data_8JUG # _model_server_result.job_id jJ_NQpJBuTM-ZEOgMqL2Tw _model_server_result.datetime_utc '2024-11-23 00:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jug # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8JUG # _exptl.entry_id 8JUG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JUG _cell.length_a 76.06 _cell.length_b 76.06 _cell.length_c 61.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JUG _symmetry.cell_setting ? _symmetry.Int_Tables_number 79 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B S34 7SF 1 C 7SF 1 1_555 B N GGL 2 C GGL 2 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.626 ? covale ? covale2 B S34 7SF 1 C 7SF 1 1_555 B N GGL 2 C GGL 2 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.63 ? covale ? covale3 B CD GGL 2 C GGL 2 1_555 B N GLY 3 C GLY 3 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.324 ? covale ? covale4 B CD GGL 2 C GGL 2 1_555 B N GLY 3 C GLY 3 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale5 B C GLY 3 C GLY 3 1_555 B N V1C 4 C V1C 4 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.344 ? covale ? covale6 B C GLY 3 C GLY 3 1_555 B N V1C 4 C V1C 4 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.34 ? covale ? covale7 B C V1C 4 C V1C 4 1_555 B N TBG 5 C TBG 5 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.319 ? covale ? covale8 B C V1C 4 C V1C 4 1_555 B N TBG 5 C TBG 5 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.334 ? covale ? covale9 B C TBG 5 C TBG 5 1_555 B N EOE 6 C EOE 6 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.318 ? covale ? covale10 B C TBG 5 C TBG 5 1_555 B N EOE 6 C EOE 6 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.323 ? covale ? covale11 B C EOE 6 C EOE 6 1_555 B N NH2 7 C NH2 7 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.321 ? covale ? covale12 B C EOE 6 C EOE 6 1_555 B N NH2 7 C NH2 7 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.323 ? metalc ? metalc1 A O ASP 61 A ASP 153 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 A NE2 HIS 71 A HIS 163 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 A OD2 ASP 73 A ASP 165 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc4 A OD1 ASP 78 A ASP 170 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc5 A O GLY 79 A GLY 171 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 A O GLY 81 A GLY 173 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 A O THR 83 A THR 175 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc8 A NE2 HIS 86 A HIS 178 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.98 ? metalc ? metalc9 A O GLY 93 A GLY 185 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc10 A O GLY 95 A GLY 187 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc11 A OD1 ASP 97 A ASP 189 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc12 A ND1 HIS 99 A HIS 191 1_555 E ZN ZN . A ZN 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc13 A OD2 ASP 101 A ASP 193 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc14 A OE2 GLU 104 A GLU 196 1_555 D CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc15 A NE2 HIS 122 A HIS 214 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc16 A NE2 HIS 126 A HIS 218 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc17 A NE2 HIS 132 A HIS 224 1_555 F ZN ZN . A ZN 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc18 C CA CA . A CA 301 1_555 G O HOH . A HOH 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc19 C CA CA . A CA 301 1_555 G O HOH . A HOH 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc20 F ZN ZN . A ZN 304 1_555 B O GGL 2 C GGL 2 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.943 ? metalc ? metalc21 F ZN ZN . A ZN 304 1_555 B O GGL 2 C GGL 2 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.993 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8JUG _atom_sites.fract_transf_matrix[1][1] 0.013148 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016158 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 1261 CA CA . D 3 CA A 1 302 1262 CA CA . E 4 ZN A 1 303 1263 ZN ZN . F 4 ZN A 1 304 1264 ZN ZN . G 5 HOH A 1 401 19 HOH HOH . G 5 HOH A 2 402 1373 HOH HOH . G 5 HOH A 3 403 1403 HOH HOH . G 5 HOH A 4 404 1459 HOH HOH . G 5 HOH A 5 405 1443 HOH HOH . G 5 HOH A 6 406 1372 HOH HOH . G 5 HOH A 7 407 1438 HOH HOH . G 5 HOH A 8 408 1450 HOH HOH . G 5 HOH A 9 409 11 HOH HOH . G 5 HOH A 10 410 1392 HOH HOH . G 5 HOH A 11 411 1447 HOH HOH . G 5 HOH A 12 412 1387 HOH HOH . G 5 HOH A 13 413 1375 HOH HOH . G 5 HOH A 14 414 1377 HOH HOH . G 5 HOH A 15 415 1383 HOH HOH . G 5 HOH A 16 416 1414 HOH HOH . G 5 HOH A 17 417 1433 HOH HOH . G 5 HOH A 18 418 1370 HOH HOH . G 5 HOH A 19 419 16 HOH HOH . G 5 HOH A 20 420 1432 HOH HOH . G 5 HOH A 21 421 1395 HOH HOH . G 5 HOH A 22 422 1404 HOH HOH . G 5 HOH A 23 423 1437 HOH HOH . G 5 HOH A 24 424 1381 HOH HOH . G 5 HOH A 25 425 1423 HOH HOH . G 5 HOH A 26 426 1434 HOH HOH . G 5 HOH A 27 427 1444 HOH HOH . G 5 HOH A 28 428 1384 HOH HOH . G 5 HOH A 29 429 1436 HOH HOH . G 5 HOH A 30 430 1430 HOH HOH . G 5 HOH A 31 431 1369 HOH HOH . G 5 HOH A 32 432 1445 HOH HOH . G 5 HOH A 33 433 1461 HOH HOH . G 5 HOH A 34 434 1415 HOH HOH . G 5 HOH A 35 435 1453 HOH HOH . G 5 HOH A 36 436 1424 HOH HOH . G 5 HOH A 37 437 1371 HOH HOH . G 5 HOH A 38 438 1435 HOH HOH . G 5 HOH A 39 439 1366 HOH HOH . G 5 HOH A 40 440 1411 HOH HOH . G 5 HOH A 41 441 1428 HOH HOH . G 5 HOH A 42 442 1462 HOH HOH . G 5 HOH A 43 443 1368 HOH HOH . G 5 HOH A 44 444 1401 HOH HOH . G 5 HOH A 45 445 1390 HOH HOH . G 5 HOH A 46 446 1367 HOH HOH . G 5 HOH A 47 447 1385 HOH HOH . G 5 HOH A 48 448 1417 HOH HOH . G 5 HOH A 49 449 1379 HOH HOH . G 5 HOH A 50 450 1407 HOH HOH . G 5 HOH A 51 451 1440 HOH HOH . G 5 HOH A 52 452 1427 HOH HOH . G 5 HOH A 53 453 1393 HOH HOH . G 5 HOH A 54 454 14 HOH HOH . G 5 HOH A 55 455 1455 HOH HOH . G 5 HOH A 56 456 1380 HOH HOH . G 5 HOH A 57 457 1446 HOH HOH . G 5 HOH A 58 458 1400 HOH HOH . G 5 HOH A 59 459 1422 HOH HOH . G 5 HOH A 60 460 1389 HOH HOH . G 5 HOH A 61 461 1439 HOH HOH . G 5 HOH A 62 462 1382 HOH HOH . G 5 HOH A 63 463 9 HOH HOH . G 5 HOH A 64 464 1452 HOH HOH . G 5 HOH A 65 465 15 HOH HOH . G 5 HOH A 66 466 1374 HOH HOH . G 5 HOH A 67 467 1457 HOH HOH . G 5 HOH A 68 468 1413 HOH HOH . G 5 HOH A 69 469 1429 HOH HOH . G 5 HOH A 70 470 1408 HOH HOH . G 5 HOH A 71 471 13 HOH HOH . G 5 HOH A 72 472 1409 HOH HOH . G 5 HOH A 73 473 1365 HOH HOH . G 5 HOH A 74 474 1449 HOH HOH . G 5 HOH A 75 475 1412 HOH HOH . G 5 HOH A 76 476 1451 HOH HOH . G 5 HOH A 77 477 1405 HOH HOH . G 5 HOH A 78 478 1431 HOH HOH . G 5 HOH A 79 479 1410 HOH HOH . G 5 HOH A 80 480 1398 HOH HOH . G 5 HOH A 81 481 1397 HOH HOH . G 5 HOH A 82 482 6 HOH HOH . G 5 HOH A 83 483 1394 HOH HOH . G 5 HOH A 84 484 1456 HOH HOH . G 5 HOH A 85 485 1425 HOH HOH . G 5 HOH A 86 486 1399 HOH HOH . G 5 HOH A 87 487 1421 HOH HOH . G 5 HOH A 88 488 1376 HOH HOH . G 5 HOH A 89 489 1448 HOH HOH . G 5 HOH A 90 490 1388 HOH HOH . G 5 HOH A 91 491 1454 HOH HOH . G 5 HOH A 92 492 1 HOH HOH . G 5 HOH A 93 493 1396 HOH HOH . G 5 HOH A 94 494 1426 HOH HOH . G 5 HOH A 95 495 1460 HOH HOH . G 5 HOH A 96 496 1442 HOH HOH . G 5 HOH A 97 497 1402 HOH HOH . G 5 HOH A 98 498 1418 HOH HOH . G 5 HOH A 99 499 1416 HOH HOH . G 5 HOH A 100 500 2 HOH HOH . G 5 HOH A 101 501 1386 HOH HOH . G 5 HOH A 102 502 1441 HOH HOH . G 5 HOH A 103 503 1391 HOH HOH . G 5 HOH A 104 504 10 HOH HOH . G 5 HOH A 105 505 1458 HOH HOH . G 5 HOH A 106 506 3 HOH HOH . G 5 HOH A 107 507 1406 HOH HOH . H 5 HOH C 1 101 4 HOH HOH . H 5 HOH C 2 102 1420 HOH HOH . H 5 HOH C 3 103 18 HOH HOH . H 5 HOH C 4 104 1463 HOH HOH . H 5 HOH C 5 105 1378 HOH HOH . H 5 HOH C 6 106 1419 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 10.162 _atom_site.Cartn_y -39.999 _atom_site.Cartn_z 0.889 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #