data_8K3S
#
_model_server_result.job_id            LiS5lroAVYKyVvvij_zQpQ 
_model_server_result.datetime_utc      '2024-11-09 02:15:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k3s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":802}' 
#
_entry.id    8K3S 
#
_exptl.entry_id    8K3S 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K3S 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K3S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 183 A CYS 331 1_555 A SG CYS 196 A CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 B SG CYS 183 B CYS 331 1_555 B SG CYS 196 B CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf3 C SG CYS 183 C CYS 331 1_555 C SG CYS 196 C CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 D SG CYS 183 D CYS 331 1_555 D SG CYS 196 D CYS 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A ND2 ASN 180 A ASN 328 1_555 F C1 NAG . A NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale2 A ND2 ASN 214 A ASN 362 1_555 G C1 NAG . A NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale3 A ND2 ASN 227 A ASN 375 1_555 H C1 NAG . A NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? 
covale ? covale4 B ND2 ASN 180 B ASN 328 1_555 K C1 NAG . B NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale5 B ND2 ASN 214 B ASN 362 1_555 L C1 NAG . B NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale6 B ND2 ASN 227 B ASN 375 1_555 M C1 NAG . B NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale7 C ND2 ASN 180 C ASN 328 1_555 O C1 NAG . C NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale8 C ND2 ASN 214 C ASN 362 1_555 P C1 NAG . C NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale9 C ND2 ASN 227 C ASN 375 1_555 Q C1 NAG . C NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
covale ? covale10 D ND2 ASN 180 D ASN 328 1_555 S C1 NAG . D NAG 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? 
covale ? covale11 D ND2 ASN 214 D ASN 362 1_555 T C1 NAG . D NAG 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? 
covale ? covale12 D ND2 ASN 227 D ASN 375 1_555 U C1 NAG . D NAG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? 
metalc ? metalc1 A O LEU 493 A LEU 641 1_555 I CA CA . A CA 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.011 ? 
metalc ? metalc2 I CA CA . A CA 805 1_555 B O LEU 493 B LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? 
metalc ? metalc3 I CA CA . A CA 805 1_555 C O LEU 493 C LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? 
metalc ? metalc4 I CA CA . A CA 805 1_555 D O LEU 493 D LEU 641 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 235 n n 
C1 O1 NAG sing 236 n n 
C1 O5 NAG sing 237 n n 
C1 H1 NAG sing 238 n n 
C2 C3 NAG sing 239 n n 
C2 N2 NAG sing 240 n n 
C2 H2 NAG sing 241 n n 
C3 C4 NAG sing 242 n n 
C3 O3 NAG sing 243 n n 
C3 H3 NAG sing 244 n n 
C4 C5 NAG sing 245 n n 
C4 O4 NAG sing 246 n n 
C4 H4 NAG sing 247 n n 
C5 C6 NAG sing 248 n n 
C5 O5 NAG sing 249 n n 
C5 H5 NAG sing 250 n n 
C6 O6 NAG sing 251 n n 
C6 H61 NAG sing 252 n n 
C6 H62 NAG sing 253 n n 
C7 C8 NAG sing 254 n n 
C7 N2 NAG sing 255 n n 
C7 O7 NAG doub 256 n n 
C8 H81 NAG sing 257 n n 
C8 H82 NAG sing 258 n n 
C8 H83 NAG sing 259 n n 
N2 HN2 NAG sing 260 n n 
O1 HO1 NAG sing 261 n n 
O3 HO3 NAG sing 262 n n 
O4 HO4 NAG sing 263 n n 
O6 HO6 NAG sing 264 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8K3S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 PEF A 1 801 1000 PEF LIG . 
F 3 NAG A 1 802 1001 NAG NAG . 
G 3 NAG A 1 803 1002 NAG NAG . 
H 3 NAG A 1 804 1003 NAG NAG . 
I 4 CA A 1 805 101 CA CA . 
J 2 PEF B 1 801 999 PEF LIG . 
K 3 NAG B 1 802 1004 NAG NAG . 
L 3 NAG B 1 803 1005 NAG NAG . 
M 3 NAG B 1 804 1006 NAG NAG . 
N 2 PEF C 1 801 998 PEF LIG . 
O 3 NAG C 1 802 1007 NAG NAG . 
P 3 NAG C 1 803 1008 NAG NAG . 
Q 3 NAG C 1 804 1009 NAG NAG . 
R 2 PEF D 1 801 997 PEF LIG . 
S 3 NAG D 1 802 1010 NAG NAG . 
T 3 NAG D 1 803 1011 NAG NAG . 
U 3 NAG D 1 804 1012 NAG NAG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . O 3 113.367 170.885 177.406 1 72.03 ? C1 NAG 802 C 1 
HETATM 2 C C2 NAG . . . O 3 113.259 170.878 178.93 1 72.03 ? C2 NAG 802 C 1 
HETATM 3 C C3 NAG . . . O 3 111.794 170.914 179.356 1 72.03 ? C3 NAG 802 C 1 
HETATM 4 C C4 NAG . . . O 3 111.082 172.092 178.706 1 72.03 ? C4 NAG 802 C 1 
HETATM 5 C C5 NAG . . . O 3 111.27 172.047 177.193 1 72.03 ? C5 NAG 802 C 1 
HETATM 6 C C6 NAG . . . O 3 110.685 173.248 176.488 1 72.03 ? C6 NAG 802 C 1 
HETATM 7 C C7 NAG . . . O 3 115.102 169.787 180.128 1 72.03 ? C7 NAG 802 C 1 
HETATM 8 C C8 NAG . . . O 3 115.645 168.49 180.649 1 72.03 ? C8 NAG 802 C 1 
HETATM 9 N N2 NAG . . . O 3 113.927 169.717 179.495 1 72.03 ? N2 NAG 802 C 1 
HETATM 10 O O3 NAG . . . O 3 111.713 171.017 180.773 1 72.03 ? O3 NAG 802 C 1 
HETATM 11 O O4 NAG . . . O 3 109.693 172.051 179.011 1 72.03 ? O4 NAG 802 C 1 
HETATM 12 O O5 NAG . . . O 3 112.67 172.023 176.878 1 72.03 ? O5 NAG 802 C 1 
HETATM 13 O O6 NAG . . . O 3 109.512 173.713 177.142 1 72.03 ? O6 NAG 802 C 1 
HETATM 14 O O7 NAG . . . O 3 115.7 170.848 180.273 1 72.03 ? O7 NAG 802 C 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#