data_8JV8
#
_model_server_result.job_id            BMwPPTGqc-aC-RjI9bTBLQ 
_model_server_result.datetime_utc      '2024-11-25 20:56:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jv8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":401}' 
#
_entry.id    8JV8 
#
_exptl.entry_id    8JV8 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JV8 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JV8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 J N N 
? 2 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 99 A CYS 119 1_555 A SG CYS 148 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 A SG CYS 109 A CYS 129 1_555 A SG CYS 132 A CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf3 A SG CYS 115 A CYS 135 1_555 A SG CYS 142 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 A SG CYS 196 A CYS 216 1_555 A SG CYS 206 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 A SG CYS 240 A CYS 260 1_555 A SG CYS 249 A CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 B SG CYS 99 B CYS 119 1_555 B SG CYS 148 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf7 B SG CYS 109 B CYS 129 1_555 B SG CYS 132 B CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? 
disulf ? disulf8 B SG CYS 115 B CYS 135 1_555 B SG CYS 142 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf9 B SG CYS 196 B CYS 216 1_555 B SG CYS 206 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf10 B SG CYS 240 B CYS 260 1_555 B SG CYS 249 B CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf11 C SG CYS 99 C CYS 119 1_555 C SG CYS 148 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf12 C SG CYS 109 C CYS 129 1_555 C SG CYS 132 C CYS 152 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf13 C SG CYS 115 C CYS 135 1_555 C SG CYS 142 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf14 C SG CYS 196 C CYS 216 1_555 C SG CYS 206 C CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf15 C SG CYS 240 C CYS 260 1_555 C SG CYS 249 C CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
covale ? covale1 A ND2 ASN 167 A ASN 187 1_555 D C1 NAG . A NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale2 A ND2 ASN 193 A ASN 213 1_555 E C1 NAG . A NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? 
covale ? covale3 B ND2 ASN 167 B ASN 187 1_555 G C1 NAG . B NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? 
covale ? covale4 B ND2 ASN 193 B ASN 213 1_555 H C1 NAG . B NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? 
covale ? covale5 C ND2 ASN 167 C ASN 187 1_555 J C1 NAG . C NAG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? 
covale ? covale6 C ND2 ASN 193 C ASN 213 1_555 K C1 NAG . C NAG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 293 n n 
C1 O1 NAG sing 294 n n 
C1 O5 NAG sing 295 n n 
C1 H1 NAG sing 296 n n 
C2 C3 NAG sing 297 n n 
C2 N2 NAG sing 298 n n 
C2 H2 NAG sing 299 n n 
C3 C4 NAG sing 300 n n 
C3 O3 NAG sing 301 n n 
C3 H3 NAG sing 302 n n 
C4 C5 NAG sing 303 n n 
C4 O4 NAG sing 304 n n 
C4 H4 NAG sing 305 n n 
C5 C6 NAG sing 306 n n 
C5 O5 NAG sing 307 n n 
C5 H5 NAG sing 308 n n 
C6 O6 NAG sing 309 n n 
C6 H61 NAG sing 310 n n 
C6 H62 NAG sing 311 n n 
C7 C8 NAG sing 312 n n 
C7 N2 NAG sing 313 n n 
C7 O7 NAG doub 314 n n 
C8 H81 NAG sing 315 n n 
C8 H82 NAG sing 316 n n 
C8 H83 NAG sing 317 n n 
N2 HN2 NAG sing 318 n n 
O1 HO1 NAG sing 319 n n 
O3 HO3 NAG sing 320 n n 
O4 HO4 NAG sing 321 n n 
O6 HO6 NAG sing 322 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8JV8 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 NAG A 1 401 401 NAG NAG . 
E 2 NAG A 1 402 402 NAG NAG . 
F 3 20V A 1 403 405 20V PPN . 
G 2 NAG B 1 401 401 NAG NAG . 
H 2 NAG B 1 402 402 NAG NAG . 
I 3 20V B 1 403 405 20V PPN . 
J 2 NAG C 1 401 401 NAG NAG . 
K 2 NAG C 1 402 402 NAG NAG . 
L 3 20V C 1 403 405 20V PPN . 
M 4 HOH A 1 501 404 HOH HOH . 
N 4 HOH B 1 501 404 HOH HOH . 
O 4 HOH C 1 501 404 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . J 2 115.182 134.234 87.723 1 147.87 ? C1 NAG 401 C 1 
HETATM 2 C C2 NAG . . . J 2 116.445 134.37 86.875 1 146.2 ? C2 NAG 401 C 1 
HETATM 3 C C3 NAG . . . J 2 117.032 135.77 87.025 1 147.73 ? C3 NAG 401 C 1 
HETATM 4 C C4 NAG . . . J 2 115.977 136.824 86.715 1 148.31 ? C4 NAG 401 C 1 
HETATM 5 C C5 NAG . . . J 2 114.735 136.591 87.569 1 149.1 ? C5 NAG 401 C 1 
HETATM 6 C C6 NAG . . . J 2 113.6 137.528 87.229 1 147.74 ? C6 NAG 401 C 1 
HETATM 7 C C7 NAG . . . J 2 118.347 132.901 86.384 1 147.37 ? C7 NAG 401 C 1 
HETATM 8 C C8 NAG . . . J 2 119.285 131.865 86.925 1 145.61 ? C8 NAG 401 C 1 
HETATM 9 N N2 NAG . . . J 2 117.428 133.363 87.238 1 143.95 ? N2 NAG 401 C 1 
HETATM 10 O O3 NAG . . . J 2 118.139 135.92 86.144 1 145.82 ? O3 NAG 401 C 1 
HETATM 11 O O4 NAG . . . J 2 116.494 138.123 86.979 1 145.53 ? O4 NAG 401 C 1 
HETATM 12 O O5 NAG . . . J 2 114.246 135.257 87.361 1 152.14 ? O5 NAG 401 C 1 
HETATM 13 O O6 NAG . . . J 2 113.625 137.893 85.856 1 149.19 ? O6 NAG 401 C 1 
HETATM 14 O O7 NAG . . . J 2 118.419 133.304 85.227 1 150 ? O7 NAG 401 C 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           14 
#