data_8JXX
#
_model_server_result.job_id            wE1SXr9cAaO63anZTXbXLg 
_model_server_result.datetime_utc      '2024-10-11 00:29:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jxx 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":401}' 
#
_entry.id    8JXX 
#
_exptl.entry_id    8JXX 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              308.83 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "3-(1~{H}-imidazol-4-yl)propyl ~{N}'-[(4-chlorophenyl)methyl]carbamimidothioate" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      6 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 87 R CYS 87 1_555 A SG CYS 164 R CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf2 E SG CYS 159 E CYS 160 1_555 E SG CYS 229 E CYS 230 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
#
_chem_comp.formula           'C14 H17 Cl N4 S' 
_chem_comp.formula_weight    308.83 
_chem_comp.id                VCL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "3-(1~{H}-imidazol-4-yl)propyl ~{N}'-[(4-chlorophenyl)methyl]carbamimidothioate" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     Clobenpropit 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C03 VCL sing 374 n n 
C03 C02 VCL doub 375 n y 
C03 C04 VCL sing 376 n y 
C02 C01 VCL sing 377 n y 
C04 C05 VCL doub 378 n y 
C01 C06 VCL doub 379 n y 
C05 C06 VCL sing 380 n y 
C06 C07 VCL sing 381 n n 
C18 N19 VCL doub 382 n y 
C18 N17 VCL sing 383 n y 
N19 C15 VCL sing 384 n y 
N17 C16 VCL sing 385 n y 
C07 N08 VCL sing 386 n n 
C15 C16 VCL doub 387 n y 
C15 C14 VCL sing 388 n n 
S11 C12 VCL sing 389 n n 
S11 C09 VCL sing 390 n n 
N08 C09 VCL doub 391 n n 
C13 C14 VCL sing 392 n n 
C13 C12 VCL sing 393 n n 
C09 N10 VCL sing 394 n n 
C16 H1 VCL sing 395 n n 
C18 H2 VCL sing 396 n n 
C01 H3 VCL sing 397 n n 
C02 H4 VCL sing 398 n n 
C04 H5 VCL sing 399 n n 
C05 H6 VCL sing 400 n n 
C07 H7 VCL sing 401 n n 
C07 H8 VCL sing 402 n n 
N10 H10 VCL sing 403 n n 
C12 H11 VCL sing 404 n n 
C12 H12 VCL sing 405 n n 
C13 H13 VCL sing 406 n n 
C13 H14 VCL sing 407 n n 
C14 H15 VCL sing 408 n n 
C14 H16 VCL sing 409 n n 
N17 H17 VCL sing 410 n n 
N10 H9 VCL sing 411 n n 
#
_atom_sites.entry_id                     8JXX 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          F 
_pdbx_nonpoly_scheme.entity_id        6 
_pdbx_nonpoly_scheme.mon_id           VCL 
_pdbx_nonpoly_scheme.pdb_strand_id    R 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      401 
_pdbx_nonpoly_scheme.auth_seq_num     401 
_pdbx_nonpoly_scheme.pdb_mon_id       VCL 
_pdbx_nonpoly_scheme.auth_mon_id      CBP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 VCL . . . F 6 137.451 146.006 110.198 1 86.36 ? C15 VCL 401 R 1 
HETATM 2 C C16 VCL . . . F 6 136.818 146.804 111.104 1 86.36 ? C16 VCL 401 R 1 
HETATM 3 C C18 VCL . . . F 6 135.259 145.653 109.998 1 86.36 ? C18 VCL 401 R 1 
HETATM 4 CL CL1 VCL . . . F 6 144.651 146.817 104.222 1 86.36 ? CL1 VCL 401 R 1 
HETATM 5 C C01 VCL . . . F 6 142.445 145.316 107.202 1 86.36 ? C01 VCL 401 R 1 
HETATM 6 C C02 VCL . . . F 6 142.838 145.803 105.961 1 86.36 ? C02 VCL 401 R 1 
HETATM 7 C C03 VCL . . . F 6 144.167 146.165 105.749 1 86.36 ? C03 VCL 401 R 1 
HETATM 8 C C04 VCL . . . F 6 145.105 146.01 106.767 1 86.36 ? C04 VCL 401 R 1 
HETATM 9 C C05 VCL . . . F 6 144.71 145.514 108.004 1 86.36 ? C05 VCL 401 R 1 
HETATM 10 C C06 VCL . . . F 6 143.37 145.186 108.244 1 86.36 ? C06 VCL 401 R 1 
HETATM 11 C C07 VCL . . . F 6 142.912 144.651 109.596 1 86.36 ? C07 VCL 401 R 1 
HETATM 12 N N08 VCL . . . F 6 143.581 145.446 110.62 1 86.36 ? N08 VCL 401 R 1 
HETATM 13 C C09 VCL . . . F 6 143.054 146.216 111.557 1 86.36 ? C09 VCL 401 R 1 
HETATM 14 N N10 VCL . . . F 6 143.749 146.282 112.66 1 86.36 1 N10 VCL 401 R 1 
HETATM 15 S S11 VCL . . . F 6 141.575 147.078 111.475 1 86.36 ? S11 VCL 401 R 1 
HETATM 16 C C12 VCL . . . F 6 141.075 147.447 109.758 1 86.36 ? C12 VCL 401 R 1 
HETATM 17 C C13 VCL . . . F 6 139.541 147.391 109.763 1 86.36 ? C13 VCL 401 R 1 
HETATM 18 C C14 VCL . . . F 6 138.942 145.981 109.965 1 86.36 ? C14 VCL 401 R 1 
HETATM 19 N N17 VCL . . . F 6 135.476 146.579 110.937 1 86.36 ? N17 VCL 401 R 1 
HETATM 20 N N19 VCL . . . F 6 136.469 145.283 109.531 1 86.36 1 N19 VCL 401 R 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           20 
#