data_8JYG # _model_server_result.job_id 0BPG1iz8qUvjMHS6a7pSaw _model_server_result.datetime_utc '2024-11-07 07:28:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8jyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":624}' # _entry.id 8JYG # _exptl.entry_id 8JYG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 22 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.09 _cell.angle_gamma 90 _cell.entry_id 8JYG _cell.length_a 44.38 _cell.length_b 71.049 _cell.length_c 78.28 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8JYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 U N N ? 4 V N N ? 4 W N N ? 4 X N N ? 4 Y N N ? 4 Z N N ? 4 AA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 280 A CYS 437 1_555 A SG CYS 385 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? covale ? covale1 A ND2 ASN 81 A ASN 238 1_555 S C1 NAG . A NAG 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale2 A ND2 ASN 302 A ASN 459 1_555 T C1 NAG . A NAG 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8JYG _atom_sites.fract_transf_matrix[1][1] 0.022533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003203 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012903 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V8R A 1 601 1543 V8R inh . D 4 EDO A 1 602 1544 EDO EDO . E 4 EDO A 1 603 1545 EDO EDO . F 4 EDO A 1 604 1546 EDO EDO . G 4 EDO A 1 605 1547 EDO EDO . H 4 EDO A 1 606 1548 EDO EDO . I 4 EDO A 1 607 1549 EDO EDO . J 4 EDO A 1 608 1550 EDO EDO . K 4 EDO A 1 609 1551 EDO EDO . L 4 EDO A 1 610 1552 EDO EDO . M 4 EDO A 1 611 1553 EDO EDO . N 4 EDO A 1 612 1554 EDO EDO . O 4 EDO A 1 613 1555 EDO EDO . P 4 EDO A 1 614 1556 EDO EDO . Q 4 EDO A 1 615 1557 EDO EDO . R 4 EDO A 1 616 1558 EDO EDO . S 5 NAG A 1 617 1559 NAG NAG . T 5 NAG A 1 618 1560 NAG NAG . U 4 EDO A 1 619 1561 EDO EDO . V 4 EDO A 1 620 1562 EDO EDO . W 4 EDO A 1 621 1563 EDO EDO . X 4 EDO A 1 622 1564 EDO EDO . Y 4 EDO A 1 623 1109 EDO EDO . Z 4 EDO A 1 624 1110 EDO EDO . AA 4 EDO A 1 625 1111 EDO EDO . BA 6 HOH A 1 701 1735 HOH HOH . BA 6 HOH A 2 702 1673 HOH HOH . BA 6 HOH A 3 703 1760 HOH HOH . BA 6 HOH A 4 704 1722 HOH HOH . BA 6 HOH A 5 705 1766 HOH HOH . BA 6 HOH A 6 706 1797 HOH HOH . BA 6 HOH A 7 707 1761 HOH HOH . BA 6 HOH A 8 708 1793 HOH HOH . BA 6 HOH A 9 709 1799 HOH HOH . BA 6 HOH A 10 710 1819 HOH HOH . BA 6 HOH A 11 711 1697 HOH HOH . BA 6 HOH A 12 712 1824 HOH HOH . BA 6 HOH A 13 713 1741 HOH HOH . BA 6 HOH A 14 714 1813 HOH HOH . BA 6 HOH A 15 715 1684 HOH HOH . BA 6 HOH A 16 716 1665 HOH HOH . BA 6 HOH A 17 717 1682 HOH HOH . BA 6 HOH A 18 718 1702 HOH HOH . BA 6 HOH A 19 719 1740 HOH HOH . BA 6 HOH A 20 720 1742 HOH HOH . BA 6 HOH A 21 721 1691 HOH HOH . BA 6 HOH A 22 722 1736 HOH HOH . BA 6 HOH A 23 723 1835 HOH HOH . BA 6 HOH A 24 724 1757 HOH HOH . BA 6 HOH A 25 725 1711 HOH HOH . BA 6 HOH A 26 726 1751 HOH HOH . BA 6 HOH A 27 727 1759 HOH HOH . BA 6 HOH A 28 728 1700 HOH HOH . BA 6 HOH A 29 729 1814 HOH HOH . BA 6 HOH A 30 730 1695 HOH HOH . BA 6 HOH A 31 731 1789 HOH HOH . BA 6 HOH A 32 732 1803 HOH HOH . BA 6 HOH A 33 733 1779 HOH HOH . BA 6 HOH A 34 734 1694 HOH HOH . BA 6 HOH A 35 735 1681 HOH HOH . BA 6 HOH A 36 736 1728 HOH HOH . BA 6 HOH A 37 737 1666 HOH HOH . BA 6 HOH A 38 738 1729 HOH HOH . BA 6 HOH A 39 739 1778 HOH HOH . BA 6 HOH A 40 740 1738 HOH HOH . BA 6 HOH A 41 741 1747 HOH HOH . BA 6 HOH A 42 742 1704 HOH HOH . BA 6 HOH A 43 743 1756 HOH HOH . BA 6 HOH A 44 744 1805 HOH HOH . BA 6 HOH A 45 745 1213 HOH HOH . BA 6 HOH A 46 746 1754 HOH HOH . BA 6 HOH A 47 747 1715 HOH HOH . BA 6 HOH A 48 748 1708 HOH HOH . BA 6 HOH A 49 749 1680 HOH HOH . BA 6 HOH A 50 750 1713 HOH HOH . BA 6 HOH A 51 751 1820 HOH HOH . BA 6 HOH A 52 752 1674 HOH HOH . BA 6 HOH A 53 753 1693 HOH HOH . BA 6 HOH A 54 754 1769 HOH HOH . BA 6 HOH A 55 755 1667 HOH HOH . BA 6 HOH A 56 756 1671 HOH HOH . BA 6 HOH A 57 757 1787 HOH HOH . BA 6 HOH A 58 758 1838 HOH HOH . BA 6 HOH A 59 759 1776 HOH HOH . BA 6 HOH A 60 760 1775 HOH HOH . BA 6 HOH A 61 761 1734 HOH HOH . BA 6 HOH A 62 762 1806 HOH HOH . BA 6 HOH A 63 763 1727 HOH HOH . BA 6 HOH A 64 764 1705 HOH HOH . BA 6 HOH A 65 765 1817 HOH HOH . BA 6 HOH A 66 766 1717 HOH HOH . BA 6 HOH A 67 767 1770 HOH HOH . BA 6 HOH A 68 768 1828 HOH HOH . BA 6 HOH A 69 769 1795 HOH HOH . BA 6 HOH A 70 770 1767 HOH HOH . BA 6 HOH A 71 771 1685 HOH HOH . BA 6 HOH A 72 772 1669 HOH HOH . BA 6 HOH A 73 773 1839 HOH HOH . BA 6 HOH A 74 774 1703 HOH HOH . BA 6 HOH A 75 775 1706 HOH HOH . BA 6 HOH A 76 776 1690 HOH HOH . BA 6 HOH A 77 777 1683 HOH HOH . BA 6 HOH A 78 778 1796 HOH HOH . BA 6 HOH A 79 779 1785 HOH HOH . BA 6 HOH A 80 780 1815 HOH HOH . BA 6 HOH A 81 781 1726 HOH HOH . BA 6 HOH A 82 782 1678 HOH HOH . BA 6 HOH A 83 783 1837 HOH HOH . BA 6 HOH A 84 784 1687 HOH HOH . BA 6 HOH A 85 785 1686 HOH HOH . BA 6 HOH A 86 786 1677 HOH HOH . BA 6 HOH A 87 787 1832 HOH HOH . BA 6 HOH A 88 788 1675 HOH HOH . BA 6 HOH A 89 789 1834 HOH HOH . BA 6 HOH A 90 790 1801 HOH HOH . BA 6 HOH A 91 791 1829 HOH HOH . BA 6 HOH A 92 792 1816 HOH HOH . BA 6 HOH A 93 793 1821 HOH HOH . BA 6 HOH A 94 794 1720 HOH HOH . BA 6 HOH A 95 795 1750 HOH HOH . BA 6 HOH A 96 796 1783 HOH HOH . BA 6 HOH A 97 797 1725 HOH HOH . BA 6 HOH A 98 798 1707 HOH HOH . BA 6 HOH A 99 799 1825 HOH HOH . BA 6 HOH A 100 800 1712 HOH HOH . BA 6 HOH A 101 801 1743 HOH HOH . BA 6 HOH A 102 802 1733 HOH HOH . BA 6 HOH A 103 803 1833 HOH HOH . BA 6 HOH A 104 804 1764 HOH HOH . BA 6 HOH A 105 805 1826 HOH HOH . BA 6 HOH A 106 806 1781 HOH HOH . BA 6 HOH A 107 807 1701 HOH HOH . BA 6 HOH A 108 808 1746 HOH HOH . BA 6 HOH A 109 809 1818 HOH HOH . BA 6 HOH A 110 810 1696 HOH HOH . BA 6 HOH A 111 811 1709 HOH HOH . BA 6 HOH A 112 812 1786 HOH HOH . BA 6 HOH A 113 813 1716 HOH HOH . BA 6 HOH A 114 814 1676 HOH HOH . BA 6 HOH A 115 815 1773 HOH HOH . BA 6 HOH A 116 816 1721 HOH HOH . BA 6 HOH A 117 817 1802 HOH HOH . BA 6 HOH A 118 818 1784 HOH HOH . BA 6 HOH A 119 819 1790 HOH HOH . BA 6 HOH A 120 820 1211 HOH HOH . BA 6 HOH A 121 821 1670 HOH HOH . BA 6 HOH A 122 822 1792 HOH HOH . BA 6 HOH A 123 823 1222 HOH HOH . BA 6 HOH A 124 824 1731 HOH HOH . BA 6 HOH A 125 825 1698 HOH HOH . BA 6 HOH A 126 826 1771 HOH HOH . BA 6 HOH A 127 827 1744 HOH HOH . BA 6 HOH A 128 828 1718 HOH HOH . BA 6 HOH A 129 829 1774 HOH HOH . BA 6 HOH A 130 830 1782 HOH HOH . BA 6 HOH A 131 831 1800 HOH HOH . BA 6 HOH A 132 832 1689 HOH HOH . BA 6 HOH A 133 833 1823 HOH HOH . BA 6 HOH A 134 834 1798 HOH HOH . BA 6 HOH A 135 835 1719 HOH HOH . BA 6 HOH A 136 836 1692 HOH HOH . BA 6 HOH A 137 837 1804 HOH HOH . BA 6 HOH A 138 838 1672 HOH HOH . BA 6 HOH A 139 839 1809 HOH HOH . BA 6 HOH A 140 840 1730 HOH HOH . BA 6 HOH A 141 841 1768 HOH HOH . BA 6 HOH A 142 842 1732 HOH HOH . BA 6 HOH A 143 843 1664 HOH HOH . BA 6 HOH A 144 844 1749 HOH HOH . BA 6 HOH A 145 845 1724 HOH HOH . BA 6 HOH A 146 846 1714 HOH HOH . BA 6 HOH A 147 847 1748 HOH HOH . BA 6 HOH A 148 848 1737 HOH HOH . BA 6 HOH A 149 849 1772 HOH HOH . BA 6 HOH A 150 850 1679 HOH HOH . BA 6 HOH A 151 851 1811 HOH HOH . BA 6 HOH A 152 852 1688 HOH HOH . BA 6 HOH A 153 853 1830 HOH HOH . BA 6 HOH A 154 854 1765 HOH HOH . BA 6 HOH A 155 855 1794 HOH HOH . BA 6 HOH A 156 856 1763 HOH HOH . BA 6 HOH A 157 857 1699 HOH HOH . BA 6 HOH A 158 858 1668 HOH HOH . BA 6 HOH A 159 859 1723 HOH HOH . BA 6 HOH A 160 860 1810 HOH HOH . BA 6 HOH A 161 861 1831 HOH HOH . BA 6 HOH A 162 862 1788 HOH HOH . BA 6 HOH A 163 863 1812 HOH HOH . BA 6 HOH A 164 864 1758 HOH HOH . BA 6 HOH A 165 865 1791 HOH HOH . BA 6 HOH A 166 866 1836 HOH HOH . BA 6 HOH A 167 867 1745 HOH HOH . BA 6 HOH A 168 868 1710 HOH HOH . BA 6 HOH A 169 869 1827 HOH HOH . BA 6 HOH A 170 870 1807 HOH HOH . BA 6 HOH A 171 871 1762 HOH HOH . BA 6 HOH A 172 872 1822 HOH HOH . BA 6 HOH A 173 873 1752 HOH HOH . BA 6 HOH A 174 874 1777 HOH HOH . BA 6 HOH A 175 875 1739 HOH HOH . BA 6 HOH A 176 876 1808 HOH HOH . BA 6 HOH A 177 877 1780 HOH HOH . CA 6 HOH B 1 201 1239 HOH HOH . CA 6 HOH B 2 202 1235 HOH HOH . CA 6 HOH B 3 203 1236 HOH HOH . CA 6 HOH B 4 204 1220 HOH HOH . CA 6 HOH B 5 205 1219 HOH HOH . CA 6 HOH B 6 206 1215 HOH HOH . CA 6 HOH B 7 207 1229 HOH HOH . CA 6 HOH B 8 208 1214 HOH HOH . CA 6 HOH B 9 209 1228 HOH HOH . CA 6 HOH B 10 210 1217 HOH HOH . CA 6 HOH B 11 211 1237 HOH HOH . CA 6 HOH B 12 212 1753 HOH HOH . CA 6 HOH B 13 213 1241 HOH HOH . CA 6 HOH B 14 214 1223 HOH HOH . CA 6 HOH B 15 215 1212 HOH HOH . CA 6 HOH B 16 216 1230 HOH HOH . CA 6 HOH B 17 217 1224 HOH HOH . CA 6 HOH B 18 218 1216 HOH HOH . CA 6 HOH B 19 219 1218 HOH HOH . CA 6 HOH B 20 220 1226 HOH HOH . CA 6 HOH B 21 221 1233 HOH HOH . CA 6 HOH B 22 222 1227 HOH HOH . CA 6 HOH B 23 223 1225 HOH HOH . CA 6 HOH B 24 224 1234 HOH HOH . CA 6 HOH B 25 225 1221 HOH HOH . CA 6 HOH B 26 226 1242 HOH HOH . CA 6 HOH B 27 227 1240 HOH HOH . CA 6 HOH B 28 228 1232 HOH HOH . CA 6 HOH B 29 229 1238 HOH HOH . CA 6 HOH B 30 230 1231 HOH HOH . CA 6 HOH B 31 231 1755 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . Z 4 9.983 -2.541 24.81 1 38.05 0 C1 EDO 624 A 1 HETATM 2 O O1 EDO . . . Z 4 10.076 -3.83 25.404 1 34.38 0 O1 EDO 624 A 1 HETATM 3 C C2 EDO . . . Z 4 10.282 -1.453 25.775 1 40.14 0 C2 EDO 624 A 1 HETATM 4 O O2 EDO . . . Z 4 9.397 -1.451 26.894 1 34.64 0 O2 EDO 624 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #