data_8K0U # _model_server_result.job_id UAvjSNHNfVmngKgNYlEAhA _model_server_result.datetime_utc '2025-06-20 20:28:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k0u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 8K0U # _exptl.entry_id 8K0U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.111 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HYPOXANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8K0U _cell.length_a 49.102 _cell.length_b 49.102 _cell.length_c 51.657 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K0U _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OP1 DG 3 A DG 3 1_555 C NA NA . A NA 102 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.443 ? metalc ? metalc2 A O6 DG 4 A DG 4 1_555 D NA NA . A NA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc3 A OP1 DA 17 A DA 17 1_555 E NA NA . A NA 104 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc4 A O2 DC 20 A DC 20 1_555 C NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc5 A OP1 DG 21 A DG 21 1_555 E NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc6 A OP2 DT 22 A DT 22 1_555 E NA NA . A NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc7 A OP2 DC 26 A DC 26 1_555 G K K . A K 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc8 A OP2 DC 26 A DC 26 1_555 G K K . A K 106 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc9 C NA NA . A NA 102 1_555 H O HOH . A HOH 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc10 C NA NA . A NA 102 1_555 H O HOH . A HOH 268 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc11 D NA NA . A NA 103 1_555 H O HOH . A HOH 208 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc12 D NA NA . A NA 103 1_555 H O HOH . A HOH 262 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc13 D NA NA . A NA 103 1_555 H O HOH . A HOH 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc14 E NA NA . A NA 104 1_555 H O HOH . A HOH 219 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc15 E NA NA . A NA 104 1_555 H O HOH . A HOH 239 2_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc16 E NA NA . A NA 104 1_555 H O HOH . A HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc17 F NA NA . A NA 105 1_555 H O HOH . A HOH 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.516 ? metalc ? metalc18 F NA NA . A NA 105 1_555 H O HOH . A HOH 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc19 F NA NA . A NA 105 1_555 H O HOH . A HOH 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.547 ? metalc ? metalc20 F NA NA . A NA 105 1_555 H O HOH . A HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc21 F NA NA . A NA 105 1_555 H O HOH . A HOH 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc22 G K K . A K 106 1_555 H O HOH . A HOH 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? metalc ? metalc23 G K K . A K 106 1_555 H O HOH . A HOH 248 6_554 ? ? ? ? ? ? ? ? ? ? ? ? 3.078 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 A N3 DC 29 A DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 A O2 DC 29 A DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 A N4 DC 29 A DC 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 A N1 DG 28 A DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 A O6 DG 28 A DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 A N2 DG 28 A DG 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 A N3 DC 27 A DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 A O2 DC 27 A DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 A N4 DC 27 A DC 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 A N3 DC 26 A DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 A O2 DC 26 A DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 A N4 DC 26 A DC 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog13 A N3 DT 5 A DT 5 1_555 A O6 DG 25 A DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog14 A O2 DT 5 A DT 5 1_555 A N1 DG 25 A DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog15 A N7 DG 6 A DG 6 1_555 A N1 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog16 A O6 DG 6 A DG 6 1_555 A N2 DG 19 A DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 6 A DG 6 1_555 A N3 DC 24 A DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 6 A DG 6 1_555 A O2 DC 24 A DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 6 A DG 6 1_555 A N4 DC 24 A DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog20 A N7 DG 7 A DG 7 1_555 A N1 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_7_PAIR hydrog21 A O6 DG 7 A DG 7 1_555 A N2 DG 18 A DG 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 7 A DG 7 1_555 A N3 DC 23 A DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 7 A DG 7 1_555 A O2 DC 23 A DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 7 A DG 7 1_555 A N4 DC 23 A DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DC 9 A DC 9 1_555 A N1 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N4 DC 9 A DC 9 1_555 A O6 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A O2 DC 9 A DC 9 1_555 A N2 DG 21 A DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DA 11 A DA 11 1_555 A N3 DT 16 A DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N6 DA 11 A DA 11 1_555 A O4 DT 16 A DT 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog30 A N3 DT 12 A DT 12 1_555 A N7 DA 15 A DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog HOOGSTEEN hydrog31 A O4 DT 12 A DT 12 1_555 A N6 DA 15 A DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C5 H4 N4 O' _chem_comp.formula_weight 136.111 _chem_comp.id HPA _chem_comp.mon_nstd_flag . _chem_comp.name HYPOXANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 HPA sing 152 n y N1 C6 HPA sing 153 n y N1 HN1 HPA sing 154 n n C2 N3 HPA doub 155 n y C2 H2 HPA sing 156 n n N3 C4 HPA sing 157 n y C4 C5 HPA doub 158 n y C4 N9 HPA sing 159 n y C5 C6 HPA sing 160 n y C5 N7 HPA sing 161 n y C6 O6 HPA doub 162 n n N7 C8 HPA sing 163 n y N7 HN7 HPA sing 164 n n C8 N9 HPA doub 165 n y C8 H8 HPA sing 166 n n # _atom_sites.entry_id 8K0U _atom_sites.fract_transf_matrix[1][1] 0.020366 _atom_sites.fract_transf_matrix[1][2] 0.011758 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019358 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HPA A 1 101 101 HPA HPA . C 3 NA A 1 102 2 NA NA . D 3 NA A 1 103 3 NA NA . E 3 NA A 1 104 4 NA NA . F 3 NA A 1 105 5 NA NA . G 4 K A 1 106 1 K K . H 5 HOH A 1 201 39 HOH HOH . H 5 HOH A 2 202 17 HOH HOH . H 5 HOH A 3 203 12 HOH HOH . H 5 HOH A 4 204 35 HOH HOH . H 5 HOH A 5 205 48 HOH HOH . H 5 HOH A 6 206 32 HOH HOH . H 5 HOH A 7 207 50 HOH HOH . H 5 HOH A 8 208 13 HOH HOH . H 5 HOH A 9 209 41 HOH HOH . H 5 HOH A 10 210 43 HOH HOH . H 5 HOH A 11 211 8 HOH HOH . H 5 HOH A 12 212 3 HOH HOH . H 5 HOH A 13 213 75 HOH HOH . H 5 HOH A 14 214 26 HOH HOH . H 5 HOH A 15 215 55 HOH HOH . H 5 HOH A 16 216 42 HOH HOH . H 5 HOH A 17 217 58 HOH HOH . H 5 HOH A 18 218 15 HOH HOH . H 5 HOH A 19 219 1 HOH HOH . H 5 HOH A 20 220 7 HOH HOH . H 5 HOH A 21 221 49 HOH HOH . H 5 HOH A 22 222 70 HOH HOH . H 5 HOH A 23 223 29 HOH HOH . H 5 HOH A 24 224 30 HOH HOH . H 5 HOH A 25 225 22 HOH HOH . H 5 HOH A 26 226 53 HOH HOH . H 5 HOH A 27 227 25 HOH HOH . H 5 HOH A 28 228 72 HOH HOH . H 5 HOH A 29 229 27 HOH HOH . H 5 HOH A 30 230 61 HOH HOH . H 5 HOH A 31 231 31 HOH HOH . H 5 HOH A 32 232 20 HOH HOH . H 5 HOH A 33 233 74 HOH HOH . H 5 HOH A 34 234 9 HOH HOH . H 5 HOH A 35 235 2 HOH HOH . H 5 HOH A 36 236 34 HOH HOH . H 5 HOH A 37 237 11 HOH HOH . H 5 HOH A 38 238 5 HOH HOH . H 5 HOH A 39 239 36 HOH HOH . H 5 HOH A 40 240 6 HOH HOH . H 5 HOH A 41 241 4 HOH HOH . H 5 HOH A 42 242 64 HOH HOH . H 5 HOH A 43 243 57 HOH HOH . H 5 HOH A 44 244 19 HOH HOH . H 5 HOH A 45 245 46 HOH HOH . H 5 HOH A 46 246 44 HOH HOH . H 5 HOH A 47 247 14 HOH HOH . H 5 HOH A 48 248 52 HOH HOH . H 5 HOH A 49 249 45 HOH HOH . H 5 HOH A 50 250 37 HOH HOH . H 5 HOH A 51 251 23 HOH HOH . H 5 HOH A 52 252 10 HOH HOH . H 5 HOH A 53 253 16 HOH HOH . H 5 HOH A 54 254 60 HOH HOH . H 5 HOH A 55 255 47 HOH HOH . H 5 HOH A 56 256 67 HOH HOH . H 5 HOH A 57 257 51 HOH HOH . H 5 HOH A 58 258 62 HOH HOH . H 5 HOH A 59 259 33 HOH HOH . H 5 HOH A 60 260 56 HOH HOH . H 5 HOH A 61 261 66 HOH HOH . H 5 HOH A 62 262 40 HOH HOH . H 5 HOH A 63 263 38 HOH HOH . H 5 HOH A 64 264 18 HOH HOH . H 5 HOH A 65 265 63 HOH HOH . H 5 HOH A 66 266 65 HOH HOH . H 5 HOH A 67 267 21 HOH HOH . H 5 HOH A 68 268 71 HOH HOH . H 5 HOH A 69 269 59 HOH HOH . H 5 HOH A 70 270 69 HOH HOH . H 5 HOH A 71 271 68 HOH HOH . H 5 HOH A 72 272 24 HOH HOH . H 5 HOH A 73 273 73 HOH HOH . H 5 HOH A 74 274 54 HOH HOH . H 5 HOH A 75 275 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 HPA . . . B 2 12.778 -12.801 4.033 1 16.43 ? N1 HPA 101 A 1 HETATM 2 C C2 HPA . . . B 2 13.253 -13.742 3.121 1 15.91 ? C2 HPA 101 A 1 HETATM 3 N N3 HPA . . . B 2 12.373 -14.587 2.504 1 16.2 ? N3 HPA 101 A 1 HETATM 4 C C4 HPA . . . B 2 11.06 -14.453 2.728 1 15.03 ? C4 HPA 101 A 1 HETATM 5 C C5 HPA . . . B 2 10.534 -13.528 3.623 1 15.47 ? C5 HPA 101 A 1 HETATM 6 C C6 HPA . . . B 2 11.416 -12.665 4.273 1 17.77 ? C6 HPA 101 A 1 HETATM 7 O O6 HPA . . . B 2 11.04 -11.909 5.152 1 20.2 ? O6 HPA 101 A 1 HETATM 8 N N7 HPA . . . B 2 9.19 -13.664 3.651 1 18.81 ? N7 HPA 101 A 1 HETATM 9 C C8 HPA . . . B 2 8.915 -14.679 2.801 1 19.16 ? C8 HPA 101 A 1 HETATM 10 N N9 HPA . . . B 2 10.045 -15.165 2.242 1 17.57 ? N9 HPA 101 A 1 HETATM 11 H HN1 HPA . . . B 2 13.451 -12.193 4.541 1 19.88 ? HN1 HPA 101 A 1 HETATM 12 H H2 HPA . . . B 2 14.319 -13.803 2.901 1 19.27 ? H2 HPA 101 A 1 HETATM 13 H HN7 HPA . . . B 2 8.512 -13.106 4.207 1 22.74 ? HN7 HPA 101 A 1 HETATM 14 H H8 HPA . . . B 2 7.914 -15.056 2.594 1 23.17 ? H8 HPA 101 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #