data_8JVW # _model_server_result.job_id zMG_uNl2yB9gljlUcwXIig _model_server_result.datetime_utc '2024-10-10 07:24:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jvw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 8JVW # _exptl.entry_id 8JVW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 75.067 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCINE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8JVW _cell.length_a 23.959 _cell.length_b 44.427 _cell.length_c 84.289 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JVW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N # _chem_comp.formula 'C2 H5 N O2' _chem_comp.formula_weight 75.067 _chem_comp.id GLY _chem_comp.mon_nstd_flag y _chem_comp.name GLYCINE _chem_comp.type 'peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA GLY sing 72 n n N H GLY sing 73 n n N H2 GLY sing 74 n n CA C GLY sing 75 n n CA HA2 GLY sing 76 n n CA HA3 GLY sing 77 n n C O GLY doub 78 n n C OXT GLY sing 79 n n OXT HXT GLY sing 80 n n # _atom_sites.entry_id 8JVW _atom_sites.fract_transf_matrix[1][1] 0.041738 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022509 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011864 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GLY A 1 101 106 GLY GLY . C 2 GLY A 1 102 206 GLY GLY . D 2 GLY A 1 103 306 GLY GLY . E 3 HOH A 1 201 4 HOH HOH . E 3 HOH A 2 202 6 HOH HOH . E 3 HOH A 3 203 1 HOH HOH . E 3 HOH A 4 204 12 HOH HOH . E 3 HOH A 5 205 14 HOH HOH . E 3 HOH A 6 206 10 HOH HOH . E 3 HOH A 7 207 5 HOH HOH . E 3 HOH A 8 208 2 HOH HOH . E 3 HOH A 9 209 20 HOH HOH . E 3 HOH A 10 210 7 HOH HOH . E 3 HOH A 11 211 18 HOH HOH . E 3 HOH A 12 212 24 HOH HOH . E 3 HOH A 13 213 8 HOH HOH . E 3 HOH A 14 214 11 HOH HOH . E 3 HOH A 15 215 9 HOH HOH . E 3 HOH A 16 216 21 HOH HOH . E 3 HOH A 17 217 23 HOH HOH . E 3 HOH A 18 218 16 HOH HOH . E 3 HOH A 19 219 19 HOH HOH . E 3 HOH A 20 220 3 HOH HOH . E 3 HOH A 21 221 17 HOH HOH . E 3 HOH A 22 222 25 HOH HOH . E 3 HOH A 23 223 15 HOH HOH . E 3 HOH A 24 224 22 HOH HOH . E 3 HOH A 25 225 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N GLY . . . C 2 4.178 16.332 33.029 1 88.77 ? N GLY 102 A 1 HETATM 2 C CA GLY . . . C 2 5.193 15.282 33.215 1 102.3 ? CA GLY 102 A 1 HETATM 3 C C GLY . . . C 2 5.705 14.769 31.89 1 124.04 ? C GLY 102 A 1 HETATM 4 O O GLY . . . C 2 4.867 14.489 31.044 1 158.08 ? O GLY 102 A 1 HETATM 5 O OXT GLY . . . C 2 6.892 14.659 31.723 1 120.55 ? OXT GLY 102 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #