data_8JUJ
#
_model_server_result.job_id            PSUrBpVIjO4IcQuNEzG4BQ 
_model_server_result.datetime_utc      '2024-10-11 02:19:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8juj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8JUJ 
#
_exptl.entry_id    8JUJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              247.142 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "PYRIDOXAL-5'-PHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JUJ 
_cell.length_a            52.67 
_cell.length_b            85.233 
_cell.length_c            167.965 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JUJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C8 H10 N O6 P' 
_chem_comp.formula_weight    247.142 
_chem_comp.id                PLP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "PYRIDOXAL-5'-PHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'VITAMIN B6 Phosphate' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 PLP doub 260 n y 
N1 C6 PLP sing 261 n y 
C2 C2A PLP sing 262 n n 
C2 C3 PLP sing 263 n y 
C2A H2A1 PLP sing 264 n n 
C2A H2A2 PLP sing 265 n n 
C2A H2A3 PLP sing 266 n n 
C3 O3 PLP sing 267 n n 
C3 C4 PLP doub 268 n y 
O3 HO3 PLP sing 269 n n 
C4 C4A PLP sing 270 n n 
C4 C5 PLP sing 271 n y 
C4A O4A PLP doub 272 n n 
C4A H4A PLP sing 273 n n 
C5 C6 PLP doub 274 n y 
C5 C5A PLP sing 275 n n 
C6 H6 PLP sing 276 n n 
C5A O4P PLP sing 277 n n 
C5A H5A1 PLP sing 278 n n 
C5A H5A2 PLP sing 279 n n 
O4P P PLP sing 280 n n 
P O1P PLP doub 281 n n 
P O2P PLP sing 282 n n 
P O3P PLP sing 283 n n 
O2P HOP2 PLP sing 284 n n 
O3P HOP3 PLP sing 285 n n 
#
_atom_sites.entry_id                     8JUJ 
_atom_sites.fract_transf_matrix[1][1]    0.018986 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011733 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005954 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PLP A 1 401 401 PLP PLP . 
D 2 PLP B 1 401 401 PLP PLP . 
E 3 HOH A 1 501 672 HOH HOH . 
E 3 HOH A 2 502 211 HOH HOH . 
E 3 HOH A 3 503 824 HOH HOH . 
E 3 HOH A 4 504 396 HOH HOH . 
E 3 HOH A 5 505 837 HOH HOH . 
E 3 HOH A 6 506 164 HOH HOH . 
E 3 HOH A 7 507 210 HOH HOH . 
E 3 HOH A 8 508 847 HOH HOH . 
E 3 HOH A 9 509 215 HOH HOH . 
E 3 HOH A 10 510 116 HOH HOH . 
E 3 HOH A 11 511 247 HOH HOH . 
E 3 HOH A 12 512 14 HOH HOH . 
E 3 HOH A 13 513 822 HOH HOH . 
E 3 HOH A 14 514 77 HOH HOH . 
E 3 HOH A 15 515 37 HOH HOH . 
E 3 HOH A 16 516 39 HOH HOH . 
E 3 HOH A 17 517 66 HOH HOH . 
E 3 HOH A 18 518 163 HOH HOH . 
E 3 HOH A 19 519 179 HOH HOH . 
E 3 HOH A 20 520 850 HOH HOH . 
E 3 HOH A 21 521 28 HOH HOH . 
E 3 HOH A 22 522 71 HOH HOH . 
E 3 HOH A 23 523 151 HOH HOH . 
E 3 HOH A 24 524 239 HOH HOH . 
E 3 HOH A 25 525 20 HOH HOH . 
E 3 HOH A 26 526 829 HOH HOH . 
E 3 HOH A 27 527 833 HOH HOH . 
E 3 HOH A 28 528 70 HOH HOH . 
E 3 HOH A 29 529 218 HOH HOH . 
E 3 HOH A 30 530 100 HOH HOH . 
E 3 HOH A 31 531 816 HOH HOH . 
E 3 HOH A 32 532 180 HOH HOH . 
E 3 HOH A 33 533 130 HOH HOH . 
E 3 HOH A 34 534 99 HOH HOH . 
E 3 HOH A 35 535 56 HOH HOH . 
E 3 HOH A 36 536 82 HOH HOH . 
E 3 HOH A 37 537 52 HOH HOH . 
E 3 HOH A 38 538 155 HOH HOH . 
E 3 HOH A 39 539 35 HOH HOH . 
E 3 HOH A 40 540 826 HOH HOH . 
E 3 HOH A 41 541 49 HOH HOH . 
E 3 HOH A 42 542 188 HOH HOH . 
E 3 HOH A 43 543 831 HOH HOH . 
E 3 HOH A 44 544 21 HOH HOH . 
E 3 HOH A 45 545 206 HOH HOH . 
E 3 HOH A 46 546 17 HOH HOH . 
E 3 HOH A 47 547 41 HOH HOH . 
E 3 HOH A 48 548 72 HOH HOH . 
E 3 HOH A 49 549 220 HOH HOH . 
E 3 HOH A 50 550 828 HOH HOH . 
E 3 HOH A 51 551 248 HOH HOH . 
E 3 HOH A 52 552 205 HOH HOH . 
E 3 HOH A 53 553 182 HOH HOH . 
E 3 HOH A 54 554 114 HOH HOH . 
E 3 HOH A 55 555 311 HOH HOH . 
E 3 HOH A 56 556 87 HOH HOH . 
E 3 HOH A 57 557 61 HOH HOH . 
E 3 HOH A 58 558 845 HOH HOH . 
E 3 HOH A 59 559 9 HOH HOH . 
E 3 HOH A 60 560 69 HOH HOH . 
E 3 HOH A 61 561 156 HOH HOH . 
E 3 HOH A 62 562 107 HOH HOH . 
E 3 HOH A 63 563 29 HOH HOH . 
E 3 HOH A 64 564 46 HOH HOH . 
E 3 HOH A 65 565 851 HOH HOH . 
E 3 HOH A 66 566 840 HOH HOH . 
E 3 HOH A 67 567 292 HOH HOH . 
E 3 HOH A 68 568 279 HOH HOH . 
E 3 HOH A 69 569 836 HOH HOH . 
E 3 HOH A 70 570 167 HOH HOH . 
E 3 HOH A 71 571 244 HOH HOH . 
E 3 HOH A 72 572 153 HOH HOH . 
E 3 HOH A 73 573 97 HOH HOH . 
E 3 HOH A 74 574 11 HOH HOH . 
E 3 HOH A 75 575 7 HOH HOH . 
E 3 HOH A 76 576 44 HOH HOH . 
E 3 HOH A 77 577 183 HOH HOH . 
E 3 HOH A 78 578 175 HOH HOH . 
E 3 HOH A 79 579 838 HOH HOH . 
E 3 HOH A 80 580 60 HOH HOH . 
E 3 HOH A 81 581 12 HOH HOH . 
E 3 HOH A 82 582 73 HOH HOH . 
E 3 HOH A 83 583 135 HOH HOH . 
E 3 HOH A 84 584 171 HOH HOH . 
E 3 HOH A 85 585 18 HOH HOH . 
E 3 HOH A 86 586 197 HOH HOH . 
E 3 HOH A 87 587 55 HOH HOH . 
E 3 HOH A 88 588 25 HOH HOH . 
E 3 HOH A 89 589 144 HOH HOH . 
E 3 HOH A 90 590 117 HOH HOH . 
E 3 HOH A 91 591 123 HOH HOH . 
E 3 HOH A 92 592 53 HOH HOH . 
E 3 HOH A 93 593 232 HOH HOH . 
E 3 HOH A 94 594 573 HOH HOH . 
E 3 HOH A 95 595 241 HOH HOH . 
E 3 HOH A 96 596 793 HOH HOH . 
E 3 HOH A 97 597 846 HOH HOH . 
E 3 HOH A 98 598 692 HOH HOH . 
E 3 HOH A 99 599 694 HOH HOH . 
E 3 HOH A 100 600 717 HOH HOH . 
E 3 HOH A 101 601 698 HOH HOH . 
E 3 HOH A 102 602 701 HOH HOH . 
E 3 HOH A 103 603 217 HOH HOH . 
E 3 HOH A 104 604 667 HOH HOH . 
E 3 HOH A 105 605 708 HOH HOH . 
E 3 HOH A 106 606 443 HOH HOH . 
E 3 HOH A 107 607 707 HOH HOH . 
F 3 HOH B 1 501 272 HOH HOH . 
F 3 HOH B 2 502 149 HOH HOH . 
F 3 HOH B 3 503 92 HOH HOH . 
F 3 HOH B 4 504 3 HOH HOH . 
F 3 HOH B 5 505 817 HOH HOH . 
F 3 HOH B 6 506 76 HOH HOH . 
F 3 HOH B 7 507 81 HOH HOH . 
F 3 HOH B 8 508 178 HOH HOH . 
F 3 HOH B 9 509 50 HOH HOH . 
F 3 HOH B 10 510 33 HOH HOH . 
F 3 HOH B 11 511 216 HOH HOH . 
F 3 HOH B 12 512 843 HOH HOH . 
F 3 HOH B 13 513 2 HOH HOH . 
F 3 HOH B 14 514 303 HOH HOH . 
F 3 HOH B 15 515 275 HOH HOH . 
F 3 HOH B 16 516 119 HOH HOH . 
F 3 HOH B 17 517 125 HOH HOH . 
F 3 HOH B 18 518 79 HOH HOH . 
F 3 HOH B 19 519 108 HOH HOH . 
F 3 HOH B 20 520 825 HOH HOH . 
F 3 HOH B 21 521 58 HOH HOH . 
F 3 HOH B 22 522 273 HOH HOH . 
F 3 HOH B 23 523 243 HOH HOH . 
F 3 HOH B 24 524 839 HOH HOH . 
F 3 HOH B 25 525 214 HOH HOH . 
F 3 HOH B 26 526 30 HOH HOH . 
F 3 HOH B 27 527 4 HOH HOH . 
F 3 HOH B 28 528 8 HOH HOH . 
F 3 HOH B 29 529 159 HOH HOH . 
F 3 HOH B 30 530 54 HOH HOH . 
F 3 HOH B 31 531 5 HOH HOH . 
F 3 HOH B 32 532 1 HOH HOH . 
F 3 HOH B 33 533 287 HOH HOH . 
F 3 HOH B 34 534 74 HOH HOH . 
F 3 HOH B 35 535 134 HOH HOH . 
F 3 HOH B 36 536 65 HOH HOH . 
F 3 HOH B 37 537 213 HOH HOH . 
F 3 HOH B 38 538 109 HOH HOH . 
F 3 HOH B 39 539 89 HOH HOH . 
F 3 HOH B 40 540 194 HOH HOH . 
F 3 HOH B 41 541 124 HOH HOH . 
F 3 HOH B 42 542 67 HOH HOH . 
F 3 HOH B 43 543 51 HOH HOH . 
F 3 HOH B 44 544 96 HOH HOH . 
F 3 HOH B 45 545 158 HOH HOH . 
F 3 HOH B 46 546 47 HOH HOH . 
F 3 HOH B 47 547 138 HOH HOH . 
F 3 HOH B 48 548 34 HOH HOH . 
F 3 HOH B 49 549 835 HOH HOH . 
F 3 HOH B 50 550 700 HOH HOH . 
F 3 HOH B 51 551 85 HOH HOH . 
F 3 HOH B 52 552 42 HOH HOH . 
F 3 HOH B 53 553 810 HOH HOH . 
F 3 HOH B 54 554 168 HOH HOH . 
F 3 HOH B 55 555 23 HOH HOH . 
F 3 HOH B 56 556 849 HOH HOH . 
F 3 HOH B 57 557 6 HOH HOH . 
F 3 HOH B 58 558 842 HOH HOH . 
F 3 HOH B 59 559 40 HOH HOH . 
F 3 HOH B 60 560 106 HOH HOH . 
F 3 HOH B 61 561 811 HOH HOH . 
F 3 HOH B 62 562 98 HOH HOH . 
F 3 HOH B 63 563 13 HOH HOH . 
F 3 HOH B 64 564 819 HOH HOH . 
F 3 HOH B 65 565 823 HOH HOH . 
F 3 HOH B 66 566 80 HOH HOH . 
F 3 HOH B 67 567 818 HOH HOH . 
F 3 HOH B 68 568 63 HOH HOH . 
F 3 HOH B 69 569 48 HOH HOH . 
F 3 HOH B 70 570 45 HOH HOH . 
F 3 HOH B 71 571 830 HOH HOH . 
F 3 HOH B 72 572 121 HOH HOH . 
F 3 HOH B 73 573 91 HOH HOH . 
F 3 HOH B 74 574 120 HOH HOH . 
F 3 HOH B 75 575 812 HOH HOH . 
F 3 HOH B 76 576 38 HOH HOH . 
F 3 HOH B 77 577 104 HOH HOH . 
F 3 HOH B 78 578 165 HOH HOH . 
F 3 HOH B 79 579 702 HOH HOH . 
F 3 HOH B 80 580 22 HOH HOH . 
F 3 HOH B 81 581 820 HOH HOH . 
F 3 HOH B 82 582 240 HOH HOH . 
F 3 HOH B 83 583 136 HOH HOH . 
F 3 HOH B 84 584 110 HOH HOH . 
F 3 HOH B 85 585 813 HOH HOH . 
F 3 HOH B 86 586 223 HOH HOH . 
F 3 HOH B 87 587 844 HOH HOH . 
F 3 HOH B 88 588 848 HOH HOH . 
F 3 HOH B 89 589 16 HOH HOH . 
F 3 HOH B 90 590 236 HOH HOH . 
F 3 HOH B 91 591 160 HOH HOH . 
F 3 HOH B 92 592 83 HOH HOH . 
F 3 HOH B 93 593 94 HOH HOH . 
F 3 HOH B 94 594 212 HOH HOH . 
F 3 HOH B 95 595 169 HOH HOH . 
F 3 HOH B 96 596 841 HOH HOH . 
F 3 HOH B 97 597 31 HOH HOH . 
F 3 HOH B 98 598 834 HOH HOH . 
F 3 HOH B 99 599 131 HOH HOH . 
F 3 HOH B 100 600 126 HOH HOH . 
F 3 HOH B 101 601 84 HOH HOH . 
F 3 HOH B 102 602 815 HOH HOH . 
F 3 HOH B 103 603 302 HOH HOH . 
F 3 HOH B 104 604 821 HOH HOH . 
F 3 HOH B 105 605 827 HOH HOH . 
F 3 HOH B 106 606 814 HOH HOH . 
F 3 HOH B 107 607 224 HOH HOH . 
F 3 HOH B 108 608 118 HOH HOH . 
F 3 HOH B 109 609 832 HOH HOH . 
F 3 HOH B 110 610 15 HOH HOH . 
F 3 HOH B 111 611 809 HOH HOH . 
F 3 HOH B 112 612 86 HOH HOH . 
F 3 HOH B 113 613 245 HOH HOH . 
F 3 HOH B 114 614 387 HOH HOH . 
F 3 HOH B 115 615 660 HOH HOH . 
F 3 HOH B 116 616 727 HOH HOH . 
F 3 HOH B 117 617 369 HOH HOH . 
F 3 HOH B 118 618 253 HOH HOH . 
F 3 HOH B 119 619 792 HOH HOH . 
F 3 HOH B 120 620 796 HOH HOH . 
F 3 HOH B 121 621 798 HOH HOH . 
F 3 HOH B 122 622 226 HOH HOH . 
F 3 HOH B 123 623 697 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 PLP . . . D 2 10.8 27.167 -28.939 1 21.43 ? N1 PLP 401 B 1 
HETATM 2 C C2 PLP . . . D 2 11.242 28.394 -28.679 1 22.17 ? C2 PLP 401 B 1 
HETATM 3 C C2A PLP . . . D 2 10.768 29.511 -29.541 1 22.28 ? C2A PLP 401 B 1 
HETATM 4 C C3 PLP . . . D 2 12.116 28.634 -27.601 1 24.99 ? C3 PLP 401 B 1 
HETATM 5 O O3 PLP . . . D 2 12.517 29.906 -27.326 1 21 ? O3 PLP 401 B 1 
HETATM 6 C C4 PLP . . . D 2 12.505 27.546 -26.799 1 27.37 ? C4 PLP 401 B 1 
HETATM 7 C C4A PLP . . . D 2 13.437 27.778 -25.705 1 34.24 ? C4A PLP 401 B 1 
HETATM 8 O O4A PLP . . . D 2 14.191 28.729 -25.632 1 46.72 ? O4A PLP 401 B 1 
HETATM 9 C C5 PLP . . . D 2 12.02 26.267 -27.095 1 25.69 ? C5 PLP 401 B 1 
HETATM 10 C C6 PLP . . . D 2 11.169 26.133 -28.155 1 24.38 ? C6 PLP 401 B 1 
HETATM 11 C C5A PLP . . . D 2 12.45 25.055 -26.315 1 30 ? C5A PLP 401 B 1 
HETATM 12 O O4P PLP . . . D 2 11.942 25.077 -24.942 1 31.33 ? O4P PLP 401 B 1 
HETATM 13 P P PLP . . . D 2 11.925 23.726 -23.996 1 36.89 ? P PLP 401 B 1 
HETATM 14 O O1P PLP . . . D 2 10.841 22.82 -24.573 1 27.23 ? O1P PLP 401 B 1 
HETATM 15 O O2P PLP . . . D 2 11.572 24.291 -22.622 1 33.69 ? O2P PLP 401 B 1 
HETATM 16 O O3P PLP . . . D 2 13.33 23.161 -24.06 1 29.23 ? O3P PLP 401 B 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#