data_8K1O
#
_model_server_result.job_id            MXYVMKse4BqyXmlr4BcA_g 
_model_server_result.datetime_utc      '2024-12-22 01:13:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k1o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    8K1O 
#
_exptl.entry_id    8K1O 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K1O 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K1O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OG SER 49 B SER 49 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
metalc ? metalc2 F O3G ANP . B ANP 401 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc3 F O2B ANP . B ANP 401 1_555 G MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? 
metalc ? metalc4 C OG SER 49 C SER 49 1_555 I MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? 
metalc ? metalc5 H O3G ANP . C ANP 401 1_555 I MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
metalc ? metalc6 H O2B ANP . C ANP 401 1_555 I MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8K1O 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 3 CDL A 1 601 1 CDL CDL . 
E 3 CDL A 1 602 2 CDL CDL . 
F 4 ANP B 1 401 301 ANP ANP . 
G 5 MG B 1 402 401 MG MG . 
H 4 ANP C 1 401 301 ANP ANP . 
I 5 MG C 1 402 401 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . H 4 167.88 187.518 163.652 1 46.75 ? PG ANP 401 C 1 
HETATM 2 O O1G ANP . . . H 4 167.786 188.778 162.862 1 46.75 ? O1G ANP 401 C 1 
HETATM 3 O O2G ANP . . . H 4 168.789 186.507 162.863 1 46.75 ? O2G ANP 401 C 1 
HETATM 4 O O3G ANP . . . H 4 166.434 186.91 163.838 1 46.75 ? O3G ANP 401 C 1 
HETATM 5 P PB ANP . . . H 4 167.92 186.872 166.353 1 46.75 ? PB ANP 401 C 1 
HETATM 6 O O1B ANP . . . H 4 167.842 187.655 167.615 1 46.75 ? O1B ANP 401 C 1 
HETATM 7 O O2B ANP . . . H 4 166.5 186.421 165.917 1 46.75 ? O2B ANP 401 C 1 
HETATM 8 N N3B ANP . . . H 4 168.583 187.836 165.157 1 46.75 ? N3B ANP 401 C 1 
HETATM 9 P PA ANP . . . H 4 168.3 184.423 167.489 1 46.75 ? PA ANP 401 C 1 
HETATM 10 O O1A ANP . . . H 4 167.35 183.554 166.77 1 46.75 ? O1A ANP 401 C 1 
HETATM 11 O O2A ANP . . . H 4 167.737 185.024 168.772 1 46.75 ? O2A ANP 401 C 1 
HETATM 12 O O3A ANP . . . H 4 168.813 185.623 166.592 1 46.75 ? O3A ANP 401 C 1 
HETATM 13 O O5' ANP . . . H 4 169.586 183.586 167.804 1 46.75 ? O5' ANP 401 C 1 
HETATM 14 C C5' ANP . . . H 4 170.349 183.824 168.998 1 46.75 ? C5' ANP 401 C 1 
HETATM 15 C C4' ANP . . . H 4 171.595 182.971 168.976 1 46.75 ? C4' ANP 401 C 1 
HETATM 16 O O4' ANP . . . H 4 171.283 181.645 169.455 1 46.75 ? O4' ANP 401 C 1 
HETATM 17 C C3' ANP . . . H 4 172.253 182.789 167.611 1 46.75 ? C3' ANP 401 C 1 
HETATM 18 O O3' ANP . . . H 4 173.67 182.782 167.735 1 46.75 ? O3' ANP 401 C 1 
HETATM 19 C C2' ANP . . . H 4 171.721 181.431 167.151 1 46.75 ? C2' ANP 401 C 1 
HETATM 20 O O2' ANP . . . H 4 172.635 180.782 166.275 1 46.75 ? O2' ANP 401 C 1 
HETATM 21 C C1' ANP . . . H 4 171.607 180.681 168.475 1 46.75 ? C1' ANP 401 C 1 
HETATM 22 N N9 ANP . . . H 4 170.566 179.661 168.487 1 46.75 ? N9 ANP 401 C 1 
HETATM 23 C C8 ANP . . . H 4 169.227 179.849 168.27 1 46.75 ? C8 ANP 401 C 1 
HETATM 24 N N7 ANP . . . H 4 168.515 178.751 168.345 1 46.75 ? N7 ANP 401 C 1 
HETATM 25 C C5 ANP . . . H 4 169.451 177.772 168.636 1 46.75 ? C5 ANP 401 C 1 
HETATM 26 C C6 ANP . . . H 4 169.337 176.384 168.844 1 46.75 ? C6 ANP 401 C 1 
HETATM 27 N N6 ANP . . . H 4 168.183 175.718 168.788 1 46.75 ? N6 ANP 401 C 1 
HETATM 28 N N1 ANP . . . H 4 170.468 175.697 169.114 1 46.75 ? N1 ANP 401 C 1 
HETATM 29 C C2 ANP . . . H 4 171.626 176.359 169.172 1 46.75 ? C2 ANP 401 C 1 
HETATM 30 N N3 ANP . . . H 4 171.856 177.662 168.993 1 46.75 ? N3 ANP 401 C 1 
HETATM 31 C C4 ANP . . . H 4 170.719 178.318 168.729 1 46.75 ? C4 ANP 401 C 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           360 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#