data_8JVL # _model_server_result.job_id DhDgNzAhq2rn1Rxi8GzZlA _model_server_result.datetime_utc '2024-12-22 04:01:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jvl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8JVL # _exptl.entry_id 8JVL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JVL _cell.length_a 54.89 _cell.length_b 54.89 _cell.length_c 184.074 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JVL _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8JVL _atom_sites.fract_transf_matrix[1][1] 0.018218 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V5L A 1 201 201 V5L 900 . C 3 EDO A 1 202 1 EDO EDO . D 4 HOH A 1 301 89 HOH HOH . D 4 HOH A 2 302 44 HOH HOH . D 4 HOH A 3 303 36 HOH HOH . D 4 HOH A 4 304 70 HOH HOH . D 4 HOH A 5 305 28 HOH HOH . D 4 HOH A 6 306 35 HOH HOH . D 4 HOH A 7 307 54 HOH HOH . D 4 HOH A 8 308 24 HOH HOH . D 4 HOH A 9 309 25 HOH HOH . D 4 HOH A 10 310 71 HOH HOH . D 4 HOH A 11 311 42 HOH HOH . D 4 HOH A 12 312 90 HOH HOH . D 4 HOH A 13 313 60 HOH HOH . D 4 HOH A 14 314 20 HOH HOH . D 4 HOH A 15 315 8 HOH HOH . D 4 HOH A 16 316 33 HOH HOH . D 4 HOH A 17 317 55 HOH HOH . D 4 HOH A 18 318 12 HOH HOH . D 4 HOH A 19 319 21 HOH HOH . D 4 HOH A 20 320 27 HOH HOH . D 4 HOH A 21 321 7 HOH HOH . D 4 HOH A 22 322 76 HOH HOH . D 4 HOH A 23 323 5 HOH HOH . D 4 HOH A 24 324 74 HOH HOH . D 4 HOH A 25 325 29 HOH HOH . D 4 HOH A 26 326 48 HOH HOH . D 4 HOH A 27 327 73 HOH HOH . D 4 HOH A 28 328 10 HOH HOH . D 4 HOH A 29 329 92 HOH HOH . D 4 HOH A 30 330 2 HOH HOH . D 4 HOH A 31 331 56 HOH HOH . D 4 HOH A 32 332 67 HOH HOH . D 4 HOH A 33 333 14 HOH HOH . D 4 HOH A 34 334 43 HOH HOH . D 4 HOH A 35 335 59 HOH HOH . D 4 HOH A 36 336 19 HOH HOH . D 4 HOH A 37 337 86 HOH HOH . D 4 HOH A 38 338 34 HOH HOH . D 4 HOH A 39 339 11 HOH HOH . D 4 HOH A 40 340 39 HOH HOH . D 4 HOH A 41 341 4 HOH HOH . D 4 HOH A 42 342 3 HOH HOH . D 4 HOH A 43 343 38 HOH HOH . D 4 HOH A 44 344 13 HOH HOH . D 4 HOH A 45 345 9 HOH HOH . D 4 HOH A 46 346 1 HOH HOH . D 4 HOH A 47 347 52 HOH HOH . D 4 HOH A 48 348 26 HOH HOH . D 4 HOH A 49 349 6 HOH HOH . D 4 HOH A 50 350 30 HOH HOH . D 4 HOH A 51 351 61 HOH HOH . D 4 HOH A 52 352 22 HOH HOH . D 4 HOH A 53 353 31 HOH HOH . D 4 HOH A 54 354 16 HOH HOH . D 4 HOH A 55 355 45 HOH HOH . D 4 HOH A 56 356 63 HOH HOH . D 4 HOH A 57 357 91 HOH HOH . D 4 HOH A 58 358 66 HOH HOH . D 4 HOH A 59 359 17 HOH HOH . D 4 HOH A 60 360 98 HOH HOH . D 4 HOH A 61 361 47 HOH HOH . D 4 HOH A 62 362 84 HOH HOH . D 4 HOH A 63 363 32 HOH HOH . D 4 HOH A 64 364 68 HOH HOH . D 4 HOH A 65 365 64 HOH HOH . D 4 HOH A 66 366 75 HOH HOH . D 4 HOH A 67 367 83 HOH HOH . D 4 HOH A 68 368 23 HOH HOH . D 4 HOH A 69 369 49 HOH HOH . D 4 HOH A 70 370 72 HOH HOH . D 4 HOH A 71 371 62 HOH HOH . D 4 HOH A 72 372 18 HOH HOH . D 4 HOH A 73 373 95 HOH HOH . D 4 HOH A 74 374 81 HOH HOH . D 4 HOH A 75 375 69 HOH HOH . D 4 HOH A 76 376 37 HOH HOH . D 4 HOH A 77 377 101 HOH HOH . D 4 HOH A 78 378 94 HOH HOH . D 4 HOH A 79 379 51 HOH HOH . D 4 HOH A 80 380 82 HOH HOH . D 4 HOH A 81 381 85 HOH HOH . D 4 HOH A 82 382 58 HOH HOH . D 4 HOH A 83 383 77 HOH HOH . D 4 HOH A 84 384 80 HOH HOH . D 4 HOH A 85 385 87 HOH HOH . D 4 HOH A 86 386 41 HOH HOH . D 4 HOH A 87 387 93 HOH HOH . D 4 HOH A 88 388 79 HOH HOH . D 4 HOH A 89 389 78 HOH HOH . D 4 HOH A 90 390 100 HOH HOH . D 4 HOH A 91 391 40 HOH HOH . D 4 HOH A 92 392 50 HOH HOH . D 4 HOH A 93 393 99 HOH HOH . D 4 HOH A 94 394 15 HOH HOH . D 4 HOH A 95 395 96 HOH HOH . D 4 HOH A 96 396 53 HOH HOH . D 4 HOH A 97 397 103 HOH HOH . D 4 HOH A 98 398 97 HOH HOH . D 4 HOH A 99 399 57 HOH HOH . D 4 HOH A 100 400 88 HOH HOH . D 4 HOH A 101 401 46 HOH HOH . D 4 HOH A 102 402 104 HOH HOH . D 4 HOH A 103 403 65 HOH HOH . D 4 HOH A 104 404 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . C 3 -20.635 -12.456 -6.25 1 51.24 ? C1 EDO 202 A 1 HETATM 2 O O1 EDO . . . C 3 -20.387 -11.048 -6.406 1 40.54 ? O1 EDO 202 A 1 HETATM 3 C C2 EDO . . . C 3 -20.545 -13.222 -7.574 1 40.78 ? C2 EDO 202 A 1 HETATM 4 O O2 EDO . . . C 3 -21.341 -12.585 -8.593 1 44.22 ? O2 EDO 202 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #