data_8JUD # _model_server_result.job_id z9cAdjoqcp9ARHwli875rQ _model_server_result.datetime_utc '2025-01-05 02:03:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8JUD # _exptl.entry_id 8JUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JUD _cell.length_a 77.35 _cell.length_b 77.35 _cell.length_c 62.37 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B S34 7SF 1 B 7SF 1 1_555 B N GGL 2 B GGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.606 ? covale ? covale2 B CD GGL 2 B GGL 2 1_555 B N GLY 3 B GLY 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.302 ? covale ? covale3 B C LEU 4 B LEU 4 1_555 B N TBG 5 B TBG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C TBG 5 B TBG 5 1_555 B N EOE 6 B EOE 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.361 ? covale ? covale5 B C EOE 6 B EOE 6 1_555 B N NH2 7 B NH2 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? metalc ? metalc1 A O ASP 61 A ASP 153 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc2 A NE2 HIS 71 A HIS 163 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A OD2 ASP 73 A ASP 165 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc4 A OD1 ASP 78 A ASP 170 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc5 A O GLY 79 A GLY 171 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 A O GLY 81 A GLY 173 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? metalc ? metalc7 A O THR 83 A THR 175 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc8 A NE2 HIS 86 A HIS 178 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc9 A O GLY 93 A GLY 185 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc10 A O GLY 95 A GLY 187 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc11 A OD1 ASP 97 A ASP 189 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc12 A ND1 HIS 99 A HIS 191 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc13 A OD2 ASP 101 A ASP 193 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 A OE2 GLU 104 A GLU 196 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc15 A NE2 HIS 122 A HIS 214 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc16 A NE2 HIS 126 A HIS 218 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc17 A NE2 HIS 132 A HIS 224 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc18 C CA CA . A CA 301 1_555 G O HOH . A HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc19 C CA CA . A CA 301 1_555 G O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc20 F ZN ZN . A ZN 304 1_555 B O GGL 2 B GGL 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.886 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JUD _atom_sites.fract_transf_matrix[1][1] 0.012928 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012928 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1262 CA CA . D 3 CA A 1 302 1263 CA CA . E 4 ZN A 1 303 1264 ZN ZN . F 4 ZN A 1 304 1265 ZN ZN . G 5 HOH A 1 401 1459 HOH HOH . G 5 HOH A 2 402 1375 HOH HOH . G 5 HOH A 3 403 1442 HOH HOH . G 5 HOH A 4 404 1462 HOH HOH . G 5 HOH A 5 405 1463 HOH HOH . G 5 HOH A 6 406 1387 HOH HOH . G 5 HOH A 7 407 1434 HOH HOH . G 5 HOH A 8 408 1458 HOH HOH . G 5 HOH A 9 409 1412 HOH HOH . G 5 HOH A 10 410 1389 HOH HOH . G 5 HOH A 11 411 1429 HOH HOH . G 5 HOH A 12 412 1394 HOH HOH . G 5 HOH A 13 413 1426 HOH HOH . G 5 HOH A 14 414 1388 HOH HOH . G 5 HOH A 15 415 1380 HOH HOH . G 5 HOH A 16 416 1410 HOH HOH . G 5 HOH A 17 417 1405 HOH HOH . G 5 HOH A 18 418 1372 HOH HOH . G 5 HOH A 19 419 1440 HOH HOH . G 5 HOH A 20 420 1367 HOH HOH . G 5 HOH A 21 421 1461 HOH HOH . G 5 HOH A 22 422 1411 HOH HOH . G 5 HOH A 23 423 1449 HOH HOH . G 5 HOH A 24 424 1377 HOH HOH . G 5 HOH A 25 425 1415 HOH HOH . G 5 HOH A 26 426 1369 HOH HOH . G 5 HOH A 27 427 1416 HOH HOH . G 5 HOH A 28 428 1436 HOH HOH . G 5 HOH A 29 429 1371 HOH HOH . G 5 HOH A 30 430 1455 HOH HOH . G 5 HOH A 31 431 1399 HOH HOH . G 5 HOH A 32 432 1390 HOH HOH . G 5 HOH A 33 433 1391 HOH HOH . G 5 HOH A 34 434 1383 HOH HOH . G 5 HOH A 35 435 1444 HOH HOH . G 5 HOH A 36 436 1373 HOH HOH . G 5 HOH A 37 437 1409 HOH HOH . G 5 HOH A 38 438 1447 HOH HOH . G 5 HOH A 39 439 1396 HOH HOH . G 5 HOH A 40 440 1400 HOH HOH . G 5 HOH A 41 441 1384 HOH HOH . G 5 HOH A 42 442 1422 HOH HOH . G 5 HOH A 43 443 1402 HOH HOH . G 5 HOH A 44 444 1460 HOH HOH . G 5 HOH A 45 445 1424 HOH HOH . G 5 HOH A 46 446 1393 HOH HOH . G 5 HOH A 47 447 1378 HOH HOH . G 5 HOH A 48 448 1392 HOH HOH . G 5 HOH A 49 449 1425 HOH HOH . G 5 HOH A 50 450 1433 HOH HOH . G 5 HOH A 51 451 1437 HOH HOH . G 5 HOH A 52 452 1439 HOH HOH . G 5 HOH A 53 453 1370 HOH HOH . G 5 HOH A 54 454 1443 HOH HOH . G 5 HOH A 55 455 1407 HOH HOH . G 5 HOH A 56 456 1397 HOH HOH . G 5 HOH A 57 457 1420 HOH HOH . G 5 HOH A 58 458 1456 HOH HOH . G 5 HOH A 59 459 1368 HOH HOH . G 5 HOH A 60 460 1445 HOH HOH . G 5 HOH A 61 461 1450 HOH HOH . G 5 HOH A 62 462 1401 HOH HOH . G 5 HOH A 63 463 1395 HOH HOH . G 5 HOH A 64 464 1404 HOH HOH . G 5 HOH A 65 465 1414 HOH HOH . G 5 HOH A 66 466 1382 HOH HOH . G 5 HOH A 67 467 1431 HOH HOH . G 5 HOH A 68 468 1398 HOH HOH . G 5 HOH A 69 469 1408 HOH HOH . G 5 HOH A 70 470 1441 HOH HOH . G 5 HOH A 71 471 1386 HOH HOH . G 5 HOH A 72 472 1430 HOH HOH . G 5 HOH A 73 473 1435 HOH HOH . G 5 HOH A 74 474 1438 HOH HOH . G 5 HOH A 75 475 1376 HOH HOH . G 5 HOH A 76 476 1419 HOH HOH . G 5 HOH A 77 477 1413 HOH HOH . G 5 HOH A 78 478 1432 HOH HOH . G 5 HOH A 79 479 1379 HOH HOH . G 5 HOH A 80 480 1374 HOH HOH . G 5 HOH A 81 481 1457 HOH HOH . G 5 HOH A 82 482 1381 HOH HOH . G 5 HOH A 83 483 1403 HOH HOH . G 5 HOH A 84 484 1451 HOH HOH . G 5 HOH A 85 485 1428 HOH HOH . G 5 HOH A 86 486 1418 HOH HOH . G 5 HOH A 87 487 1454 HOH HOH . G 5 HOH A 88 488 1448 HOH HOH . G 5 HOH A 89 489 1421 HOH HOH . G 5 HOH A 90 490 1446 HOH HOH . G 5 HOH A 91 491 1423 HOH HOH . G 5 HOH A 92 492 1453 HOH HOH . G 5 HOH A 93 493 1427 HOH HOH . G 5 HOH A 94 494 1417 HOH HOH . G 5 HOH A 95 495 1406 HOH HOH . G 5 HOH A 96 496 1452 HOH HOH . H 5 HOH B 1 101 1385 HOH HOH . H 5 HOH B 2 102 1366 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -40.986 _atom_site.Cartn_y -10.312 _atom_site.Cartn_z 0.68 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.71 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #