data_8JU6
#
_model_server_result.job_id            LrTYa-UpaXJRsVOOCz8kwQ 
_model_server_result.datetime_utc      '2024-11-14 06:30:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ju6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1201}' 
#
_entry.id    8JU6 
#
_exptl.entry_id    8JU6 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              460.528 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JU6 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JU6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C25 H28 N6 O3' 
_chem_comp.formula_weight    460.528 
_chem_comp.id                XPW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-({(5S,7S)-3-[5-(2-hydroxypropan-2-yl)pyrazin-2-yl]-7-methyl-2-oxo-1-oxa-3-azaspiro[4.5]decan-7-yl}methyl)-1H-benzimidazole-6-carbonitrile 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GSK2798745 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C25 C24 XPW doub 374 n y 
C25 C26 XPW sing 375 n y 
C24 C23 XPW sing 376 n y 
N30 C29 XPW trip 377 n n 
C29 C26 XPW sing 378 n n 
C26 C27 XPW doub 379 n y 
C23 N22 XPW sing 380 n y 
C23 C28 XPW doub 381 n y 
N22 C21 XPW doub 382 n y 
C27 C28 XPW sing 383 n y 
C28 N20 XPW sing 384 n y 
C21 N20 XPW sing 385 n y 
N20 C19 XPW sing 386 n n 
C19 C17 XPW sing 387 n n 
C17 C16 XPW sing 388 n n 
C17 C18 XPW sing 389 n n 
C17 C31 XPW sing 390 n n 
C16 C15 XPW sing 391 n n 
C31 C13 XPW sing 392 n n 
C15 C14 XPW sing 393 n n 
C13 C14 XPW sing 394 n n 
C13 C12 XPW sing 395 n n 
C13 O32 XPW sing 396 n n 
C12 N11 XPW sing 397 n n 
O32 C33 XPW sing 398 n n 
N07 C06 XPW doub 399 n y 
N07 C08 XPW sing 400 n y 
N11 C33 XPW sing 401 n n 
N11 C08 XPW sing 402 n n 
C06 C05 XPW sing 403 n y 
C33 O34 XPW doub 404 n n 
C08 C09 XPW doub 405 n y 
O04 C02 XPW sing 406 n n 
C05 C02 XPW sing 407 n n 
C05 N10 XPW doub 408 n y 
C09 N10 XPW sing 409 n y 
C02 C01 XPW sing 410 n n 
C02 C03 XPW sing 411 n n 
C12 H1 XPW sing 412 n n 
C12 H2 XPW sing 413 n n 
C14 H3 XPW sing 414 n n 
C14 H4 XPW sing 415 n n 
C15 H5 XPW sing 416 n n 
C15 H6 XPW sing 417 n n 
C16 H7 XPW sing 418 n n 
C16 H8 XPW sing 419 n n 
C18 H9 XPW sing 420 n n 
C18 H10 XPW sing 421 n n 
C18 H11 XPW sing 422 n n 
C19 H12 XPW sing 423 n n 
C19 H13 XPW sing 424 n n 
C01 H14 XPW sing 425 n n 
C01 H15 XPW sing 426 n n 
C01 H16 XPW sing 427 n n 
C03 H17 XPW sing 428 n n 
C03 H18 XPW sing 429 n n 
C03 H19 XPW sing 430 n n 
O04 H20 XPW sing 431 n n 
C06 H21 XPW sing 432 n n 
C09 H22 XPW sing 433 n n 
C21 H23 XPW sing 434 n n 
C24 H24 XPW sing 435 n n 
C25 H25 XPW sing 436 n n 
C27 H26 XPW sing 437 n n 
C31 H27 XPW sing 438 n n 
C31 H28 XPW sing 439 n n 
#
_atom_sites.entry_id                     8JU6 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 XPW A 1 1201 801 XPW V43 . 
F 2 XPW B 1 1201 801 XPW V43 . 
G 2 XPW D 1 1201 801 XPW V43 . 
H 2 XPW C 1 1201 801 XPW V43 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 XPW . . . F 2 98.419 137.854 122.498 1 69.19 ? C12 XPW 1201 B 1 
HETATM 2 C C13 XPW . . . F 2 98.63 139.212 123.053 1 69.19 ? C13 XPW 1201 B 1 
HETATM 3 C C14 XPW . . . F 2 100.144 139.392 122.981 1 69.19 ? C14 XPW 1201 B 1 
HETATM 4 C C15 XPW . . . F 2 100.618 140.573 123.824 1 69.19 ? C15 XPW 1201 B 1 
HETATM 5 C C16 XPW . . . F 2 100.173 140.412 125.272 1 69.19 ? C16 XPW 1201 B 1 
HETATM 6 C C17 XPW . . . F 2 98.652 140.332 125.385 1 69.19 ? C17 XPW 1201 B 1 
HETATM 7 C C18 XPW . . . F 2 98.071 141.702 125.002 1 69.19 ? C18 XPW 1201 B 1 
HETATM 8 C C19 XPW . . . F 2 98.308 139.986 126.841 1 69.19 ? C19 XPW 1201 B 1 
HETATM 9 C C23 XPW . . . F 2 95.097 138.356 127.236 1 69.19 ? C23 XPW 1201 B 1 
HETATM 10 C C01 XPW . . . F 2 92.522 134.543 118.882 1 69.19 ? C01 XPW 1201 B 1 
HETATM 11 C C02 XPW . . . F 2 93.782 133.871 119.422 1 69.19 ? C02 XPW 1201 B 1 
HETATM 12 C C03 XPW . . . F 2 94.468 133.115 118.289 1 69.19 ? C03 XPW 1201 B 1 
HETATM 13 O O04 XPW . . . F 2 93.44 132.985 120.449 1 69.19 ? O04 XPW 1201 B 1 
HETATM 14 C C05 XPW . . . F 2 94.73 134.935 119.959 1 69.19 ? C05 XPW 1201 B 1 
HETATM 15 C C06 XPW . . . F 2 94.278 135.894 121.06 1 69.19 ? C06 XPW 1201 B 1 
HETATM 16 N N07 XPW . . . F 2 95.194 136.904 121.557 1 69.19 ? N07 XPW 1201 B 1 
HETATM 17 C C08 XPW . . . F 2 96.533 137.001 121.008 1 69.19 ? C08 XPW 1201 B 1 
HETATM 18 C C09 XPW . . . F 2 96.982 136.042 119.912 1 69.19 ? C09 XPW 1201 B 1 
HETATM 19 N N10 XPW . . . F 2 96.067 135.037 119.411 1 69.19 ? N10 XPW 1201 B 1 
HETATM 20 N N11 XPW . . . F 2 97.454 138.007 121.493 1 69.19 ? N11 XPW 1201 B 1 
HETATM 21 N N20 XPW . . . F 2 96.917 139.575 127.017 1 69.19 ? N20 XPW 1201 B 1 
HETATM 22 C C21 XPW . . . F 2 95.852 140.401 127.219 1 69.19 ? C21 XPW 1201 B 1 
HETATM 23 N N22 XPW . . . F 2 94.734 139.635 127.347 1 69.19 ? N22 XPW 1201 B 1 
HETATM 24 C C24 XPW . . . F 2 94.271 137.012 127.296 1 69.19 ? C24 XPW 1201 B 1 
HETATM 25 C C25 XPW . . . F 2 94.969 135.689 127.134 1 69.19 ? C25 XPW 1201 B 1 
HETATM 26 C C26 XPW . . . F 2 96.433 135.656 126.917 1 69.19 ? C26 XPW 1201 B 1 
HETATM 27 C C27 XPW . . . F 2 97.208 136.941 126.864 1 69.19 ? C27 XPW 1201 B 1 
HETATM 28 C C28 XPW . . . F 2 96.46 138.319 127.042 1 69.19 ? C28 XPW 1201 B 1 
HETATM 29 C C29 XPW . . . F 2 97.159 134.328 126.751 1 69.19 ? C29 XPW 1201 B 1 
HETATM 30 N N30 XPW . . . F 2 97.701 133.343 126.628 1 69.19 ? N30 XPW 1201 B 1 
HETATM 31 C C31 XPW . . . F 2 98.054 139.272 124.459 1 69.19 ? C31 XPW 1201 B 1 
HETATM 32 O O32 XPW . . . F 2 98.254 140.138 122.052 1 69.19 ? O32 XPW 1201 B 1 
HETATM 33 C C33 XPW . . . F 2 97.553 139.389 121.028 1 69.19 ? C33 XPW 1201 B 1 
HETATM 34 O O34 XPW . . . F 2 97.141 139.814 120.003 1 69.19 ? O34 XPW 1201 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#