data_8JVQ # _model_server_result.job_id C8VB4KcCxKSVS1I-fDPH-A _model_server_result.datetime_utc '2024-10-10 01:23:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jvq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 8JVQ # _exptl.entry_id 8JVQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8JVQ _cell.length_a 35.017 _cell.length_b 35.017 _cell.length_c 54.66 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JVQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 x-y,-y,-z+1/3 1 0 0 0 -1 0 0 0 -1 0 0 18.22 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 54 n n C1 O2 CIT sing 55 n n C1 C2 CIT sing 56 n n O2 HO2 CIT sing 57 n n C2 C3 CIT sing 58 n n C2 H21 CIT sing 59 n n C2 H22 CIT sing 60 n n C3 O7 CIT sing 61 n n C3 C4 CIT sing 62 n n C3 C6 CIT sing 63 n n O7 HO7 CIT sing 64 n n C4 C5 CIT sing 65 n n C4 H41 CIT sing 66 n n C4 H42 CIT sing 67 n n C5 O3 CIT doub 68 n n C5 O4 CIT sing 69 n n O4 HO4 CIT sing 70 n n C6 O5 CIT doub 71 n n C6 O6 CIT sing 72 n n O6 HO6 CIT sing 73 n n # _atom_sites.entry_id 8JVQ _atom_sites.fract_transf_matrix[1][1] 0.028558 _atom_sites.fract_transf_matrix[1][2] 0.016488 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.032975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018295 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 101 1 SO4 SO4 . C 3 CIT A 1 102 101 CIT CIT . D 4 HOH A 1 201 25 HOH HOH . D 4 HOH A 2 202 33 HOH HOH . D 4 HOH A 3 203 8 HOH HOH . D 4 HOH A 4 204 34 HOH HOH . D 4 HOH A 5 205 10 HOH HOH . D 4 HOH A 6 206 3 HOH HOH . D 4 HOH A 7 207 39 HOH HOH . D 4 HOH A 8 208 35 HOH HOH . D 4 HOH A 9 209 12 HOH HOH . D 4 HOH A 10 210 36 HOH HOH . D 4 HOH A 11 211 31 HOH HOH . D 4 HOH A 12 212 6 HOH HOH . D 4 HOH A 13 213 14 HOH HOH . D 4 HOH A 14 214 2 HOH HOH . D 4 HOH A 15 215 15 HOH HOH . D 4 HOH A 16 216 26 HOH HOH . D 4 HOH A 17 217 4 HOH HOH . D 4 HOH A 18 218 22 HOH HOH . D 4 HOH A 19 219 1 HOH HOH . D 4 HOH A 20 220 17 HOH HOH . D 4 HOH A 21 221 5 HOH HOH . D 4 HOH A 22 222 19 HOH HOH . D 4 HOH A 23 223 7 HOH HOH . D 4 HOH A 24 224 23 HOH HOH . D 4 HOH A 25 225 11 HOH HOH . D 4 HOH A 26 226 38 HOH HOH . D 4 HOH A 27 227 40 HOH HOH . D 4 HOH A 28 228 32 HOH HOH . D 4 HOH A 29 229 28 HOH HOH . D 4 HOH A 30 230 37 HOH HOH . D 4 HOH A 31 231 27 HOH HOH . D 4 HOH A 32 232 13 HOH HOH . D 4 HOH A 33 233 30 HOH HOH . D 4 HOH A 34 234 18 HOH HOH . D 4 HOH A 35 235 21 HOH HOH . D 4 HOH A 36 236 20 HOH HOH . D 4 HOH A 37 237 29 HOH HOH . D 4 HOH A 38 238 16 HOH HOH . D 4 HOH A 39 239 9 HOH HOH . D 4 HOH A 40 240 42 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . C 3 5.179 -10.424 -0.705 1 67.04 ? C1 CIT 102 A 1 HETATM 2 O O1 CIT . . . C 3 5.305 -9.499 -1.507 1 69.25 ? O1 CIT 102 A 1 HETATM 3 O O2 CIT . . . C 3 6.093 -11.105 -0.422 1 62.42 ? O2 CIT 102 A 1 HETATM 4 C C2 CIT . . . C 3 3.797 -10.792 -0.169 1 65.76 ? C2 CIT 102 A 1 HETATM 5 C C3 CIT . . . C 3 2.861 -9.694 0.35 1 64.04 ? C3 CIT 102 A 1 HETATM 6 O O7 CIT . . . C 3 1.529 -10.014 0.013 1 62.93 ? O7 CIT 102 A 1 HETATM 7 C C4 CIT . . . C 3 2.988 -9.62 1.872 1 56.17 ? C4 CIT 102 A 1 HETATM 8 C C5 CIT . . . C 3 1.666 -9.679 2.622 1 56.44 ? C5 CIT 102 A 1 HETATM 9 O O3 CIT . . . C 3 0.733 -9.915 1.921 1 58.62 ? O3 CIT 102 A 1 HETATM 10 O O4 CIT . . . C 3 1.57 -9.46 3.851 1 52.33 ? O4 CIT 102 A 1 HETATM 11 C C6 CIT . . . C 3 3.23 -8.345 -0.289 1 72.93 ? C6 CIT 102 A 1 HETATM 12 O O5 CIT . . . C 3 3.134 -8.216 -1.495 1 74.99 ? O5 CIT 102 A 1 HETATM 13 O O6 CIT . . . C 3 3.629 -7.489 0.447 1 77.03 ? O6 CIT 102 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #