n 
O2B HO2A FAD sing 151 n n 
C1B N9A FAD sing 152 n n 
C1B H1B FAD sing 153 n n 
N9A C8A FAD sing 154 n y 
N9A C4A FAD sing 155 n y 
C8A N7A FAD doub 156 n y 
C8A H8A FAD sing 157 n n 
N7A C5A FAD sing 158 n y 
C5A C6A FAD sing 159 n y 
C5A C4A FAD doub 160 n y 
C6A N6A FAD sing 161 n n 
C6A N1A FAD doub 162 n y 
N6A H61A FAD sing 163 n n 
N6A H62A FAD sing 164 n n 
N1A C2A FAD sing 165 n y 
C2A N3A FAD doub 166 n y 
C2A H2A FAD sing 167 n n 
N3A C4A FAD sing 168 n y 
N1 C2 FAD sing 169 n n 
N1 C10 FAD doub 170 n n 
C2 O2 FAD doub 171 n n 
C2 N3 FAD sing 172 n n 
N3 C4 FAD sing 173 n n 
N3 HN3 FAD sing 174 n n 
C4 O4 FAD doub 175 n n 
C4 C4X FAD sing 176 n n 
C4X N5 FAD doub 177 n n 
C4X C10 FAD sing 178 n n 
N5 C5X FAD sing 179 n n 
C5X C6 FAD doub 180 n y 
C5X C9A FAD sing 181 n y 
C6 C7 FAD sing 182 n y 
C6 H6 FAD sing 183 n n 
C7 C7M FAD sing 184 n n 
C7 C8 FAD doub 185 n y 
C7M HM71 FAD sing 186 n n 
C7M HM72 FAD sing 187 n n 
C7M HM73 FAD sing 188 n n 
C8 C8M FAD sing 189 n n 
C8 C9 FAD sing 190 n y 
C8M HM81 FAD sing 191 n n 
C8M HM82 FAD sing 192 n n 
C8M HM83 FAD sing 193 n n 
C9 C9A FAD doub 194 n y 
C9 H9 FAD sing 195 n n 
C9A N10 FAD sing 196 n n 
N10 C10 FAD sing 197 n n 
N10 C1' FAD sing 198 n n 
C1' C2' FAD sing 199 n n 
C1' "H1'1" FAD sing 200 n n 
C1' "H1'2" FAD sing 201 n n 
C2' O2' FAD sing 202 n n 
C2' C3' FAD sing 203 n n 
C2' H2' FAD sing 204 n n 
O2' HO2' FAD sing 205 n n 
C3' O3' FAD sing 206 n n 
C3' C4' FAD sing 207 n n 
C3' H3' FAD sing 208 n n 
O3' HO3' FAD sing 209 n n 
C4' O4' FAD sing 210 n n 
C4' C5' FAD sing 211 n n 
C4' H4' FAD sing 212 n n 
O4' HO4' FAD sing 213 n n 
C5' O5' FAD sing 214 n n 
C5' "H5'1" FAD sing 215 n n 
C5' "H5'2" FAD sing 216 n n 
O5' P FAD sing 217 n n 
P O1P FAD doub 218 n n 
P O2P FAD sing 219 n n 
P O3P FAD sing 220 n n 
O2P HOP2 FAD sing 221 n n 
#
_atom_sites.entry_id                     8JU4 
_atom_sites.fract_transf_matrix[1][1]    0.008411 
_atom_sites.fract_transf_matrix[1][2]    0.004856 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009712 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008431 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 601 601 FAD FAD . 
C 3 ANB A 1 602 701 ANB ANB . 
D 4 HOH A 1 701 4 HOH HOH . 
D 4 HOH A 2 702 1 HOH HOH . 
D 4 HOH A 3 703 3 HOH HOH . 
D 4 HOH A 4 704 2 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . B 2 40.064 -1.155 12.311 1 47.52 ? PA FAD 601 A 1 
HETATM 2 O O1A FAD . . . B 2 40.749 -2.455 12.544 1 46.81 ? O1A FAD 601 A 1 
HETATM 3 O O2A FAD . . . B 2 40.63 0.074 12.979 1 46.17 ? O2A FAD 601 A 1 
HETATM 4 O O5B FAD . . . B 2 39.919 -0.927 10.742 1 46.53 ? O5B FAD 601 A 1 
HETATM 5 C C5B FAD . . . B 2 39.371 0.321 10.232 1 52.23 ? C5B FAD 601 A 1 
HETATM 6 C C4B FAD . . . B 2 40.145 0.785 9.018 1 46.74 ? C4B FAD 601 A 1 
HETATM 7 O O4B FAD . . . B 2 39.273 1.599 8.185 1 45.33 ? O4B FAD 601 A 1 
HETATM 8 C C3B FAD . . . B 2 41.362 1.65 9.349 1 45.77 ? C3B FAD 601 A 1 
HETATM 9 O O3B FAD . . . B 2 42.549 1.271 8.674 1 51.34 ? O3B FAD 601 A 1 
HETATM 10 C C2B FAD . . . B 2 40.916 3.053 8.92 1 48.92 ? C2B FAD 601 A 1 
HETATM 11 O O2B FAD . . . B 2 42.006 3.855 8.544 1 47.04 ? O2B FAD 601 A 1 
HETATM 12 C C1B FAD . . . B 2 40.003 2.725 7.749 1 49.52 ? C1B FAD 601 A 1 
HETATM 13 N N9A FAD . . . B 2 39.099 3.799 7.398 1 47.29 ? N9A FAD 601 A 1 
HETATM 14 C C8A FAD . . . B 2 38.461 4.674 8.273 1 49.55 ? C8A FAD 601 A 1 
HETATM 15 N N7A FAD . . . B 2 37.707 5.543 7.648 1 47.57 ? N7A FAD 601 A 1 
HETATM 16 C C5A FAD . . . B 2 37.841 5.214 6.305 1 49.71 ? C5A FAD 601 A 1 
HETATM 17 C C6A FAD . . . B 2 37.29 5.788 5.152 1 57.31 ? C6A FAD 601 A 1 
HETATM 18 N N6A FAD . . . B 2 36.5 6.861 5.19 1 47.11 ? N6A FAD 601 A 1 
HETATM 19 N N1A FAD . . . B 2 37.62 5.22 3.966 1 52.52 ? N1A FAD 601 A 1 
HETATM 20 C C2A FAD . . . B 2 38.45 4.165 3.956 1 59.95 ? C2A FAD 601 A 1 
HETATM 21 N N3A FAD . . . B 2 39.053 3.562 4.973 1 52.66 ? N3A FAD 601 A 1 
HETATM 22 C C4A FAD . . . B 2 38.688 4.138 6.133 1 50 ? C4A FAD 601 A 1 
HETATM 23 N N1 FAD . . . B 2 40.388 -7.244 19.657 1 46.99 ? N1 FAD 601 A 1 
HETATM 24 C C2 FAD . . . B 2 40.352 -8.573 19.477 1 44.51 ? C2 FAD 601 A 1 
HETATM 25 O O2 FAD . . . B 2 39.32 -9.126 19.081 1 47.58 ? O2 FAD 601 A 1 
HETATM 26 N N3 FAD . . . B 2 41.408 -9.371 19.758 1 47.53 ? N3 FAD 601 A 1 
HETATM 27 C C4 FAD . . . B 2 42.551 -8.9 20.345 1 49.44 ? C4 FAD 601 A 1 
HETATM 28 O O4 FAD . . . B 2 43.484 -9.693 20.529 1 49.51 ? O4 FAD 601 A 1 
HETATM 29 C C4X FAD . . . B 2 42.661 -7.475 20.487 1 44.62 ? C4X FAD 601 A 1 
HETATM 30 N N5 FAD . . . B 2 43.754 -6.955 20.989 1 47.3 ? N5 FAD 601 A 1 
HETATM 31 C C5X FAD . . . B 2 43.857 -5.591 21.008 1 46.77 ? C5X FAD 601 A 1 
HETATM 32 C C6 FAD . . . B 2 45.073 -5.033 21.431 1 46.59 ? C6 FAD 601 A 1 
HETATM 33 C C7 FAD . . . B 2 45.313 -3.68 21.354 1 46.53 ? C7 FAD 601 A 1 
HETATM 34 C C7M FAD . . . B 2 46.647 -3.141 21.808 1 50.83 ? C7M FAD 601 A 1 
HETATM 35 C C8 FAD . . . B 2 44.294 -2.83 20.868 1 44.05 ? C8 FAD 601 A 1 
HETATM 36 C C8M FAD . . . B 2 44.481 -1.337 20.845 1 46.02 ? C8M FAD 601 A 1 
HETATM 37 C C9 FAD . . . B 2 43.041 -3.356 20.58 1 46.69 ? C9 FAD 601 A 1 
HETATM 38 C C9A FAD . . . B 2 42.817 -4.74 20.578 1 46.04 ? C9A FAD 601 A 1 
HETATM 39 N N10 FAD . . . B 2 41.609 -5.321 20.201 1 46.76 ? N10 FAD 601 A 1 
HETATM 40 C C10 FAD . . . B 2 41.501 -6.705 20.109 1 47.28 ? C10 FAD 601 A 1 
HETATM 41 C C1' FAD . . . B 2 40.491 -4.48 19.721 1 51.21 ? C1' FAD 601 A 1 
HETATM 42 C C2' FAD . . . B 2 40.405 -4.459 18.225 1 55.4 ? C2' FAD 601 A 1 
HETATM 43 O O2' FAD . . . B 2 41.721 -4.165 17.686 1 52 ? O2' FAD 601 A 1 
HETATM 44 C C3' FAD . . . B 2 39.425 -3.441 17.625 1 56.96 ? C3' FAD 601 A 1 
HETATM 45 O O3' FAD . . . B 2 38.273 -3.14 18.371 1 48.52 ? O3' FAD 601 A 1 
HETATM 46 C C4' FAD . . . B 2 38.98 -4.005 16.286 1 60.29 ? C4' FAD 601 A 1 
HETATM 47 O O4' FAD . . . B 2 40.146 -4.434 15.578 1 68.28 ? O4' FAD 601 A 1 
HETATM 48 C C5' FAD . . . B 2 38.249 -2.979 15.467 1 56.08 ? C5' FAD 601 A 1 
HETATM 49 O O5' FAD . . . B 2 38.327 -3.366 14.087 1 42.37 ? O5' FAD 601 A 1 
HETATM 50 P P FAD . . . B 2 37.528 -2.497 13.004 1 47.66 ? P FAD 601 A 1 
HETATM 51 O O1P FAD . . . B 2 37.484 -3.33 11.795 1 46.03 ? O1P FAD 601 A 1 
HETATM 52 O O2P FAD . . . B 2 36.255 -1.997 13.63 1 50.88 ? O2P FAD 601 A 1 
HETATM 53 O O3P FAD . . . B 2 38.544 -1.276 12.783 1 43.08 ? O3P FAD 601 A 1 
HETATM 54 H H51A FAD . . . B 2 39.419 1.019 10.931 1 52.23 ? H51A FAD 601 A 1 
HETATM 55 H H52A FAD . . . B 2 38.423 0.193 9.98 1 52.23 ? H52A FAD 601 A 1 
HETATM 56 H H4B FAD . . . B 2 40.425 -0.007 8.511 1 46.74 ? H4B FAD 601 A 1 
HETATM 57 H H3B FAD . . . B 2 41.546 1.63 10.323 1 45.77 ? H3B FAD 601 A 1 
HETATM 58 H HO3A FAD . . . B 2 43.175 1.794 8.908 0 51.34 ? HO3A FAD 601 A 1 
HETATM 59 H H2B FAD . . . B 2 40.406 3.496 9.649 1 48.92 ? H2B FAD 601 A 1 
HETATM 60 H HO2A FAD . . . B 2 41.721 4.621 8.314 0 47.04 ? HO2A FAD 601 A 1 
HETATM 61 H H1B FAD . . . B 2 40.554 2.496 6.967 1 49.52 ? H1B FAD 601 A 1 
HETATM 62 H H8A FAD . . . B 2 38.554 4.652 9.21 1 49.55 ? H8A FAD 601 A 1 
HETATM 63 H H61A FAD . . . B 2 36.192 7.201 4.442 0 47.11 ? H61A FAD 601 A 1 
HETATM 64 H H62A FAD . . . B 2 36.292 7.221 5.962 0 47.11 ? H62A FAD 601 A 1 
HETATM 65 H H2A FAD . . . B 2 38.654 3.818 3.101 1 59.95 ? H2A FAD 601 A 1 
HETATM 66 H HN3 FAD . . . B 2 41.375 -10.228 19.562 1 47.53 ? HN3 FAD 601 A 1 
HETATM 67 H H6 FAD . . . B 2 45.748 -5.61 21.78 1 46.59 ? H6 FAD 601 A 1 
HETATM 68 H HM71 FAD . . . B 2 46.659 -2.175 21.706 1 50.83 ? HM71 FAD 601 A 1 
HETATM 69 H HM72 FAD . . . B 2 47.354 -3.531 21.27 1 50.83 ? HM72 FAD 601 A 1 
HETATM 70 H HM73 FAD . . . B 2 46.788 -3.368 22.74 1 50.83 ? HM73 FAD 601 A 1 
HETATM 71 H HM81 FAD . . . B 2 43.641 -0.908 20.615 1 46.02 ? HM81 FAD 601 A 1 
HETATM 72 H HM82 FAD . . . B 2 45.153 -1.104 20.185 1 46.02 ? HM82 FAD 601 A 1 
HETATM 73 H HM83 FAD . . . B 2 44.769 -1.033 21.72 1 46.02 ? HM83 FAD 601 A 1 
HETATM 74 H H9 FAD . . . B 2 42.341 -2.763 20.312 1 46.69 ? H9 FAD 601 A 1 
HETATM 75 H "H1'1" FAD . . . B 2 40.62 -3.56 20.034 1 51.21 ? "H1'1" FAD 601 A 1 
HETATM 76 H "H1'2" FAD . . . B 2 39.647 -4.832 20.072 1 51.21 ? "H1'2" FAD 601 A 1 
HETATM 77 H H2' FAD . . . B 2 40.121 -5.369 17.949 1 55.4 ? H2' FAD 601 A 1 
HETATM 78 H HO2' FAD . . . B 2 41.666 -3.501 17.161 0 52 ? HO2' FAD 601 A 1 
HETATM 79 H H3' FAD . . . B 2 39.855 -2.561 17.466 1 56.96 ? H3' FAD 601 A 1 
HETATM 80 H HO3' FAD . . . B 2 37.591 -3.34 17.908 0 48.52 ? HO3' FAD 601 A 1 
HETATM 81 H H4' FAD . . . B 2 38.368 -4.785 16.443 1 60.29 ? H4' FAD 601 A 1 
HETATM 82 H HO4' FAD . . . B 2 40.215 -4.037 14.832 0 68.28 ? HO4' FAD 601 A 1 
HETATM 83 H "H5'1" FAD . . . B 2 38.667 -2.102 15.595 1 56.08 ? "H5'1" FAD 601 A 1 
HETATM 84 H "H5'2" FAD . . . B 2 37.313 -2.941 15.754 1 56.08 ? "H5'2" FAD 601 A 1 
#
_model_server_stats.io_time_ms              125 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           467 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           84 
#