data_8JUY
#
_model_server_result.job_id            TkSYv4Fn0OkfxsPruFBLiw 
_model_server_result.datetime_utc      '2024-11-26 06:56:59' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8juy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1402}' 
#
_entry.id    8JUY 
#
_exptl.entry_id    8JUY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JUY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JUY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8JUY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 ADP A 1 1301 5295 ADP ADP . 
H 3 ATP B 1 1401 5295 ATP ATP . 
I 3 ATP C 1 1401 5295 ATP ATP . 
J 3 ATP C 1 1402 5295 ATP ATP . 
K 3 ATP E 1 1401 5295 ATP ATP . 
L 3 ATP F 1 1401 5295 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . J 3 169.556 177.134 175.909 1 55.39 ? PG ATP 1402 C 1 
HETATM 2 O O1G ATP . . . J 3 169.23 176.137 176.992 1 55.39 ? O1G ATP 1402 C 1 
HETATM 3 O O2G ATP . . . J 3 171.007 177.081 175.469 1 55.39 ? O2G ATP 1402 C 1 
HETATM 4 O O3G ATP . . . J 3 168.744 177.075 174.593 1 55.39 ? O3G ATP 1402 C 1 
HETATM 5 P PB ATP . . . J 3 170.271 179.738 177.09 1 55.39 ? PB ATP 1402 C 1 
HETATM 6 O O1B ATP . . . J 3 170.923 180.549 176.058 1 55.39 ? O1B ATP 1402 C 1 
HETATM 7 O O2B ATP . . . J 3 171.154 179.046 178.122 1 55.39 ? O2B ATP 1402 C 1 
HETATM 8 O O3B ATP . . . J 3 169.383 178.618 176.452 1 55.39 ? O3B ATP 1402 C 1 
HETATM 9 P PA ATP . . . J 3 169.346 181.97 178.699 1 55.39 ? PA ATP 1402 C 1 
HETATM 10 O O1A ATP . . . J 3 168.899 183.126 177.9 1 55.39 -1 O1A ATP 1402 C 1 
HETATM 11 O O2A ATP . . . J 3 168.687 181.744 180.043 1 55.39 ? O2A ATP 1402 C 1 
HETATM 12 O O3A ATP . . . J 3 169.256 180.637 177.908 1 55.39 ? O3A ATP 1402 C 1 
HETATM 13 O O5' ATP . . . J 3 170.9 182.089 178.94 1 55.39 ? O5' ATP 1402 C 1 
HETATM 14 C C5' ATP . . . J 3 171.456 183.183 179.696 1 55.39 ? C5' ATP 1402 C 1 
HETATM 15 C C4' ATP . . . J 3 172.13 182.655 180.931 1 55.39 ? C4' ATP 1402 C 1 
HETATM 16 O O4' ATP . . . J 3 173.52 183.035 180.92 1 55.39 ? O4' ATP 1402 C 1 
HETATM 17 C C3' ATP . . . J 3 171.605 183.214 182.241 1 55.39 ? C3' ATP 1402 C 1 
HETATM 18 O O3' ATP . . . J 3 171.935 182.342 183.312 1 55.39 ? O3' ATP 1402 C 1 
HETATM 19 C C2' ATP . . . J 3 172.367 184.535 182.36 1 55.39 ? C2' ATP 1402 C 1 
HETATM 20 O O2' ATP . . . J 3 172.618 184.881 183.715 1 55.39 ? O2' ATP 1402 C 1 
HETATM 21 C C1' ATP . . . J 3 173.695 184.23 181.659 1 55.39 ? C1' ATP 1402 C 1 
HETATM 22 N N9 ATP . . . J 3 174.109 185.275 180.734 1 55.39 ? N9 ATP 1402 C 1 
HETATM 23 C C8 ATP . . . J 3 174.265 185.161 179.38 1 55.39 ? C8 ATP 1402 C 1 
HETATM 24 N N7 ATP . . . J 3 174.638 186.268 178.788 1 55.39 ? N7 ATP 1402 C 1 
HETATM 25 C C5 ATP . . . J 3 174.735 187.176 179.829 1 55.39 ? C5 ATP 1402 C 1 
HETATM 26 C C6 ATP . . . J 3 175.081 188.536 179.866 1 55.39 ? C6 ATP 1402 C 1 
HETATM 27 N N6 ATP . . . J 3 175.415 189.248 178.788 1 55.39 ? N6 ATP 1402 C 1 
HETATM 28 N N1 ATP . . . J 3 175.075 189.149 181.064 1 55.39 ? N1 ATP 1402 C 1 
HETATM 29 C C2 ATP . . . J 3 174.74 188.443 182.146 1 55.39 ? C2 ATP 1402 C 1 
HETATM 30 N N3 ATP . . . J 3 174.388 187.16 182.234 1 55.39 ? N3 ATP 1402 C 1 
HETATM 31 C C4 ATP . . . J 3 174.409 186.579 181.034 1 55.39 ? C4 ATP 1402 C 1 
#
_model_server_stats.io_time_ms              67 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#