data_8K1Y
#
_model_server_result.job_id            m3be7yZBbh_DLRKyyUvlcw 
_model_server_result.datetime_utc      '2024-11-07 08:45:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k1y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":616}' 
#
_entry.id    8K1Y 
#
_exptl.entry_id    8K1Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          8 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          105.18 
_cell.angle_gamma         90 
_cell.entry_id            8K1Y 
_cell.length_a            185.004 
_cell.length_b            38.418 
_cell.length_c            95.781 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K1Y 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 8 N N N 
? 8 O N N 
? 8 P N N 
? 8 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? 
disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
disulf ? disulf11 A SG CYS 360 A CYS 360 1_555 A SG CYS 369 A CYS 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf12 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf13 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf14 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf15 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
disulf ? disulf16 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
disulf ? disulf17 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc1 B N NO . A NO 601 1_555 E RU RU . A RU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
metalc ? metalc2 C N VAL . A VAL 602 1_555 E RU RU . A RU 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc3 E RU RU . A RU 604 1_555 R O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 83 n n 
S C1 DMS sing 84 n n 
S C2 DMS sing 85 n n 
C1 H11 DMS sing 86 n n 
C1 H12 DMS sing 87 n n 
C1 H13 DMS sing 88 n n 
C2 H21 DMS sing 89 n n 
C2 H22 DMS sing 90 n n 
C2 H23 DMS sing 91 n n 
#
_atom_sites.entry_id                     8K1Y 
_atom_sites.fract_transf_matrix[1][1]    0.005405 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001467 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026029 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010818 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NO A 1 601 1 NO NO . 
C 3 VAL A 1 602 1 VAL VAL . 
D 4 CL A 1 603 1 CL CL . 
E 5 RU A 1 604 1 RU RU . 
F 6 PLM A 1 605 1 PLM PLM . 
G 6 PLM A 1 606 2 PLM PLM . 
H 6 PLM A 1 607 3 PLM PLM . 
I 6 PLM A 1 608 4 PLM PLM . 
J 6 PLM A 1 609 5 PLM PLM . 
K 6 PLM A 1 610 6 PLM PLM . 
L 7 GOL A 1 611 1 GOL GOL . 
M 7 GOL A 1 612 2 GOL GOL . 
N 8 DMS A 1 613 1 DMS DMS . 
O 8 DMS A 1 614 2 DMS DMS . 
P 8 DMS A 1 615 3 DMS DMS . 
Q 8 DMS A 1 616 4 DMS DMS . 
R 9 HOH A 1 701 110 HOH HOH . 
R 9 HOH A 2 702 95 HOH HOH . 
R 9 HOH A 3 703 148 HOH HOH . 
R 9 HOH A 4 704 123 HOH HOH . 
R 9 HOH A 5 705 54 HOH HOH . 
R 9 HOH A 6 706 56 HOH HOH . 
R 9 HOH A 7 707 84 HOH HOH . 
R 9 HOH A 8 708 100 HOH HOH . 
R 9 HOH A 9 709 104 HOH HOH . 
R 9 HOH A 10 710 115 HOH HOH . 
R 9 HOH A 11 711 57 HOH HOH . 
R 9 HOH A 12 712 99 HOH HOH . 
R 9 HOH A 13 713 102 HOH HOH . 
R 9 HOH A 14 714 91 HOH HOH . 
R 9 HOH A 15 715 155 HOH HOH . 
R 9 HOH A 16 716 38 HOH HOH . 
R 9 HOH A 17 717 101 HOH HOH . 
R 9 HOH A 18 718 68 HOH HOH . 
R 9 HOH A 19 719 23 HOH HOH . 
R 9 HOH A 20 720 144 HOH HOH . 
R 9 HOH A 21 721 55 HOH HOH . 
R 9 HOH A 22 722 103 HOH HOH . 
R 9 HOH A 23 723 113 HOH HOH . 
R 9 HOH A 24 724 35 HOH HOH . 
R 9 HOH A 25 725 3 HOH HOH . 
R 9 HOH A 26 726 37 HOH HOH . 
R 9 HOH A 27 727 29 HOH HOH . 
R 9 HOH A 28 728 1 HOH HOH . 
R 9 HOH A 29 729 127 HOH HOH . 
R 9 HOH A 30 730 62 HOH HOH . 
R 9 HOH A 31 731 117 HOH HOH . 
R 9 HOH A 32 732 16 HOH HOH . 
R 9 HOH A 33 733 124 HOH HOH . 
R 9 HOH A 34 734 32 HOH HOH . 
R 9 HOH A 35 735 85 HOH HOH . 
R 9 HOH A 36 736 76 HOH HOH . 
R 9 HOH A 37 737 47 HOH HOH . 
R 9 HOH A 38 738 33 HOH HOH . 
R 9 HOH A 39 739 52 HOH HOH . 
R 9 HOH A 40 740 86 HOH HOH . 
R 9 HOH A 41 741 48 HOH HOH . 
R 9 HOH A 42 742 12 HOH HOH . 
R 9 HOH A 43 743 77 HOH HOH . 
R 9 HOH A 44 744 156 HOH HOH . 
R 9 HOH A 45 745 19 HOH HOH . 
R 9 HOH A 46 746 15 HOH HOH . 
R 9 HOH A 47 747 89 HOH HOH . 
R 9 HOH A 48 748 17 HOH HOH . 
R 9 HOH A 49 749 147 HOH HOH . 
R 9 HOH A 50 750 87 HOH HOH . 
R 9 HOH A 51 751 22 HOH HOH . 
R 9 HOH A 52 752 63 HOH HOH . 
R 9 HOH A 53 753 96 HOH HOH . 
R 9 HOH A 54 754 78 HOH HOH . 
R 9 HOH A 55 755 79 HOH HOH . 
R 9 HOH A 56 756 135 HOH HOH . 
R 9 HOH A 57 757 92 HOH HOH . 
R 9 HOH A 58 758 34 HOH HOH . 
R 9 HOH A 59 759 112 HOH HOH . 
R 9 HOH A 60 760 28 HOH HOH . 
R 9 HOH A 61 761 128 HOH HOH . 
R 9 HOH A 62 762 31 HOH HOH . 
R 9 HOH A 63 763 50 HOH HOH . 
R 9 HOH A 64 764 41 HOH HOH . 
R 9 HOH A 65 765 105 HOH HOH . 
R 9 HOH A 66 766 39 HOH HOH . 
R 9 HOH A 67 767 90 HOH HOH . 
R 9 HOH A 68 768 111 HOH HOH . 
R 9 HOH A 69 769 94 HOH HOH . 
R 9 HOH A 70 770 146 HOH HOH . 
R 9 HOH A 71 771 138 HOH HOH . 
R 9 HOH A 72 772 114 HOH HOH . 
R 9 HOH A 73 773 67 HOH HOH . 
R 9 HOH A 74 774 9 HOH HOH . 
R 9 HOH A 75 775 154 HOH HOH . 
R 9 HOH A 76 776 66 HOH HOH . 
R 9 HOH A 77 777 25 HOH HOH . 
R 9 HOH A 78 778 139 HOH HOH . 
R 9 HOH A 79 779 42 HOH HOH . 
R 9 HOH A 80 780 14 HOH HOH . 
R 9 HOH A 81 781 60 HOH HOH . 
R 9 HOH A 82 782 4 HOH HOH . 
R 9 HOH A 83 783 45 HOH HOH . 
R 9 HOH A 84 784 97 HOH HOH . 
R 9 HOH A 85 785 69 HOH HOH . 
R 9 HOH A 86 786 64 HOH HOH . 
R 9 HOH A 87 787 106 HOH HOH . 
R 9 HOH A 88 788 36 HOH HOH . 
R 9 HOH A 89 789 2 HOH HOH . 
R 9 HOH A 90 790 81 HOH HOH . 
R 9 HOH A 91 791 59 HOH HOH . 
R 9 HOH A 92 792 93 HOH HOH . 
R 9 HOH A 93 793 137 HOH HOH . 
R 9 HOH A 94 794 7 HOH HOH . 
R 9 HOH A 95 795 120 HOH HOH . 
R 9 HOH A 96 796 134 HOH HOH . 
R 9 HOH A 97 797 70 HOH HOH . 
R 9 HOH A 98 798 71 HOH HOH . 
R 9 HOH A 99 799 131 HOH HOH . 
R 9 HOH A 100 800 133 HOH HOH . 
R 9 HOH A 101 801 26 HOH HOH . 
R 9 HOH A 102 802 141 HOH HOH . 
R 9 HOH A 103 803 132 HOH HOH . 
R 9 HOH A 104 804 119 HOH HOH . 
R 9 HOH A 105 805 108 HOH HOH . 
R 9 HOH A 106 806 145 HOH HOH . 
R 9 HOH A 107 807 152 HOH HOH . 
R 9 HOH A 108 808 142 HOH HOH . 
R 9 HOH A 109 809 40 HOH HOH . 
R 9 HOH A 110 810 8 HOH HOH . 
R 9 HOH A 111 811 58 HOH HOH . 
R 9 HOH A 112 812 140 HOH HOH . 
R 9 HOH A 113 813 126 HOH HOH . 
R 9 HOH A 114 814 73 HOH HOH . 
R 9 HOH A 115 815 130 HOH HOH . 
R 9 HOH A 116 816 150 HOH HOH . 
R 9 HOH A 117 817 98 HOH HOH . 
R 9 HOH A 118 818 121 HOH HOH . 
R 9 HOH A 119 819 136 HOH HOH . 
R 9 HOH A 120 820 80 HOH HOH . 
R 9 HOH A 121 821 43 HOH HOH . 
R 9 HOH A 122 822 44 HOH HOH . 
R 9 HOH A 123 823 153 HOH HOH . 
R 9 HOH A 124 824 49 HOH HOH . 
R 9 HOH A 125 825 30 HOH HOH . 
R 9 HOH A 126 826 88 HOH HOH . 
R 9 HOH A 127 827 24 HOH HOH . 
R 9 HOH A 128 828 125 HOH HOH . 
R 9 HOH A 129 829 75 HOH HOH . 
R 9 HOH A 130 830 61 HOH HOH . 
R 9 HOH A 131 831 143 HOH HOH . 
R 9 HOH A 132 832 72 HOH HOH . 
R 9 HOH A 133 833 18 HOH HOH . 
R 9 HOH A 134 834 20 HOH HOH . 
R 9 HOH A 135 835 13 HOH HOH . 
R 9 HOH A 136 836 46 HOH HOH . 
R 9 HOH A 137 837 149 HOH HOH . 
R 9 HOH A 138 838 118 HOH HOH . 
R 9 HOH A 139 839 109 HOH HOH . 
R 9 HOH A 140 840 107 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . Q 8 53.933 -3.154 12.731 1 85.51 ? S DMS 616 A 1 
HETATM 2 O O DMS . . . Q 8 54.587 -3.844 11.575 1 67.22 ? O DMS 616 A 1 
HETATM 3 C C1 DMS . . . Q 8 55.161 -2.135 13.589 1 51.61 ? C1 DMS 616 A 1 
HETATM 4 C C2 DMS . . . Q 8 53.571 -4.361 14.035 1 48.53 ? C2 DMS 616 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           359 
_model_server_stats.encode_time_ms          28 
_model_server_stats.element_count           4 
#