data_8JXV
#
_model_server_result.job_id            IGb7RExeGDTQeiWCPtOE5g 
_model_server_result.datetime_utc      '2024-10-11 00:27:27' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jxv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8JXV 
#
_exptl.entry_id    8JXV 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              326.823 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-chloranyl-6-(4-methylpiperazin-1-yl)-11~{H}-benzo[b][1,4]benzodiazepine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 159 E CYS 160 1_555 D SG CYS 229 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 E SG CYS 87 R CYS 87 1_555 E SG CYS 164 R CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C18 H19 Cl N4' 
_chem_comp.formula_weight    326.823 
_chem_comp.id                VBU 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-chloranyl-6-(4-methylpiperazin-1-yl)-11~{H}-benzo[b][1,4]benzodiazepine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Clozapine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C22 VBU sing 374 n n 
C22 C19 VBU doub 375 n y 
C22 C23 VBU sing 376 n y 
C19 C14 VBU sing 377 n y 
C06 C08 VBU sing 378 n n 
C06 N02 VBU sing 379 n n 
C08 N03 VBU sing 380 n n 
C23 C21 VBU doub 381 n y 
C14 N04 VBU sing 382 n n 
C14 C15 VBU doub 383 n y 
N04 C10 VBU doub 384 n n 
C12 N03 VBU sing 385 n n 
N03 C09 VBU sing 386 n n 
C21 C15 VBU sing 387 n y 
N02 C10 VBU sing 388 n n 
N02 C07 VBU sing 389 n n 
C15 N05 VBU sing 390 n n 
C10 C11 VBU sing 391 n n 
C09 C07 VBU sing 392 n n 
N05 C13 VBU sing 393 n n 
C11 C13 VBU doub 394 n y 
C11 C16 VBU sing 395 n y 
C13 C17 VBU sing 396 n y 
C16 C18 VBU doub 397 n y 
C17 C20 VBU doub 398 n y 
C18 C20 VBU sing 399 n y 
C06 H1 VBU sing 400 n n 
C06 H2 VBU sing 401 n n 
C07 H3 VBU sing 402 n n 
C07 H4 VBU sing 403 n n 
C08 H5 VBU sing 404 n n 
C08 H6 VBU sing 405 n n 
C09 H7 VBU sing 406 n n 
C09 H8 VBU sing 407 n n 
C12 H9 VBU sing 408 n n 
C12 H10 VBU sing 409 n n 
C12 H11 VBU sing 410 n n 
C16 H12 VBU sing 411 n n 
C17 H13 VBU sing 412 n n 
C18 H14 VBU sing 413 n n 
C19 H15 VBU sing 414 n n 
C20 H16 VBU sing 415 n n 
C21 H17 VBU sing 416 n n 
C23 H18 VBU sing 417 n n 
N05 H20 VBU sing 418 n n 
#
_atom_sites.entry_id                     8JXV 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           VBU 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       VBU 
_pdbx_nonpoly_scheme.auth_mon_id      CLO 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C06 VBU . . . F 6 140.781 146.45 166.252 1 30.06 ? C06 VBU 401 R 1 
HETATM 2 C C07 VBU . . . F 6 141.158 146.72 168.746 1 30.06 ? C07 VBU 401 R 1 
HETATM 3 C C08 VBU . . . F 6 142.313 146.28 166.262 1 30.06 ? C08 VBU 401 R 1 
HETATM 4 C C09 VBU . . . F 6 142.613 146.3 168.466 1 30.06 ? C09 VBU 401 R 1 
HETATM 5 C C10 VBU . . . F 6 138.537 146.228 167.888 1 30.06 ? C10 VBU 401 R 1 
HETATM 6 C C11 VBU . . . F 6 138.084 146.28 169.447 1 30.06 ? C11 VBU 401 R 1 
HETATM 7 C C12 VBU . . . F 6 144.134 145.148 167.183 1 30.06 ? C12 VBU 401 R 1 
HETATM 8 C C13 VBU . . . F 6 137.055 145.346 169.789 1 30.06 ? C13 VBU 401 R 1 
HETATM 9 C C14 VBU . . . F 6 136.286 145.762 166.718 1 30.06 ? C14 VBU 401 R 1 
HETATM 10 C C15 VBU . . . F 6 135.656 144.964 167.705 1 30.06 ? C15 VBU 401 R 1 
HETATM 11 C C16 VBU . . . F 6 138.534 147.113 170.519 1 30.06 ? C16 VBU 401 R 1 
HETATM 12 C C17 VBU . . . F 6 136.573 145.338 171.148 1 30.06 ? C17 VBU 401 R 1 
HETATM 13 C C18 VBU . . . F 6 138.063 147.067 171.843 1 30.06 ? C18 VBU 401 R 1 
HETATM 14 C C19 VBU . . . F 6 135.428 146.249 165.663 1 30.06 ? C19 VBU 401 R 1 
HETATM 15 C C20 VBU . . . F 6 137.065 146.165 172.158 1 30.06 ? C20 VBU 401 R 1 
HETATM 16 C C21 VBU . . . F 6 134.236 144.723 167.603 1 30.06 ? C21 VBU 401 R 1 
HETATM 17 C C22 VBU . . . F 6 134.066 145.975 165.602 1 30.06 ? C22 VBU 401 R 1 
HETATM 18 C C23 VBU . . . F 6 133.447 145.211 166.577 1 30.06 ? C23 VBU 401 R 1 
HETATM 19 N N02 VBU . . . F 6 140.119 146.458 167.636 1 30.06 ? N02 VBU 401 R 1 
HETATM 20 N N03 VBU . . . F 6 142.718 145.4 167.345 1 30.06 ? N03 VBU 401 R 1 
HETATM 21 N N04 VBU . . . F 6 137.738 146.004 166.883 1 30.06 ? N04 VBU 401 R 1 
HETATM 22 N N05 VBU . . . F 6 136.508 144.499 168.763 1 30.06 ? N05 VBU 401 R 1 
HETATM 23 CL CL1 VBU . . . F 6 133.023 146.602 164.269 1 30.06 ? CL1 VBU 401 R 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           23 
#