data_8K1V # _model_server_result.job_id x1ic4PiR5gJWfKIe8iyjtA _model_server_result.datetime_utc '2024-10-15 14:25:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k1v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":303}' # _entry.id 8K1V # _exptl.entry_id 8K1V _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K1V _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K1V _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 K N N ? 2 L N N ? 2 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 93 A THR 93 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc2 A O THR 93 A THR 93 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.182 ? metalc ? metalc3 A OG1 THR 93 A THR 93 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc4 A O ILE 94 A ILE 94 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc5 A O ILE 94 A ILE 94 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.094 ? metalc ? metalc6 A O GLY 95 A GLY 95 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.797 ? metalc ? metalc7 A O GLY 95 A GLY 95 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.677 ? metalc ? metalc8 A O TYR 96 A TYR 96 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.38 ? metalc ? metalc9 A O THR 199 A THR 199 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.922 ? metalc ? metalc10 A O THR 199 A THR 199 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.772 ? metalc ? metalc11 A OG1 THR 199 A THR 199 1_555 J K K . A K 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.343 ? metalc ? metalc12 A O ILE 200 A ILE 200 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc13 A O ILE 200 A ILE 200 1_555 I K K . A K 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.757 ? metalc ? metalc14 A O GLY 201 A GLY 201 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc15 A O GLY 201 A GLY 201 1_555 H K K . A K 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? metalc ? metalc16 A O PHE 202 A PHE 202 1_555 G K K . A K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.387 ? metalc ? metalc17 G K K . A K 305 1_555 B O GLY 95 B GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? metalc ? metalc18 G K K . A K 305 1_555 B O TYR 96 B TYR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.419 ? metalc ? metalc19 G K K . A K 305 1_555 B O GLY 201 B GLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc20 G K K . A K 305 1_555 B O PHE 202 B PHE 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.416 ? metalc ? metalc21 H K K . A K 306 1_555 B O ILE 94 B ILE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc22 H K K . A K 306 1_555 B O GLY 95 B GLY 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc23 H K K . A K 306 1_555 B O ILE 200 B ILE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.652 ? metalc ? metalc24 H K K . A K 306 1_555 B O GLY 201 B GLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc25 I K K . A K 307 1_555 B O THR 93 B THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc26 I K K . A K 307 1_555 B O ILE 94 B ILE 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? metalc ? metalc27 I K K . A K 307 1_555 B O THR 199 B THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.859 ? metalc ? metalc28 I K K . A K 307 1_555 B O ILE 200 B ILE 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.817 ? metalc ? metalc29 J K K . A K 308 1_555 B O THR 93 B THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.132 ? metalc ? metalc30 J K K . A K 308 1_555 B OG1 THR 93 B THR 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.113 ? metalc ? metalc31 J K K . A K 308 1_555 B O THR 199 B THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc32 J K K . A K 308 1_555 B OG1 THR 199 B THR 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.212 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 376 n n CBA CAB Y01 sing 377 n n CBA CAN Y01 sing 378 n n CAN CAJ Y01 sing 379 n n CAJ CAO Y01 sing 380 n n CAO CBB Y01 sing 381 n n CBB CAC Y01 sing 382 n n CBB CBE Y01 sing 383 n n CBE CAP Y01 sing 384 n n CBE CBI Y01 sing 385 n n CAP CAQ Y01 sing 386 n n CAQ CBG Y01 sing 387 n n CBG CBI Y01 sing 388 n n CBG CBD Y01 sing 389 n n CBI CAE Y01 sing 390 n n CBI CAU Y01 sing 391 n n CAU CAS Y01 sing 392 n n CAS CBF Y01 sing 393 n n CBF CBD Y01 sing 394 n n CBF CBH Y01 sing 395 n n CBD CAK Y01 sing 396 n n CAK CAI Y01 sing 397 n n CAI CAZ Y01 doub 398 n n CAZ CAV Y01 sing 399 n n CAZ CBH Y01 sing 400 n n CAV CBC Y01 sing 401 n n CBH CAD Y01 sing 402 n n CBH CAT Y01 sing 403 n n CAT CAR Y01 sing 404 n n CAR CBC Y01 sing 405 n n CBC OAW Y01 sing 406 n n OAW CAY Y01 sing 407 n n CAY OAG Y01 doub 408 n n CAY CAM Y01 sing 409 n n CAM CAL Y01 sing 410 n n CAL CAX Y01 sing 411 n n CAX OAH Y01 sing 412 n n CAX OAF Y01 doub 413 n n CAA HAA1 Y01 sing 414 n n CAA HAA2 Y01 sing 415 n n CAA HAA3 Y01 sing 416 n n CBA HBA Y01 sing 417 n n CAB HAB1 Y01 sing 418 n n CAB HAB2 Y01 sing 419 n n CAB HAB3 Y01 sing 420 n n CAN HAN1 Y01 sing 421 n n CAN HAN2 Y01 sing 422 n n CAJ HAJ1 Y01 sing 423 n n CAJ HAJ2 Y01 sing 424 n n CAO HAO1 Y01 sing 425 n n CAO HAO2 Y01 sing 426 n n CBB HBB Y01 sing 427 n n CAC HAC1 Y01 sing 428 n n CAC HAC2 Y01 sing 429 n n CAC HAC3 Y01 sing 430 n n CBE HBE Y01 sing 431 n n CAP HAP1 Y01 sing 432 n n CAP HAP2 Y01 sing 433 n n CAQ HAQ1 Y01 sing 434 n n CAQ HAQ2 Y01 sing 435 n n CBG HBG Y01 sing 436 n n CBD HBD Y01 sing 437 n n CAE HAE1 Y01 sing 438 n n CAE HAE2 Y01 sing 439 n n CAE HAE3 Y01 sing 440 n n CAU HAU1 Y01 sing 441 n n CAU HAU2 Y01 sing 442 n n CAS HAS1 Y01 sing 443 n n CAS HAS2 Y01 sing 444 n n CBF HBF Y01 sing 445 n n CAK HAK1 Y01 sing 446 n n CAK HAK2 Y01 sing 447 n n CAI HAI Y01 sing 448 n n CAV HAV1 Y01 sing 449 n n CAV HAV2 Y01 sing 450 n n CBC HBC Y01 sing 451 n n CAD HAD1 Y01 sing 452 n n CAD HAD2 Y01 sing 453 n n CAD HAD3 Y01 sing 454 n n CAT HAT1 Y01 sing 455 n n CAT HAT2 Y01 sing 456 n n CAR HAR1 Y01 sing 457 n n CAR HAR2 Y01 sing 458 n n CAM HAM1 Y01 sing 459 n n CAM HAM2 Y01 sing 460 n n CAL HAL1 Y01 sing 461 n n CAL HAL2 Y01 sing 462 n n OAH HAH Y01 sing 463 n n # _atom_sites.entry_id 8K1V _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 301 301 Y01 Y01 . D 2 Y01 A 1 302 302 Y01 Y01 . E 2 Y01 A 1 303 303 Y01 Y01 . F 3 K A 1 304 0 K K . G 3 K A 1 305 1 K K . H 3 K A 1 306 2 K K . I 3 K A 1 307 3 K K . J 3 K A 1 308 4 K K . K 2 Y01 B 1 301 301 Y01 Y01 . L 2 Y01 B 1 302 302 Y01 Y01 . M 2 Y01 B 1 303 303 Y01 Y01 . N 4 HOH A 1 401 2 HOH HOH . O 4 HOH B 1 401 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . M 2 125.071 86.597 117.854 1 91.99 ? CAA Y01 303 B 1 HETATM 2 C CBA Y01 . . . M 2 125.522 87.396 116.635 1 90.17 ? CBA Y01 303 B 1 HETATM 3 C CAB Y01 . . . M 2 127.016 87.693 116.718 1 86.77 ? CAB Y01 303 B 1 HETATM 4 C CAN Y01 . . . M 2 125.2 86.677 115.323 1 88.17 ? CAN Y01 303 B 1 HETATM 5 C CAJ Y01 . . . M 2 123.716 86.499 115.026 1 92.2 ? CAJ Y01 303 B 1 HETATM 6 C CAO Y01 . . . M 2 123.464 85.445 113.951 1 92.86 ? CAO Y01 303 B 1 HETATM 7 C CBB Y01 . . . M 2 123.461 85.956 112.502 1 89.96 ? CBB Y01 303 B 1 HETATM 8 C CAC Y01 . . . M 2 124.808 85.662 111.846 1 87.78 ? CAC Y01 303 B 1 HETATM 9 C CBE Y01 . . . M 2 122.257 85.368 111.746 1 92.77 ? CBE Y01 303 B 1 HETATM 10 C CAP Y01 . . . M 2 120.976 85.372 112.627 1 88.06 ? CAP Y01 303 B 1 HETATM 11 C CAQ Y01 . . . M 2 119.775 85.623 111.696 1 83.31 ? CAQ Y01 303 B 1 HETATM 12 C CBG Y01 . . . M 2 120.37 85.408 110.313 1 87.9 ? CBG Y01 303 B 1 HETATM 13 C CBI Y01 . . . M 2 121.783 86.008 110.412 1 91.9 ? CBI Y01 303 B 1 HETATM 14 C CAE Y01 . . . M 2 121.754 87.535 110.544 1 89.18 ? CAE Y01 303 B 1 HETATM 15 C CAU Y01 . . . M 2 122.522 85.576 109.141 1 93.06 ? CAU Y01 303 B 1 HETATM 16 C CAS Y01 . . . M 2 121.769 85.974 107.869 1 88.67 ? CAS Y01 303 B 1 HETATM 17 C CBF Y01 . . . M 2 120.328 85.456 107.823 1 84.1 ? CBF Y01 303 B 1 HETATM 18 C CBD Y01 . . . M 2 119.56 85.833 109.098 1 78.34 ? CBD Y01 303 B 1 HETATM 19 C CAK Y01 . . . M 2 118.195 85.153 109.111 1 80.89 ? CAK Y01 303 B 1 HETATM 20 C CAI Y01 . . . M 2 117.52 85.162 107.781 1 84.46 ? CAI Y01 303 B 1 HETATM 21 C CAZ Y01 . . . M 2 118.111 85.467 106.627 1 84.31 ? CAZ Y01 303 B 1 HETATM 22 C CAV Y01 . . . M 2 117.313 85.469 105.349 1 90.83 ? CAV Y01 303 B 1 HETATM 23 C CBH Y01 . . . M 2 119.578 85.851 106.525 1 81.44 ? CBH Y01 303 B 1 HETATM 24 C CAD Y01 . . . M 2 119.67 87.361 106.253 1 87.31 ? CAD Y01 303 B 1 HETATM 25 C CAT Y01 . . . M 2 120.203 85.073 105.346 1 92.17 ? CAT Y01 303 B 1 HETATM 26 C CAR Y01 . . . M 2 119.413 85.148 104.045 1 89.82 ? CAR Y01 303 B 1 HETATM 27 C CBC Y01 . . . M 2 118.002 84.645 104.269 1 95.96 ? CBC Y01 303 B 1 HETATM 28 O OAW Y01 . . . M 2 117.301 84.754 103.019 1 99.13 ? OAW Y01 303 B 1 HETATM 29 C CAY Y01 . . . M 2 116.927 83.646 102.381 1 94.71 ? CAY Y01 303 B 1 HETATM 30 O OAG Y01 . . . M 2 117.159 82.534 102.789 1 91.05 ? OAG Y01 303 B 1 HETATM 31 C CAM Y01 . . . M 2 116.191 83.973 101.11 1 93.48 ? CAM Y01 303 B 1 HETATM 32 C CAL Y01 . . . M 2 116.974 84.859 100.161 1 96.85 ? CAL Y01 303 B 1 HETATM 33 C CAX Y01 . . . M 2 118.287 84.243 99.644 1 95.13 ? CAX Y01 303 B 1 HETATM 34 O OAH Y01 . . . M 2 118.164 83.212 98.953 1 95.62 ? OAH Y01 303 B 1 HETATM 35 O OAF Y01 . . . M 2 119.357 84.808 99.948 1 92.28 ? OAF Y01 303 B 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 35 #