data_8K1J # _model_server_result.job_id MR9O9i44zy-t-U6o_GmQTA _model_server_result.datetime_utc '2024-10-15 15:24:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8K1J # _exptl.entry_id 8K1J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K1J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 93 A THR 93 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc2 A O THR 93 A THR 93 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.114 ? metalc ? metalc3 A OG1 THR 93 A THR 93 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc4 A O ILE 94 A ILE 94 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc5 A O ILE 94 A ILE 94 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.027 ? metalc ? metalc6 A O GLY 95 A GLY 95 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc7 A O GLY 95 A GLY 95 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.66 ? metalc ? metalc8 A O TYR 96 A TYR 96 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.326 ? metalc ? metalc9 A O THR 199 A THR 199 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? metalc ? metalc10 A O THR 199 A THR 199 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc11 A OG1 THR 199 A THR 199 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.295 ? metalc ? metalc12 A O ILE 200 A ILE 200 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.648 ? metalc ? metalc13 A O ILE 200 A ILE 200 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc14 A O GLY 201 A GLY 201 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.965 ? metalc ? metalc15 A O GLY 201 A GLY 201 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc16 A O PHE 202 A PHE 202 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.368 ? metalc ? metalc17 G K K . A K 305 1_555 B O GLY 95 B GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.841 ? metalc ? metalc18 G K K . A K 305 1_555 B O TYR 96 B TYR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.352 ? metalc ? metalc19 G K K . A K 305 1_555 B O GLY 201 B GLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc20 G K K . A K 305 1_555 B O PHE 202 B PHE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.36 ? metalc ? metalc21 H K K . A K 306 1_555 B O ILE 94 B ILE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc22 H K K . A K 306 1_555 B O GLY 95 B GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc23 H K K . A K 306 1_555 B O ILE 200 B ILE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.669 ? metalc ? metalc24 H K K . A K 306 1_555 B O GLY 201 B GLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc25 I K K . A K 307 1_555 B O THR 93 B THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? metalc ? metalc26 I K K . A K 307 1_555 B O ILE 94 B ILE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.038 ? metalc ? metalc27 I K K . A K 307 1_555 B O THR 199 B THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc28 I K K . A K 307 1_555 B O ILE 200 B ILE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc29 J K K . A K 308 1_555 B O THR 93 B THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.065 ? metalc ? metalc30 J K K . A K 308 1_555 B OG1 THR 93 B THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? metalc ? metalc31 J K K . A K 308 1_555 B O THR 199 B THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.801 ? metalc ? metalc32 J K K . A K 308 1_555 B OG1 THR 199 B THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.292 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 376 n n CBA CAB Y01 sing 377 n n CBA CAN Y01 sing 378 n n CAN CAJ Y01 sing 379 n n CAJ CAO Y01 sing 380 n n CAO CBB Y01 sing 381 n n CBB CAC Y01 sing 382 n n CBB CBE Y01 sing 383 n n CBE CAP Y01 sing 384 n n CBE CBI Y01 sing 385 n n CAP CAQ Y01 sing 386 n n CAQ CBG Y01 sing 387 n n CBG CBI Y01 sing 388 n n CBG CBD Y01 sing 389 n n CBI CAE Y01 sing 390 n n CBI CAU Y01 sing 391 n n CAU CAS Y01 sing 392 n n CAS CBF Y01 sing 393 n n CBF CBD Y01 sing 394 n n CBF CBH Y01 sing 395 n n CBD CAK Y01 sing 396 n n CAK CAI Y01 sing 397 n n CAI CAZ Y01 doub 398 n n CAZ CAV Y01 sing 399 n n CAZ CBH Y01 sing 400 n n CAV CBC Y01 sing 401 n n CBH CAD Y01 sing 402 n n CBH CAT Y01 sing 403 n n CAT CAR Y01 sing 404 n n CAR CBC Y01 sing 405 n n CBC OAW Y01 sing 406 n n OAW CAY Y01 sing 407 n n CAY OAG Y01 doub 408 n n CAY CAM Y01 sing 409 n n CAM CAL Y01 sing 410 n n CAL CAX Y01 sing 411 n n CAX OAH Y01 sing 412 n n CAX OAF Y01 doub 413 n n CAA HAA1 Y01 sing 414 n n CAA HAA2 Y01 sing 415 n n CAA HAA3 Y01 sing 416 n n CBA HBA Y01 sing 417 n n CAB HAB1 Y01 sing 418 n n CAB HAB2 Y01 sing 419 n n CAB HAB3 Y01 sing 420 n n CAN HAN1 Y01 sing 421 n n CAN HAN2 Y01 sing 422 n n CAJ HAJ1 Y01 sing 423 n n CAJ HAJ2 Y01 sing 424 n n CAO HAO1 Y01 sing 425 n n CAO HAO2 Y01 sing 426 n n CBB HBB Y01 sing 427 n n CAC HAC1 Y01 sing 428 n n CAC HAC2 Y01 sing 429 n n CAC HAC3 Y01 sing 430 n n CBE HBE Y01 sing 431 n n CAP HAP1 Y01 sing 432 n n CAP HAP2 Y01 sing 433 n n CAQ HAQ1 Y01 sing 434 n n CAQ HAQ2 Y01 sing 435 n n CBG HBG Y01 sing 436 n n CBD HBD Y01 sing 437 n n CAE HAE1 Y01 sing 438 n n CAE HAE2 Y01 sing 439 n n CAE HAE3 Y01 sing 440 n n CAU HAU1 Y01 sing 441 n n CAU HAU2 Y01 sing 442 n n CAS HAS1 Y01 sing 443 n n CAS HAS2 Y01 sing 444 n n CBF HBF Y01 sing 445 n n CAK HAK1 Y01 sing 446 n n CAK HAK2 Y01 sing 447 n n CAI HAI Y01 sing 448 n n CAV HAV1 Y01 sing 449 n n CAV HAV2 Y01 sing 450 n n CBC HBC Y01 sing 451 n n CAD HAD1 Y01 sing 452 n n CAD HAD2 Y01 sing 453 n n CAD HAD3 Y01 sing 454 n n CAT HAT1 Y01 sing 455 n n CAT HAT2 Y01 sing 456 n n CAR HAR1 Y01 sing 457 n n CAR HAR2 Y01 sing 458 n n CAM HAM1 Y01 sing 459 n n CAM HAM2 Y01 sing 460 n n CAL HAL1 Y01 sing 461 n n CAL HAL2 Y01 sing 462 n n OAH HAH Y01 sing 463 n n # _atom_sites.entry_id 8K1J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 301 301 Y01 Y01 . D 2 Y01 A 1 302 302 Y01 Y01 . E 2 Y01 A 1 303 303 Y01 Y01 . F 3 K A 1 304 0 K K . G 3 K A 1 305 1 K K . H 3 K A 1 306 2 K K . I 3 K A 1 307 3 K K . J 3 K A 1 308 4 K K . K 2 Y01 B 1 301 301 Y01 Y01 . L 2 Y01 B 1 302 302 Y01 Y01 . M 2 Y01 B 1 303 303 Y01 Y01 . N 4 HOH A 1 401 2 HOH HOH . N 4 HOH A 2 402 3 HOH HOH . N 4 HOH A 3 403 4 HOH HOH . N 4 HOH A 4 404 12 HOH HOH . N 4 HOH A 5 405 10 HOH HOH . N 4 HOH A 6 406 8 HOH HOH . O 4 HOH B 1 401 6 HOH HOH . O 4 HOH B 2 402 1 HOH HOH . O 4 HOH B 3 403 5 HOH HOH . O 4 HOH B 4 404 11 HOH HOH . O 4 HOH B 5 405 7 HOH HOH . O 4 HOH B 6 406 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . D 2 86.863 127.261 104.515 1 92.37 ? CAA Y01 302 A 1 HETATM 2 C CBA Y01 . . . D 2 88.091 127.107 105.409 1 90.42 ? CBA Y01 302 A 1 HETATM 3 C CAB Y01 . . . D 2 88.932 128.38 105.384 1 90.74 ? CAB Y01 302 A 1 HETATM 4 C CAN Y01 . . . D 2 87.715 126.751 106.849 1 87.98 ? CAN Y01 302 A 1 HETATM 5 C CAJ Y01 . . . D 2 87.375 125.284 107.092 1 90.78 ? CAJ Y01 302 A 1 HETATM 6 C CAO Y01 . . . D 2 86.424 125.095 108.271 1 90.54 ? CAO Y01 302 A 1 HETATM 7 C CBB Y01 . . . D 2 87.082 124.938 109.651 1 91.14 ? CBB Y01 302 A 1 HETATM 8 C CAC Y01 . . . D 2 87.096 126.284 110.372 1 90.34 ? CAC Y01 302 A 1 HETATM 9 C CBE Y01 . . . D 2 86.379 123.81 110.427 1 89.98 ? CBE Y01 302 A 1 HETATM 10 C CAP Y01 . . . D 2 86.229 122.537 109.547 1 89.87 ? CAP Y01 302 A 1 HETATM 11 C CAQ Y01 . . . D 2 86.384 121.315 110.471 1 88.99 ? CAQ Y01 302 A 1 HETATM 12 C CBG Y01 . . . D 2 86.236 121.923 111.857 1 89.07 ? CBG Y01 302 A 1 HETATM 13 C CBI Y01 . . . D 2 86.974 123.269 111.758 1 89.52 ? CBI Y01 302 A 1 HETATM 14 C CAE Y01 . . . D 2 88.49 123.084 111.622 1 89.97 ? CAE Y01 302 A 1 HETATM 15 C CAU Y01 . . . D 2 86.622 124.042 113.034 1 91.49 ? CAU Y01 302 A 1 HETATM 16 C CAS Y01 . . . D 2 86.938 123.248 114.304 1 90.46 ? CAS Y01 302 A 1 HETATM 17 C CBF Y01 . . . D 2 86.273 121.869 114.343 1 89.28 ? CBF Y01 302 A 1 HETATM 18 C CBD Y01 . . . D 2 86.582 121.071 113.068 1 86.19 ? CBD Y01 302 A 1 HETATM 19 C CAK Y01 . . . D 2 85.78 119.774 113.048 1 86.38 ? CAK Y01 302 A 1 HETATM 20 C CAI Y01 . . . D 2 85.729 119.094 114.375 1 86.32 ? CAI Y01 302 A 1 HETATM 21 C CAZ Y01 . . . D 2 86.079 119.652 115.533 1 87.85 ? CAZ Y01 302 A 1 HETATM 22 C CAV Y01 . . . D 2 86.003 118.853 116.808 1 89.64 ? CAV Y01 302 A 1 HETATM 23 C CBH Y01 . . . D 2 86.575 121.084 115.646 1 87.56 ? CBH Y01 302 A 1 HETATM 24 C CAD Y01 . . . D 2 88.079 121.058 115.961 1 86.7 ? CAD Y01 302 A 1 HETATM 25 C CAT Y01 . . . D 2 85.816 121.764 116.808 1 90.66 ? CAT Y01 302 A 1 HETATM 26 C CAR Y01 . . . D 2 85.814 120.974 118.111 1 91.66 ? CAR Y01 302 A 1 HETATM 27 C CBC Y01 . . . D 2 85.221 119.598 117.882 1 91.88 ? CBC Y01 302 A 1 HETATM 28 O OAW Y01 . . . D 2 85.279 118.894 119.134 1 90.33 ? OAW Y01 302 A 1 HETATM 29 C CAY Y01 . . . D 2 84.169 118.748 119.856 1 90.65 ? CAY Y01 302 A 1 HETATM 30 O OAG Y01 . . . D 2 83.088 119.152 119.503 1 91.87 ? OAG Y01 302 A 1 HETATM 31 C CAM Y01 . . . D 2 84.452 118.025 121.145 1 89.38 ? CAM Y01 302 A 1 HETATM 32 C CAL Y01 . . . D 2 85.459 118.729 122.033 1 91.65 ? CAL Y01 302 A 1 HETATM 33 C CAX Y01 . . . D 2 84.943 120.024 122.688 1 92.98 ? CAX Y01 302 A 1 HETATM 34 O OAH Y01 . . . D 2 84.081 119.872 123.578 1 92.32 ? OAH Y01 302 A 1 HETATM 35 O OAF Y01 . . . D 2 85.413 121.108 122.289 1 93.01 ? OAF Y01 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #