data_8JYD
#
_model_server_result.job_id            5hsmBKsfbVOHxDkAF4TdSg 
_model_server_result.datetime_utc      '2024-12-24 17:20:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8jyd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8JYD 
#
_exptl.entry_id    8JYD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              335.227 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8JYD 
_cell.length_a            92.48 
_cell.length_b            92.48 
_cell.length_c            74.29 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8JYD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H16 N2 O8 P 1' 
_chem_comp.formula_weight    335.227 
_chem_comp.id                NMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'NICOTINAMIDE MONONUCLEOTIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O3P P NMN doub 237 n n 
P O1P NMN sing 238 n n 
P O2P NMN sing 239 n n 
P O5R NMN sing 240 n n 
O1P H1PO NMN sing 241 n n 
O2P H2PO NMN sing 242 n n 
O5R C5R NMN sing 243 n n 
C5R C4R NMN sing 244 n n 
C5R H5R1 NMN sing 245 n n 
C5R H5R2 NMN sing 246 n n 
C4R O4R NMN sing 247 n n 
C4R C3R NMN sing 248 n n 
C4R H4RC NMN sing 249 n n 
O4R C1R NMN sing 250 n n 
C3R O3R NMN sing 251 n n 
C3R C2R NMN sing 252 n n 
C3R H3RC NMN sing 253 n n 
O3R H3RO NMN sing 254 n n 
C2R O2R NMN sing 255 n n 
C2R C1R NMN sing 256 n n 
C2R H2RC NMN sing 257 n n 
O2R H2RO NMN sing 258 n n 
C1R N1 NMN sing 259 n n 
C1R H1RC NMN sing 260 n n 
N1 C2 NMN doub 261 n y 
N1 C6 NMN sing 262 n y 
C2 C3 NMN sing 263 n y 
C2 HC2 NMN sing 264 n n 
C3 C7 NMN sing 265 n n 
C3 C4 NMN doub 266 n y 
C7 O7 NMN doub 267 n n 
C7 N7 NMN sing 268 n n 
N7 HN71 NMN sing 269 n n 
N7 HN72 NMN sing 270 n n 
C4 C5 NMN sing 271 n y 
C4 HC4 NMN sing 272 n n 
C5 C6 NMN doub 273 n y 
C5 HC5 NMN sing 274 n n 
C6 HC6 NMN sing 275 n n 
#
_atom_sites.entry_id                     8JYD 
_atom_sites.fract_transf_matrix[1][1]    0.010813 
_atom_sites.fract_transf_matrix[1][2]    0.006243 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012486 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013461 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NMN A 1 401 401 NMN NMN . 
C 3 HOH A 1 501 5 HOH HOH . 
C 3 HOH A 2 502 3 HOH HOH . 
C 3 HOH A 3 503 4 HOH HOH . 
C 3 HOH A 4 504 1 HOH HOH . 
C 3 HOH A 5 505 2 HOH HOH . 
C 3 HOH A 6 506 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O3P NMN . . . B 2 36.447 -12.447 1.251 1 85.35 ? O3P NMN 401 A 1 
HETATM 2 P P NMN . . . B 2 37.89 -12.559 1.775 1 84.03 ? P NMN 401 A 1 
HETATM 3 O O1P NMN . . . B 2 38.491 -13.935 1.574 1 82.61 ? O1P NMN 401 A 1 
HETATM 4 O O2P NMN . . . B 2 38.021 -12.114 3.218 1 84.64 ? O2P NMN 401 A 1 
HETATM 5 O O5R NMN . . . B 2 38.77 -11.529 0.87 1 81.9 ? O5R NMN 401 A 1 
HETATM 6 C C5R NMN . . . B 2 38.347 -11.225 -0.494 1 83.4 ? C5R NMN 401 A 1 
HETATM 7 C C4R NMN . . . B 2 38.792 -9.836 -0.893 1 84.71 ? C4R NMN 401 A 1 
HETATM 8 O O4R NMN . . . B 2 40.224 -9.689 -0.731 1 85.91 ? O4R NMN 401 A 1 
HETATM 9 C C3R NMN . . . B 2 38.539 -9.476 -2.363 1 84.55 ? C3R NMN 401 A 1 
HETATM 10 O O3R NMN . . . B 2 37.219 -8.999 -2.568 1 83.94 ? O3R NMN 401 A 1 
HETATM 11 C C2R NMN . . . B 2 39.582 -8.382 -2.614 1 85.88 ? C2R NMN 401 A 1 
HETATM 12 O O2R NMN . . . B 2 39.185 -7.114 -2.118 1 83.91 ? O2R NMN 401 A 1 
HETATM 13 C C1R NMN . . . B 2 40.772 -8.921 -1.811 1 86.85 ? C1R NMN 401 A 1 
HETATM 14 N N1 NMN . . . B 2 41.678 -9.786 -2.611 1 84.71 ? N1 NMN 401 A 1 
HETATM 15 C C2 NMN . . . B 2 42.55 -9.24 -3.541 1 86.38 ? C2 NMN 401 A 1 
HETATM 16 C C3 NMN . . . B 2 43.409 -10.059 -4.287 1 87.31 ? C3 NMN 401 A 1 
HETATM 17 C C7 NMN . . . B 2 44.355 -9.512 -5.328 1 85.43 ? C7 NMN 401 A 1 
HETATM 18 O O7 NMN . . . B 2 44.099 -8.415 -5.86 1 87.72 ? O7 NMN 401 A 1 
HETATM 19 N N7 NMN . . . B 2 45.417 -10.229 -5.697 1 79.84 ? N7 NMN 401 A 1 
HETATM 20 C C4 NMN . . . B 2 43.356 -11.431 -4.089 1 88.11 ? C4 NMN 401 A 1 
HETATM 21 C C5 NMN . . . B 2 42.478 -11.964 -3.161 1 85.62 ? C5 NMN 401 A 1 
HETATM 22 C C6 NMN . . . B 2 41.646 -11.144 -2.432 1 82.97 ? C6 NMN 401 A 1 
#
_model_server_stats.io_time_ms              50 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#