data_8K2H # _model_server_result.job_id cI_aEqevL3jWxnDklj0AHA _model_server_result.datetime_utc '2024-11-27 09:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k2h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8K2H # _exptl.entry_id 8K2H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.258 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K2H _cell.length_a 68.852 _cell.length_b 134.036 _cell.length_c 149.969 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K2H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C8 H13 N O4 S' _chem_comp.formula_weight 219.258 _chem_comp.id GNL _chem_comp.mon_nstd_flag . _chem_comp.name (3aR,5R,6R,7R,7aR)-5-(hydroxymethyl)-2-methyl-5,6,7,7a-tetrahydro-3aH-pyrano[3,2-d][1,3]thiazole-6,7-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 GNL sing 129 n n C1 C2 GNL sing 130 n n C1 O5 GNL sing 131 n n S1 C7 GNL sing 132 n n C2 N2 GNL sing 133 n n C2 C3 GNL sing 134 n n N2 C7 GNL doub 135 n n C3 O3 GNL sing 136 n n C3 C4 GNL sing 137 n n C4 O4 GNL sing 138 n n C4 C5 GNL sing 139 n n C5 O5 GNL sing 140 n n C5 C6 GNL sing 141 n n C6 O6 GNL sing 142 n n C7 C8 GNL sing 143 n n C1 H1 GNL sing 144 n n C2 H2 GNL sing 145 n n C3 H3 GNL sing 146 n n O3 HO3 GNL sing 147 n n C4 H4 GNL sing 148 n n O4 HO4 GNL sing 149 n n C5 H5 GNL sing 150 n n C6 H6 GNL sing 151 n n C6 H6A GNL sing 152 n n O6 HO6 GNL sing 153 n n C8 H8 GNL sing 154 n n C8 H8A GNL sing 155 n n C8 H8B GNL sing 156 n n # _atom_sites.entry_id 8K2H _atom_sites.fract_transf_matrix[1][1] 0.014524 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006668 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GNL B 1 701 701 GNL GNL . D 3 PEG B 1 702 702 PEG PEG . E 2 GNL A 1 701 701 GNL GNL . F 3 PEG A 1 702 702 PEG PEG . G 4 CL A 1 703 1 CL CL . H 5 HOH B 1 801 184 HOH HOH . H 5 HOH B 2 802 25 HOH HOH . H 5 HOH B 3 803 155 HOH HOH . H 5 HOH B 4 804 43 HOH HOH . H 5 HOH B 5 805 104 HOH HOH . H 5 HOH B 6 806 271 HOH HOH . H 5 HOH B 7 807 116 HOH HOH . H 5 HOH B 8 808 259 HOH HOH . H 5 HOH B 9 809 229 HOH HOH . H 5 HOH B 10 810 161 HOH HOH . H 5 HOH B 11 811 163 HOH HOH . H 5 HOH B 12 812 81 HOH HOH . H 5 HOH B 13 813 208 HOH HOH . H 5 HOH B 14 814 275 HOH HOH . H 5 HOH B 15 815 142 HOH HOH . H 5 HOH B 16 816 178 HOH HOH . H 5 HOH B 17 817 190 HOH HOH . H 5 HOH B 18 