data_8JXU
#
_model_server_result.job_id            nOdi8vL-Q1w3M-wkSskP9Q 
_model_server_result.datetime_utc      '2025-02-05 09:51:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jxu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1602}' 
#
_entry.id    8JXU 
#
_exptl.entry_id    8JXU 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8JXU 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JXU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A OE1 GLN 706 A GLN 706 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.829 ? 
metalc ? metalc2 C O1G ATP . A ATP 1602 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? 
metalc ? metalc3 C O2G ATP . A ATP 1602 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? 
metalc ? metalc4 C O1B ATP . A ATP 1602 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? 
metalc ? metalc5 C O2B ATP . A ATP 1602 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.868 ? 
metalc ? metalc6 C O3B ATP . A ATP 1602 1_555 D MG MG . A MG 1603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 114 n n 
PG O2G ATP sing 115 n n 
PG O3G ATP sing 116 n n 
PG O3B ATP sing 117 n n 
O2G HOG2 ATP sing 118 n n 
O3G HOG3 ATP sing 119 n n 
PB O1B ATP doub 120 n n 
PB O2B ATP sing 121 n n 
PB O3B ATP sing 122 n n 
PB O3A ATP sing 123 n n 
O2B HOB2 ATP sing 124 n n 
PA O1A ATP doub 125 n n 
PA O2A ATP sing 126 n n 
PA O3A ATP sing 127 n n 
PA O5' ATP sing 128 n n 
O2A HOA2 ATP sing 129 n n 
O5' C5' ATP sing 130 n n 
C5' C4' ATP sing 131 n n 
C5' "H5'1" ATP sing 132 n n 
C5' "H5'2" ATP sing 133 n n 
C4' O4' ATP sing 134 n n 
C4' C3' ATP sing 135 n n 
C4' H4' ATP sing 136 n n 
O4' C1' ATP sing 137 n n 
C3' O3' ATP sing 138 n n 
C3' C2' ATP sing 139 n n 
C3' H3' ATP sing 140 n n 
O3' HO3' ATP sing 141 n n 
C2' O2' ATP sing 142 n n 
C2' C1' ATP sing 143 n n 
C2' H2' ATP sing 144 n n 
O2' HO2' ATP sing 145 n n 
C1' N9 ATP sing 146 n n 
C1' H1' ATP sing 147 n n 
N9 C8 ATP sing 148 n y 
N9 C4 ATP sing 149 n y 
C8 N7 ATP doub 150 n y 
C8 H8 ATP sing 151 n n 
N7 C5 ATP sing 152 n y 
C5 C6 ATP sing 153 n y 
C5 C4 ATP doub 154 n y 
C6 N6 ATP sing 155 n n 
C6 N1 ATP doub 156 n y 
N6 HN61 ATP sing 157 n n 
N6 HN62 ATP sing 158 n n 
N1 C2 ATP sing 159 n y 
C2 N3 ATP doub 160 n y 
C2 H2 ATP sing 161 n n 
N3 C4 ATP sing 162 n y 
#
_atom_sites.entry_id                     8JXU 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 1601 1601 ADP ADP . 
C 3 ATP A 1 1602 1602 ATP ATP . 
D 4 MG A 1 1603 1 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . C 3 124.217 102.806 77.036 1 119.19 ? PG ATP 1602 A 1 
HETATM 2 O O1G ATP . . . C 3 124.506 101.397 76.657 1 119.19 ? O1G ATP 1602 A 1 
HETATM 3 O O2G ATP . . . C 3 125.358 103.477 77.791 1 119.19 ? O2G ATP 1602 A 1 
HETATM 4 O O3G ATP . . . C 3 123.8 103.691 75.867 1 119.19 ? O3G ATP 1602 A 1 
HETATM 5 P PB ATP . . . C 3 122.625 102.446 79.499 1 119.19 ? PB ATP 1602 A 1 
HETATM 6 O O1B ATP . . . C 3 122.646 100.986 79.664 1 119.19 ? O1B ATP 1602 A 1 
HETATM 7 O O2B ATP . . . C 3 123.539 103.228 80.433 1 119.19 ? O2B ATP 1602 A 1 
HETATM 8 O O3B ATP . . . C 3 122.993 102.868 78.037 1 119.19 ? O3B ATP 1602 A 1 
HETATM 9 P PA ATP . . . C 3 120.054 103.062 80.78 1 119.19 ? PA ATP 1602 A 1 
HETATM 10 O O1A ATP . . . C 3 119.79 101.705 81.299 1 119.19 ? O1A ATP 1602 A 1 
HETATM 11 O O2A ATP . . . C 3 120.5 104.083 81.818 1 119.19 ? O2A ATP 1602 A 1 
HETATM 12 O O3A ATP . . . C 3 121.159 103.036 79.659 1 119.19 ? O3A ATP 1602 A 1 
HETATM 13 O O5' ATP . . . C 3 118.799 103.644 80.024 1 119.19 ? O5' ATP 1602 A 1 
HETATM 14 C C5' ATP . . . C 3 118.805 104.982 79.488 1 119.19 ? C5' ATP 1602 A 1 
HETATM 15 C C4' ATP . . . C 3 117.401 105.511 79.542 1 119.19 ? C4' ATP 1602 A 1 
HETATM 16 O O4' ATP . . . C 3 117.084 105.686 80.94 1 119.19 ? O4' ATP 1602 A 1 
HETATM 17 C C3' ATP . . . C 3 117.336 106.923 78.977 1 119.19 ? C3' ATP 1602 A 1 
HETATM 18 O O3' ATP . . . C 3 115.952 107.226 78.871 1 119.19 ? O3' ATP 1602 A 1 
HETATM 19 C C2' ATP . . . C 3 117.845 107.746 80.152 1 119.19 ? C2' ATP 1602 A 1 
HETATM 20 O O2' ATP . . . C 3 117.215 109.013 80.044 1 119.19 ? O2' ATP 1602 A 1 
HETATM 21 C C1' ATP . . . C 3 117.103 107.057 81.291 1 119.19 ? C1' ATP 1602 A 1 
HETATM 22 N N9 ATP . . . C 3 117.844 107.159 82.538 1 119.19 ? N9 ATP 1602 A 1 
HETATM 23 C C8 ATP . . . C 3 119.014 106.527 82.861 1 119.19 ? C8 ATP 1602 A 1 
HETATM 24 N N7 ATP . . . C 3 119.463 106.81 84.059 1 119.19 ? N7 ATP 1602 A 1 
HETATM 25 C C5 ATP . . . C 3 118.522 107.697 84.559 1 119.19 ? C5 ATP 1602 A 1 
HETATM 26 C C6 ATP . . . C 3 118.413 108.374 85.788 1 119.19 ? C6 ATP 1602 A 1 
HETATM 27 N N6 ATP . . . C 3 119.3 108.26 86.781 1 119.19 ? N6 ATP 1602 A 1 
HETATM 28 N N1 ATP . . . C 3 117.349 109.184 85.966 1 119.19 ? N1 ATP 1602 A 1 
HETATM 29 C C2 ATP . . . C 3 116.459 109.303 84.978 1 119.19 ? C2 ATP 1602 A 1 
HETATM 30 N N3 ATP . . . C 3 116.456 108.715 83.78 1 119.19 ? N3 ATP 1602 A 1 
HETATM 31 C C4 ATP . . . C 3 117.52 107.922 83.631 1 119.19 ? C4 ATP 1602 A 1 
HETATM 32 H "H5'1" ATP . . . C 3 119.112 104.965 78.568 1 119.19 ? "H5'1" ATP 1602 A 1 
HETATM 33 H "H5'2" ATP . . . C 3 119.394 105.542 80.018 1 119.19 ? "H5'2" ATP 1602 A 1 
HETATM 34 H H4' ATP . . . C 3 116.782 104.916 79.092 1 119.19 ? H4' ATP 1602 A 1 
HETATM 35 H H3' ATP . . . C 3 117.832 107.049 78.153 1 119.19 ? H3' ATP 1602 A 1 
HETATM 36 H HO3' ATP . . . C 3 115.89 107.915 78.376 1 119.19 ? HO3' ATP 1602 A 1 
HETATM 37 H H2' ATP . . . C 3 118.81 107.78 80.246 1 119.19 ? H2' ATP 1602 A 1 
HETATM 38 H HO2' ATP . . . C 3 117.717 109.495 79.555 1 119.19 ? HO2' ATP 1602 A 1 
HETATM 39 H H1' ATP . . . C 3 116.207 107.415 81.391 1 119.19 ? H1' ATP 1602 A 1 
HETATM 40 H H8 ATP . . . C 3 119.451 105.946 82.281 1 119.19 ? H8 ATP 1602 A 1 
HETATM 41 H HN61 ATP . . . C 3 120.01 107.787 86.673 1 119.19 ? HN61 ATP 1602 A 1 
HETATM 42 H HN62 ATP . . . C 3 119.161 108.661 87.529 1 119.19 ? HN62 ATP 1602 A 1 
HETATM 43 H H2 ATP . . . C 3 115.744 109.872 85.148 1 119.19 ? H2 ATP 1602 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#