data_8JVJ
#
_model_server_result.job_id            kYzAzkZ06vcLxfecaIy5IQ 
_model_server_result.datetime_utc      '2024-11-14 21:44:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jvj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1201}' 
#
_entry.id    8JVJ 
#
_exptl.entry_id    8JVJ 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              572.628 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JVJ 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JVJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    octameric 
_pdbx_struct_assembly.oligomeric_count      8 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
_chem_comp.formula           'C25 H23 F3 N8 O S2' 
_chem_comp.formula_weight    572.628 
_chem_comp.id                F9M 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[6-[[4-(2,4-dimethyl-1,3-thiazol-5-yl)-1,3-thiazol-2-yl]amino]pyridin-3-yl]-[(1~{S},5~{R})-3-[5-(trifluoromethyl)pyrimidin-2-yl]-3,8-diazabicyclo[3.2.1]octan-8-yl]methanone' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N12 C30 F9M sing 83 n n 
N12 C32 F9M sing 84 n n 
C15 C17 F9M sing 85 n n 
C15 C19 F9M sing 86 n n 
C15 N07 F9M sing 87 n n 
C17 C18 F9M sing 88 n n 
C20 C16 F9M sing 89 n n 
C20 N08 F9M sing 90 n n 
C21 C23 F9M sing 91 n n 
C21 N07 F9M sing 92 n n 
C21 O06 F9M doub 93 n n 
C22 N08 F9M sing 94 n n 
C22 N09 F9M doub 95 n y 
C22 N10 F9M sing 96 n y 
C24 C23 F9M doub 97 n y 
C24 C29 F9M sing 98 n y 
C26 C28 F9M doub 99 n y 
C26 N09 F9M sing 100 n y 
C28 C27 F9M sing 101 n y 
C28 C31 F9M sing 102 n n 
C16 C18 F9M sing 103 n n 
C16 N07 F9M sing 104 n n 
C19 N08 F9M sing 105 n n 
C23 C25 F9M sing 106 n y 
C25 N11 F9M doub 107 n y 
C27 N10 F9M doub 108 n y 
C29 C30 F9M doub 109 n y 
C30 N11 F9M sing 110 n y 
C31 F03 F9M sing 111 n n 
C31 F04 F9M sing 112 n n 
C31 F05 F9M sing 113 n n 
C32 N13 F9M doub 114 n y 
C32 S01 F9M sing 115 n y 
C33 C34 F9M doub 116 n y 
C33 C35 F9M sing 117 n n 
C33 N13 F9M sing 118 n y 
C34 S01 F9M sing 119 n y 
C35 C36 F9M doub 120 n y 
C35 S02 F9M sing 121 n y 
C36 C38 F9M sing 122 n n 
C36 N14 F9M sing 123 n y 
C37 C39 F9M sing 124 n n 
C37 N14 F9M doub 125 n y 
C37 S02 F9M sing 126 n y 
C15 H1 F9M sing 127 n n 
C17 H2 F9M sing 128 n n 
C17 H3 F9M sing 129 n n 
C20 H4 F9M sing 130 n n 
C20 H5 F9M sing 131 n n 
C24 H6 F9M sing 132 n n 
C26 H7 F9M sing 133 n n 
C16 H8 F9M sing 134 n n 
C18 H9 F9M sing 135 n n 
C18 H10 F9M sing 136 n n 
C19 H11 F9M sing 137 n n 
C19 H12 F9M sing 138 n n 
C25 H13 F9M sing 139 n n 
C27 H14 F9M sing 140 n n 
C29 H15 F9M sing 141 n n 
C34 H16 F9M sing 142 n n 
C38 H20 F9M sing 143 n n 
C38 H21 F9M sing 144 n n 
C38 H22 F9M sing 145 n n 
C39 H23 F9M sing 146 n n 
C39 H24 F9M sing 147 n n 
C39 H25 F9M sing 148 n n 
N12 H30 F9M sing 149 n n 
#
_atom_sites.entry_id                     8JVJ 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 3 F9M A 1 1201 801 F9M LIG . 
J 3 F9M B 1 1201 801 F9M LIG . 
K 3 F9M C 1 1201 801 F9M LIG . 
L 3 F9M D 1 1201 801 F9M LIG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N12 F9M . . . J 3 160.218 103.076 142.546 1 73.13 ? N12 F9M 1201 B 1 
HETATM 2 C C15 F9M . . . J 3 159.09 98.111 138.255 1 73.13 ? C15 F9M 1201 B 1 
HETATM 3 C C17 F9M . . . J 3 159.402 97.764 136.807 1 73.13 ? C17 F9M 1201 B 1 
HETATM 4 C C20 F9M . . . J 3 158.559 95.331 138.478 1 73.13 ? C20 F9M 1201 B 1 
HETATM 5 C C21 F9M . . . J 3 160.656 97.59 140.203 1 73.13 ? C21 F9M 1201 B 1 
HETATM 6 C C22 F9M . . . J 3 156.322 95.923 137.32 1 73.13 ? C22 F9M 1201 B 1 
HETATM 7 C C24 F9M . . . J 3 161.757 99.886 140.778 1 73.13 ? C24 F9M 1201 B 1 
HETATM 8 C C26 F9M . . . J 3 154.03 94.928 136.834 1 73.13 ? C26 F9M 1201 B 1 
HETATM 9 C C28 F9M . . . J 3 154.233 95.202 135.382 1 73.13 ? C28 F9M 1201 B 1 
HETATM 10 C C16 F9M . . . J 3 159.887 96.043 138.316 1 73.13 ? C16 F9M 1201 B 1 
HETATM 11 C C18 F9M . . . J 3 160.004 96.454 136.858 1 73.13 ? C18 F9M 1201 B 1 
HETATM 12 C C19 F9M . . . J 3 157.635 97.792 138.502 1 73.13 ? C19 F9M 1201 B 1 
HETATM 13 C C23 F9M . . . J 3 160.565 98.993 140.795 1 73.13 ? C23 F9M 1201 B 1 
HETATM 14 C C25 F9M . . . J 3 159.256 99.485 141.406 1 73.13 ? C25 F9M 1201 B 1 
HETATM 15 C C27 F9M . . . J 3 155.497 95.839 134.917 1 73.13 ? C27 F9M 1201 B 1 
HETATM 16 C C29 F9M . . . J 3 161.67 101.258 141.356 1 73.13 ? C29 F9M 1201 B 1 
HETATM 17 C C30 F9M . . . J 3 160.357 101.754 141.959 1 73.13 ? C30 F9M 1201 B 1 
HETATM 18 C C31 F9M . . . J 3 153.154 94.829 134.37 1 73.13 ? C31 F9M 1201 B 1 
HETATM 19 C C32 F9M . . . J 3 160.886 104.297 142.122 1 73.13 ? C32 F9M 1201 B 1 
HETATM 20 C C33 F9M . . . J 3 161.341 106.648 141.687 1 73.13 ? C33 F9M 1201 B 1 
HETATM 21 C C34 F9M . . . J 3 162.514 105.937 141.261 1 73.13 ? C34 F9M 1201 B 1 
HETATM 22 C C35 F9M . . . J 3 161.138 108.159 141.62 1 73.13 ? C35 F9M 1201 B 1 
HETATM 23 C C36 F9M . . . J 3 159.878 108.86 141.621 1 73.13 ? C36 F9M 1201 B 1 
HETATM 24 C C37 F9M . . . J 3 161.579 110.577 141.496 1 73.13 ? C37 F9M 1201 B 1 
HETATM 25 C C38 F9M . . . J 3 158.488 108.231 141.688 1 73.13 ? C38 F9M 1201 B 1 
HETATM 26 C C39 F9M . . . J 3 162.306 111.918 141.414 1 73.13 ? C39 F9M 1201 B 1 
HETATM 27 F F03 F9M . . . J 3 153.635 93.873 133.522 1 73.13 ? F03 F9M 1201 B 1 
HETATM 28 F F04 F9M . . . J 3 152.061 94.348 135.03 1 73.13 ? F04 F9M 1201 B 1 
HETATM 29 F F05 F9M . . . J 3 152.802 95.935 133.653 1 73.13 ? F05 F9M 1201 B 1 
HETATM 30 N N07 F9M . . . J 3 159.925 97.266 138.994 1 73.13 ? N07 F9M 1201 B 1 
HETATM 31 N N08 F9M . . . J 3 157.355 96.286 138.269 1 73.13 ? N08 F9M 1201 B 1 
HETATM 32 N N09 F9M . . . J 3 155.063 95.289 137.787 1 73.13 ? N09 F9M 1201 B 1 
HETATM 33 N N10 F9M . . . J 3 156.524 96.195 135.875 1 73.13 ? N10 F9M 1201 B 1 
HETATM 34 N N11 F9M . . . J 3 159.176 100.852 141.977 1 73.13 ? N11 F9M 1201 B 1 
HETATM 35 N N13 F9M . . . J 3 160.319 105.594 142.236 1 73.13 ? N13 F9M 1201 B 1 
HETATM 36 N N14 F9M . . . J 3 160.173 110.397 141.541 1 73.13 ? N14 F9M 1201 B 1 
HETATM 37 O O06 F9M . . . J 3 161.329 96.768 140.727 1 73.13 ? O06 F9M 1201 B 1 
HETATM 38 S S01 F9M . . . J 3 162.289 104.464 141.511 1 73.13 ? S01 F9M 1201 B 1 
HETATM 39 S S02 F9M . . . J 3 162.239 109.189 141.543 1 73.13 ? S02 F9M 1201 B 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    85 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           39 
#