818 95 HOH HOH . H 5 HOH B 19 819 24 HOH HOH . H 5 HOH B 20 820 122 HOH HOH . H 5 HOH B 21 821 56 HOH HOH . H 5 HOH B 22 822 19 HOH HOH . H 5 HOH B 23 823 75 HOH HOH . H 5 HOH B 24 824 194 HOH HOH . H 5 HOH B 25 825 133 HOH HOH . H 5 HOH B 26 826 185 HOH HOH . H 5 HOH B 27 827 242 HOH HOH . H 5 HOH B 28 828 180 HOH HOH . H 5 HOH B 29 829 57 HOH HOH . H 5 HOH B 30 830 211 HOH HOH . H 5 HOH B 31 831 196 HOH HOH . H 5 HOH B 32 832 35 HOH HOH . H 5 HOH B 33 833 188 HOH HOH . H 5 HOH B 34 834 210 HOH HOH . H 5 HOH B 35 835 159 HOH HOH . H 5 HOH B 36 836 152 HOH HOH . H 5 HOH B 37 837 192 HOH HOH . H 5 HOH B 38 838 121 HOH HOH . H 5 HOH B 39 839 149 HOH HOH . H 5 HOH B 40 840 272 HOH HOH . H 5 HOH B 41 841 253 HOH HOH . H 5 HOH B 42 842 42 HOH HOH . H 5 HOH B 43 843 139 HOH HOH . H 5 HOH B 44 844 151 HOH HOH . H 5 HOH B 45 845 134 HOH HOH . H 5 HOH B 46 846 277 HOH HOH . H 5 HOH B 47 847 50 HOH HOH . H 5 HOH B 48 848 45 HOH HOH . H 5 HOH B 49 849 63 HOH HOH . H 5 HOH B 50 850 274 HOH HOH . H 5 HOH B 51 851 181 HOH HOH . H 5 HOH B 52 852 98 HOH HOH . H 5 HOH B 53 853 209 HOH HOH . H 5 HOH B 54 854 11 HOH HOH . H 5 HOH B 55 855 154 HOH HOH . H 5 HOH B 56 856 182 HOH HOH . H 5 HOH B 57 857 115 HOH HOH . H 5 HOH B 58 858 49 HOH HOH . H 5 HOH B 59 859 47 HOH HOH . H 5 HOH B 60 860 153 HOH HOH . H 5 HOH B 61 861 18 HOH HOH . H 5 HOH B 62 862 61 HOH HOH . H 5 HOH B 63 863 250 HOH HOH . H 5 HOH B 64 864 132 HOH HOH . H 5 HOH B 65 865 265 HOH HOH . H 5 HOH B 66 866 260 HOH HOH . H 5 HOH B 67 867 26 HOH HOH . H 5 HOH B 68 868 69 HOH HOH . H 5 HOH B 69 869 3 HOH HOH . H 5 HOH B 70 870 186 HOH HOH . H 5 HOH B 71 871 60 HOH HOH . H 5 HOH B 72 872 102 HOH HOH . H 5 HOH B 73 873 257 HOH HOH . H 5 HOH B 74 874 248 HOH HOH . H 5 HOH B 75 875 125 HOH HOH . H 5 HOH B 76 876 80 HOH HOH . H 5 HOH B 77 877 175 HOH HOH . H 5 HOH B 78 878 247 HOH HOH . H 5 HOH B 79 879 147 HOH HOH . H 5 HOH B 80 880 214 HOH HOH . H 5 HOH B 81 881 187 HOH HOH . H 5 HOH B 82 882 141 HOH HOH . H 5 HOH B 83 883 262 HOH HOH . H 5 HOH B 84 884 48 HOH HOH . H 5 HOH B 85 885 127 HOH HOH . H 5 HOH B 86 886 238 HOH HOH . H 5 HOH B 87 887 86 HOH HOH . H 5 HOH B 88 888 64 HOH HOH . H 5 HOH B 89 889 22 HOH HOH . H 5 HOH B 90 890 245 HOH HOH . H 5 HOH B 91 891 225 HOH HOH . H 5 HOH B 92 892 179 HOH HOH . H 5 HOH B 93 893 72 HOH HOH . H 5 HOH B 94 894 40 HOH HOH . H 5 HOH B 95 895 243 HOH HOH . H 5 HOH B 96 896 129 HOH HOH . H 5 HOH B 97 897 240 HOH HOH . H 5 HOH B 98 898 246 HOH HOH . H 5 HOH B 99 899 4 HOH HOH . H 5 HOH B 100 900 189 HOH HOH . H 5 HOH B 101 901 46 HOH HOH . H 5 HOH B 102 902 258 HOH HOH . H 5 HOH B 103 903 124 HOH HOH . H 5 HOH B 104 904 101 HOH HOH . H 5 HOH B 105 905 39 HOH HOH . H 5 HOH B 106 906 278 HOH HOH . H 5 HOH B 107 907 252 HOH HOH . H 5 HOH B 108 908 227 HOH HOH . H 5 HOH B 109 909 29 HOH HOH . H 5 HOH B 110 910 84 HOH HOH . H 5 HOH B 111 911 90 HOH HOH . H 5 HOH B 112 912 148 HOH HOH . H 5 HOH B 113 913 224 HOH HOH . H 5 HOH B 114 914 177 HOH HOH . H 5 HOH B 115 915 117 HOH HOH . H 5 HOH B 116 916 221 HOH HOH . H 5 HOH B 117 917 74 HOH HOH . H 5 HOH B 118 918 82 HOH HOH . H 5 HOH B 119 919 273 HOH HOH . H 5 HOH B 120 920 205 HOH HOH . H 5 HOH B 121 921 249 HOH HOH . H 5 HOH B 122 922 15 HOH HOH . H 5 HOH B 123 923 16 HOH HOH . H 5 HOH B 124 924 167 HOH HOH . H 5 HOH B 125 925 200 HOH HOH . H 5 HOH B 126 926 20 HOH HOH . H 5 HOH B 127 927 27 HOH HOH . H 5 HOH B 128 928 144 HOH HOH . H 5 HOH B 129 929 231 HOH HOH . H 5 HOH B 130 930 233 HOH HOH . H 5 HOH B 131 931 244 HOH HOH . H 5 HOH B 132 932 136 HOH HOH . H 5 HOH B 133 933 107 HOH HOH . H 5 HOH B 134 934 236 HOH HOH . H 5 HOH B 135 935 131 HOH HOH . H 5 HOH B 136 936 232 HOH HOH . H 5 HOH B 137 937 114 HOH HOH . H 5 HOH B 138 938 14 HOH HOH . H 5 HOH B 139 939 128 HOH HOH . H 5 HOH B 140 940 37 HOH HOH . H 5 HOH B 141 941 195 HOH HOH . H 5 HOH B 142 942 10 HOH HOH . H 5 HOH B 143 943 6 HOH HOH . H 5 HOH B 144 944 143 HOH HOH . H 5 HOH B 145 945 270 HOH HOH . H 5 HOH B 146 946 2 HOH HOH . H 5 HOH B 147 947 17 HOH HOH . H 5 HOH B 148 948 79 HOH HOH . H 5 HOH B 149 949 169 HOH HOH . H 5 HOH B 150 950 83 HOH HOH . H 5 HOH B 151 951 251 HOH HOH . H 5 HOH B 152 952 168 HOH HOH . H 5 HOH B 153 953 164 HOH HOH . H 5 HOH B 154 954 241 HOH HOH . I 5 HOH A 1 801 228 HOH HOH . I 5 HOH A 2 802 52 HOH HOH . I 5 HOH A 3 803 113 HOH HOH . I 5 HOH A 4 804 202 HOH HOH . I 5 HOH A 5 805 165 HOH HOH . I 5 HOH A 6 806 53 HOH HOH . I 5 HOH A 7 807 55 HOH HOH . I 5 HOH A 8 808 216 HOH HOH . I 5 HOH A 9 809 89 HOH HOH . I 5 HOH A 10 810 111 HOH HOH . I 5 HOH A 11 811 276 HOH HOH . I 5 HOH A 12 812 156 HOH HOH . I 5 HOH A 13 813 204 HOH HOH . I 5 HOH A 14 814 160 HOH HOH . I 5 HOH A 15 815 191 HOH HOH . I 5 HOH A 16 816 207 HOH HOH . I 5 HOH A 17 817 34 HOH HOH . I 5 HOH A 18 818 172 HOH HOH . I 5 HOH A 19 819 162 HOH HOH . I 5 HOH A 20 820 267 HOH HOH . I 5 HOH A 21 821 226 HOH HOH . I 5 HOH A 22 822 96 HOH HOH . I 5 HOH A 23 823 173 HOH HOH . I 5 HOH A 24 824 105 HOH HOH . I 5 HOH A 25 825 32 HOH HOH . I 5 HOH A 26 826 91 HOH HOH . I 5 HOH A 27 827 76 HOH HOH . I 5 HOH A 28 828 110 HOH HOH . I 5 HOH A 29 829 41 HOH HOH . I 5 HOH A 30 830 119 HOH HOH . I 5 HOH A 31 831 218 HOH HOH . I 5 HOH A 32 832 67 HOH HOH . I 5 HOH A 33 833 198 HOH HOH . I 5 HOH A 34 834 174 HOH HOH . I 5 HOH A 35 835 59 HOH HOH . I 5 HOH A 36 836 100 HOH HOH . I 5 HOH A 37 837 234 HOH HOH . I 5 HOH A 38 838 97 HOH HOH . I 5 HOH A 39 839 203 HOH HOH . I 5 HOH A 40 840 213 HOH HOH . I 5 HOH A 41 841 219 HOH HOH . I 5 HOH A 42 842 166 HOH HOH . I 5 HOH A 43 843 255 HOH HOH . I 5 HOH A 44 844 146 HOH HOH . I 5 HOH A 45 845 206 HOH HOH . I 5 HOH A 46 846 145 HOH HOH . I 5 HOH A 47 847 65 HOH HOH . I 5 HOH A 48 848 126 HOH HOH . I 5 HOH A 49 849 130 HOH HOH . I 5 HOH A 50 850 220 HOH HOH . I 5 HOH A 51 851 264 HOH HOH . I 5 HOH A 52 852 7 HOH HOH . I 5 HOH A 53 853 261 HOH HOH . I 5 HOH A 54 854 235 HOH HOH . I 5 HOH A 55 855 85 HOH HOH . I 5 HOH A 56 856 70 HOH HOH . I 5 HOH A 57 857 176 HOH HOH . I 5 HOH A 58 858 12 HOH HOH . I 5 HOH A 59 859 138 HOH HOH . I 5 HOH A 60 860 106 HOH HOH . I 5 HOH A 61 861 93 HOH HOH . I 5 HOH A 62 862 5 HOH HOH . I 5 HOH A 63 863 71 HOH HOH . I 5 HOH A 64 864 201 HOH HOH . I 5 HOH A 65 865 33 HOH HOH . I 5 HOH A 66 866 217 HOH HOH . I 5 HOH A 67 867 77 HOH HOH . I 5 HOH A 68 868 44 HOH HOH . I 5 HOH A 69 869 254 HOH HOH . I 5 HOH A 70 870 120 HOH HOH . I 5 HOH A 71 871 31 HOH HOH . I 5 HOH A 72 872 62 HOH HOH . I 5 HOH A 73 873 215 HOH HOH . I 5 HOH A 74 874 212 HOH HOH . I 5 HOH A 75 875 36 HOH HOH . I 5 HOH A 76 876 197 HOH HOH . I 5 HOH A 77 877 92 HOH HOH . I 5 HOH A 78 878 158 HOH HOH . I 5 HOH A 79 879 78 HOH HOH . I 5 HOH A 80 880 279 HOH HOH . I 5 HOH A 81 881 30 HOH HOH . I 5 HOH A 82 882 118 HOH HOH . I 5 HOH A 83 883 54 HOH HOH . I 5 HOH A 84 884 99 HOH HOH . I 5 HOH A 85 885 199 HOH HOH . I 5 HOH A 86 886 109 HOH HOH . I 5 HOH A 87 887 68 HOH HOH . I 5 HOH A 88 888 183 HOH HOH . I 5 HOH A 89 889 135 HOH HOH . I 5 HOH A 90 890 38 HOH HOH . I 5 HOH A 91 891 112 HOH HOH . I 5 HOH A 92 892 8 HOH HOH . I 5 HOH A 93 893 108 HOH HOH . I 5 HOH A 94 894 73 HOH HOH . I 5 HOH A 95 895 268 HOH HOH . I 5 HOH A 96 896 193 HOH HOH . I 5 HOH A 97 897 87 HOH HOH . I 5 HOH A 98 898 263 HOH HOH . I 5 HOH A 99 899 23 HOH HOH . I 5 HOH A 100 900 269 HOH HOH . I 5 HOH A 101 901 58 HOH HOH . I 5 HOH A 102 902 230 HOH HOH . I 5 HOH A 103 903 256 HOH HOH . I 5 HOH A 104 904 171 HOH HOH . I 5 HOH A 105 905 123 HOH HOH . I 5 HOH A 106 906 266 HOH HOH . I 5 HOH A 107 907 239 HOH HOH . I 5 HOH A 108 908 66 HOH HOH . I 5 HOH A 109 909 51 HOH HOH . I 5 HOH A 110 910 137 HOH HOH . I 5 HOH A 111 911 103 HOH HOH . I 5 HOH A 112 912 9 HOH HOH . I 5 HOH A 113 913 13 HOH HOH . I 5 HOH A 114 914 94 HOH HOH . I 5 HOH A 115 915 222 HOH HOH . I 5 HOH A 116 916 223 HOH HOH . I 5 HOH A 117 917 237 HOH HOH . I 5 HOH A 118 918 21 HOH HOH . I 5 HOH A 119 919 1 HOH HOH . I 5 HOH A 120 920 150 HOH HOH . I 5 HOH A 121 921 28 HOH HOH . I 5 HOH A 122 922 157 HOH HOH . I 5 HOH A 123 923 170 HOH HOH . I 5 HOH A 124 924 88 HOH HOH . I 5 HOH A 125 925 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GNL . . . C 2 -30.068 -38.179 -47.36 1 29.69 ? C1 GNL 701 B 1 HETATM 2 S S1 GNL . . . C 2 -29.139 -37.588 -45.887 1 31.38 ? S1 GNL 701 B 1 HETATM 3 C C2 GNL . . . C 2 -31.475 -38.552 -46.805 1 32.89 ? C2 GNL 701 B 1 HETATM 4 N N2 GNL . . . C 2 -31.787 -37.506 -45.792 1 35.14 ? N2 GNL 701 B 1 HETATM 5 C C3 GNL . . . C 2 -31.57 -39.925 -46.127 1 31.67 ? C3 GNL 701 B 1 HETATM 6 O O3 GNL . . . C 2 -32.884 -40.455 -45.843 1 35.32 ? O3 GNL 701 B 1 HETATM 7 C C4 GNL . . . C 2 -30.855 -40.948 -47.006 1 33.22 ? C4 GNL 701 B 1 HETATM 8 O O4 GNL . . . C 2 -31.568 -41.171 -48.204 1 31.92 ? O4 GNL 701 B 1 HETATM 9 C C5 GNL . . . C 2 -29.442 -40.499 -47.315 1 31.74 ? C5 GNL 701 B 1 HETATM 10 O O5 GNL . . . C 2 -29.435 -39.238 -47.997 1 34.33 ? O5 GNL 701 B 1 HETATM 11 C C6 GNL . . . C 2 -28.662 -41.482 -48.17 1 34.87 ? C6 GNL 701 B 1 HETATM 12 O O6 GNL . . . C 2 -27.376 -41.04 -48.428 1 32.26 ? O6 GNL 701 B 1 HETATM 13 C C7 GNL . . . C 2 -30.739 -37.074 -45.167 1 33.22 ? C7 GNL 701 B 1 HETATM 14 C C8 GNL . . . C 2 -30.769 -36.143 -44.008 1 29.84 ? C8 GNL 701 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #