data_8JVJ # _model_server_result.job_id 6xwJWA-B9WsUyu-gBhQmTQ _model_server_result.datetime_utc '2024-11-14 21:38:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jvj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 8JVJ # _exptl.entry_id 8JVJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 572.628 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JVJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JVJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'C25 H23 F3 N8 O S2' _chem_comp.formula_weight 572.628 _chem_comp.id F9M _chem_comp.mon_nstd_flag . _chem_comp.name '[6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N12 C30 F9M sing 83 n n N12 C32 F9M sing 84 n n C15 C17 F9M sing 85 n n C15 C19 F9M sing 86 n n C15 N07 F9M sing 87 n n C17 C18 F9M sing 88 n n C20 C16 F9M sing 89 n n C20 N08 F9M sing 90 n n C21 C23 F9M sing 91 n n C21 N07 F9M sing 92 n n C21 O06 F9M doub 93 n n C22 N08 F9M sing 94 n n C22 N09 F9M doub 95 n y C22 N10 F9M sing 96 n y C24 C23 F9M doub 97 n y C24 C29 F9M sing 98 n y C26 C28 F9M doub 99 n y C26 N09 F9M sing 100 n y C28 C27 F9M sing 101 n y C28 C31 F9M sing 102 n n C16 C18 F9M sing 103 n n C16 N07 F9M sing 104 n n C19 N08 F9M sing 105 n n C23 C25 F9M sing 106 n y C25 N11 F9M doub 107 n y C27 N10 F9M doub 108 n y C29 C30 F9M doub 109 n y C30 N11 F9M sing 110 n y C31 F03 F9M sing 111 n n C31 F04 F9M sing 112 n n C31 F05 F9M sing 113 n n C32 N13 F9M doub 114 n y C32 S01 F9M sing 115 n y C33 C34 F9M doub 116 n y C33 C35 F9M sing 117 n n C33 N13 F9M sing 118 n y C34 S01 F9M sing 119 n y C35 C36 F9M doub 120 n y C35 S02 F9M sing 121 n y C36 C38 F9M sing 122 n n C36 N14 F9M sing 123 n y C37 C39 F9M sing 124 n n C37 N14 F9M doub 125 n y C37 S02 F9M sing 126 n y C15 H1 F9M sing 127 n n C17 H2 F9M sing 128 n n C17 H3 F9M sing 129 n n C20 H4 F9M sing 130 n n C20 H5 F9M sing 131 n n C24 H6 F9M sing 132 n n C26 H7 F9M sing 133 n n C16 H8 F9M sing 134 n n C18 H9 F9M sing 135 n n C18 H10 F9M sing 136 n n C19 H11 F9M sing 137 n n C19 H12 F9M sing 138 n n C25 H13 F9M sing 139 n n C27 H14 F9M sing 140 n n C29 H15 F9M sing 141 n n C34 H16 F9M sing 142 n n C38 H20 F9M sing 143 n n C38 H21 F9M sing 144 n n C38 H22 F9M sing 145 n n C39 H23 F9M sing 146 n n C39 H24 F9M sing 147 n n C39 H25 F9M sing 148 n n N12 H30 F9M sing 149 n n # _atom_sites.entry_id 8JVJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 F9M A 1 1201 801 F9M LIG . J 3 F9M B 1 1201 801 F9M LIG . K 3 F9M C 1 1201 801 F9M LIG . L 3 F9M D 1 1201 801 F9M LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N12 F9M . . . I 3 103.348 106.73 142.175 1 75.39 ? N12 F9M 1201 A 1 HETATM 2 C C15 F9M . . . I 3 98.232 107.631 138.369 1 75.39 ? C15 F9M 1201 A 1 HETATM 3 C C17 F9M . . . I 3 97.782 107.616 136.92 1 75.39 ? C17 F9M 1201 A 1 HETATM 4 C C20 F9M . . . I 3 95.489 107.925 138.581 1 75.39 ? C20 F9M 1201 A 1 HETATM 5 C C21 F9M . . . I 3 97.897 105.829 140.082 1 75.39 ? C21 F9M 1201 A 1 HETATM 6 C C22 F9M . . . I 3 96.131 110.132 137.465 1 75.39 ? C22 F9M 1201 A 1 HETATM 7 C C24 F9M . . . I 3 100.102 104.876 141.04 1 75.39 ? C24 F9M 1201 A 1 HETATM 8 C C26 F9M . . . I 3 94.812 110.808 135.421 1 75.39 ? C26 F9M 1201 A 1 HETATM 9 C C28 F9M . . . I 3 95.62 112.054 135.339 1 75.39 ? C28 F9M 1201 A 1 HETATM 10 C C16 F9M . . . I 3 96.252 106.646 138.327 1 75.39 ? C16 F9M 1201 A 1 HETATM 11 C C18 F9M . . . I 3 96.678 106.696 136.883 1 75.39 ? C18 F9M 1201 A 1 HETATM 12 C C19 F9M . . . I 3 97.848 108.968 138.921 1 75.39 ? C19 F9M 1201 A 1 HETATM 13 C C23 F9M . . . I 3 99.292 106.045 140.621 1 75.39 ? C23 F9M 1201 A 1 HETATM 14 C C25 F9M . . . I 3 99.847 107.458 140.715 1 75.39 ? C25 F9M 1201 A 1 HETATM 15 C C27 F9M . . . I 3 96.684 112.325 136.338 1 75.39 ? C27 F9M 1201 A 1 HETATM 16 C C29 F9M . . . I 3 101.469 105.101 141.566 1 75.39 ? C29 F9M 1201 A 1 HETATM 17 C C30 F9M . . . I 3 102.023 106.513 141.66 1 75.39 ? C30 F9M 1201 A 1 HETATM 18 C C31 F9M . . . I 3 95.35 113.057 134.228 1 75.39 ? C31 F9M 1201 A 1 HETATM 19 C C32 F9M . . . I 3 104.409 105.785 141.91 1 75.39 ? C32 F9M 1201 A 1 HETATM 20 C C33 F9M . . . I 3 106.583 104.825 141.606 1 75.39 ? C33 F9M 1201 A 1 HETATM 21 C C34 F9M . . . I 3 105.675 103.75 141.344 1 75.39 ? C34 F9M 1201 A 1 HETATM 22 C C35 F9M . . . I 3 108.086 104.76 141.559 1 75.39 ? C35 F9M 1201 A 1 HETATM 23 C C36 F9M . . . I 3 108.864 103.57 141.488 1 75.39 ? C36 F9M 1201 A 1 HETATM 24 C C37 F9M . . . I 3 110.433 105.402 141.513 1 75.39 ? C37 F9M 1201 A 1 HETATM 25 C C38 F9M . . . I 3 108.307 102.154 141.445 1 75.39 ? C38 F9M 1201 A 1 HETATM 26 C C39 F9M . . . I 3 111.698 106.248 141.505 1 75.39 ? C39 F9M 1201 A 1 HETATM 27 F F03 F9M . . . I 3 94.702 114.134 134.751 1 75.39 ? F03 F9M 1201 A 1 HETATM 28 F F04 F9M . . . I 3 94.582 112.48 133.262 1 75.39 ? F04 F9M 1201 A 1 HETATM 29 F F05 F9M . . . I 3 96.524 113.463 133.676 1 75.39 ? F05 F9M 1201 A 1 HETATM 30 N N07 F9M . . . I 3 97.475 106.643 138.982 1 75.39 ? N07 F9M 1201 A 1 HETATM 31 N N08 F9M . . . I 3 96.384 109.186 138.516 1 75.39 ? N08 F9M 1201 A 1 HETATM 32 N N09 F9M . . . I 3 95.072 109.855 136.474 1 75.39 ? N09 F9M 1201 A 1 HETATM 33 N N10 F9M . . . I 3 96.937 111.369 137.39 1 75.39 ? N10 F9M 1201 A 1 HETATM 34 N N11 F9M . . . I 3 101.213 107.676 141.238 1 75.39 ? N11 F9M 1201 A 1 HETATM 35 N N13 F9M . . . I 3 105.779 106.109 141.96 1 75.39 ? N13 F9M 1201 A 1 HETATM 36 N N14 F9M . . . I 3 110.368 103.99 141.46 1 75.39 ? N14 F9M 1201 A 1 HETATM 37 O O06 F9M . . . I 3 97.187 105.011 140.546 1 75.39 ? O06 F9M 1201 A 1 HETATM 38 S S01 F9M . . . I 3 104.288 104.306 141.516 1 75.39 ? S01 F9M 1201 A 1 HETATM 39 S S02 F9M . . . I 3 109.008 105.939 141.581 1 75.39 ? S02 F9M 1201 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 619 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 39 #