data_8K40
#
_model_server_result.job_id            EV9rfgl0Je3oBEltqWgffw 
_model_server_result.datetime_utc      '2024-10-19 09:38:25' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k40 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":501}' 
#
_entry.id    8K40 
#
_exptl.entry_id    8K40 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K40 
_cell.length_a            78.19 
_cell.length_b            105.82 
_cell.length_c            126.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K40 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 A CYS 41 1_555 A SG CYS 54 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 B SG CYS 49 B CYS 41 1_555 B SG CYS 54 B CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     8K40 
_atom_sites.fract_transf_matrix[1][1]    0.012789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 501 FAD FAD . 
D 2 FAD B 1 501 501 FAD FAD . 
E 3 HOH A 1 601 36 HOH HOH . 
E 3 HOH A 2 602 27 HOH HOH . 
E 3 HOH A 3 603 16 HOH HOH . 
E 3 HOH A 4 604 21 HOH HOH . 
E 3 HOH A 5 605 14 HOH HOH . 
E 3 HOH A 6 606 15 HOH HOH . 
E 3 HOH A 7 607 2 HOH HOH . 
E 3 HOH A 8 608 3 HOH HOH . 
E 3 HOH A 9 609 35 HOH HOH . 
E 3 HOH A 10 610 6 HOH HOH . 
E 3 HOH A 11 611 31 HOH HOH . 
E 3 HOH A 12 612 19 HOH HOH . 
E 3 HOH A 13 613 20 HOH HOH . 
E 3 HOH A 14 614 37 HOH HOH . 
E 3 HOH A 15 615 23 HOH HOH . 
E 3 HOH A 16 616 39 HOH HOH . 
E 3 HOH A 17 617 34 HOH HOH . 
E 3 HOH A 18 618 25 HOH HOH . 
E 3 HOH A 19 619 9 HOH HOH . 
E 3 HOH A 20 620 29 HOH HOH . 
E 3 HOH A 21 621 26 HOH HOH . 
E 3 HOH A 22 622 24 HOH HOH . 
E 3 HOH A 23 623 22 HOH HOH . 
E 3 HOH A 24 624 40 HOH HOH . 
E 3 HOH A 25 625 10 HOH HOH . 
E 3 HOH A 26 626 38 HOH HOH . 
F 3 HOH B 1 601 28 HOH HOH . 
F 3 HOH B 2 602 12 HOH HOH . 
F 3 HOH B 3 603 33 HOH HOH . 
F 3 HOH B 4 604 32 HOH HOH . 
F 3 HOH B 5 605 4 HOH HOH . 
F 3 HOH B 6 606 18 HOH HOH . 
F 3 HOH B 7 607 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . C 2 10.739 -27.101 -29.389 1 70.55 ? PA FAD 501 A 1 
HETATM 2 O O1A FAD . . . C 2 11.987 -26.335 -29.676 1 72.06 ? O1A FAD 501 A 1 
HETATM 3 O O2A FAD . . . C 2 9.763 -27.347 -30.498 1 63.78 ? O2A FAD 501 A 1 
HETATM 4 O O5B FAD . . . C 2 11.13 -28.506 -28.72 1 77.27 ? O5B FAD 501 A 1 
HETATM 5 C C5B FAD . . . C 2 10.128 -29.412 -28.21 1 71.61 ? C5B FAD 501 A 1 
HETATM 6 C C4B FAD . . . C 2 10.576 -30.825 -28.478 1 66.99 ? C4B FAD 501 A 1 
HETATM 7 O O4B FAD . . . C 2 9.806 -31.711 -27.633 1 72.9 ? O4B FAD 501 A 1 
HETATM 8 C C3B FAD . . . C 2 10.388 -31.337 -29.913 1 66.19 ? C3B FAD 501 A 1 
HETATM 9 O O3B FAD . . . C 2 11.632 -31.814 -30.418 1 69.7 ? O3B FAD 501 A 1 
HETATM 10 C C2B FAD . . . C 2 9.296 -32.407 -29.78 1 66.53 ? C2B FAD 501 A 1 
HETATM 11 O O2B FAD . . . C 2 9.47 -33.518 -30.624 1 72.04 ? O2B FAD 501 A 1 
HETATM 12 C C1B FAD . . . C 2 9.467 -32.874 -28.347 1 72.83 ? C1B FAD 501 A 1 
HETATM 13 N N9A FAD . . . C 2 8.301 -33.416 -27.687 1 84.58 ? N9A FAD 501 A 1 
HETATM 14 C C8A FAD . . . C 2 7.067 -32.827 -27.595 1 96.79 ? C8A FAD 501 A 1 
HETATM 15 N N7A FAD . . . C 2 6.234 -33.511 -26.846 1 101.24 ? N7A FAD 501 A 1 
HETATM 16 C C5A FAD . . . C 2 6.976 -34.593 -26.391 1 99.79 ? C5A FAD 501 A 1 
HETATM 17 C C6A FAD . . . C 2 6.657 -35.673 -25.547 1 88.14 ? C6A FAD 501 A 1 
HETATM 18 N N6A FAD . . . C 2 5.479 -35.826 -24.954 1 78.59 ? N6A FAD 501 A 1 
HETATM 19 N N1A FAD . . . C 2 7.642 -36.562 -25.287 1 84.29 ? N1A FAD 501 A 1 
HETATM 20 C C2A FAD . . . C 2 8.832 -36.393 -25.879 1 84.26 ? C2A FAD 501 A 1 
HETATM 21 N N3A FAD . . . C 2 9.248 -35.416 -26.68 1 87.63 ? N3A FAD 501 A 1 
HETATM 22 C C4A FAD . . . C 2 8.259 -34.536 -26.899 1 94.17 ? C4A FAD 501 A 1 
HETATM 23 N N1 FAD . . . C 2 10.173 -18.468 -33.449 1 55.36 ? N1 FAD 501 A 1 
HETATM 24 C C2 FAD . . . C 2 10.987 -17.422 -33.711 1 58.77 ? C2 FAD 501 A 1 
HETATM 25 O O2 FAD . . . C 2 11.539 -16.777 -32.799 1 58.81 ? O2 FAD 501 A 1 
HETATM 26 N N3 FAD . . . C 2 11.22 -17.002 -34.977 1 56.26 ? N3 FAD 501 A 1 
HETATM 27 C C4 FAD . . . C 2 10.648 -17.585 -36.067 1 55.16 ? C4 FAD 501 A 1 
HETATM 28 O O4 FAD . . . C 2 10.921 -17.14 -37.176 1 61.92 ? O4 FAD 501 A 1 
HETATM 29 C C4X FAD . . . C 2 9.82 -18.721 -35.844 1 53.11 ? C4X FAD 501 A 1 
HETATM 30 N N5 FAD . . . C 2 9.289 -19.352 -36.871 1 49.93 ? N5 FAD 501 A 1 
HETATM 31 C C5X FAD . . . C 2 8.53 -20.467 -36.599 1 51.05 ? C5X FAD 501 A 1 
HETATM 32 C C6 FAD . . . C 2 7.963 -21.181 -37.666 1 49.99 ? C6 FAD 501 A 1 
HETATM 33 C C7 FAD . . . C 2 7.19 -22.297 -37.467 1 48.43 ? C7 FAD 501 A 1 
HETATM 34 C C7M FAD . . . C 2 6.641 -23.051 -38.656 1 52.86 ? C7M FAD 501 A 1 
HETATM 35 C C8 FAD . . . C 2 6.949 -22.742 -36.151 1 51.16 ? C8 FAD 501 A 1 
HETATM 36 C C8M FAD . . . C 2 6.127 -23.976 -35.885 1 49.04 ? C8M FAD 501 A 1 
HETATM 37 C C9 FAD . . . C 2 7.484 -22.053 -35.09 1 52.49 ? C9 FAD 501 A 1 
HETATM 38 C C9A FAD . . . C 2 8.284 -20.918 -35.288 1 53.36 ? C9A FAD 501 A 1 
HETATM 39 N N10 FAD . . . C 2 8.83 -20.198 -34.233 1 52.57 ? N10 FAD 501 A 1 
HETATM 40 C C10 FAD . . . C 2 9.628 -19.099 -34.466 1 50.98 ? C10 FAD 501 A 1 
HETATM 41 C C1' FAD . . . C 2 8.591 -20.651 -32.858 1 53.41 ? C1' FAD 501 A 1 
HETATM 42 C C2' FAD . . . C 2 9.733 -21.441 -32.338 1 57.97 ? C2' FAD 501 A 1 
HETATM 43 O O2' FAD . . . C 2 9.95 -22.582 -33.165 1 61.32 ? O2' FAD 501 A 1 
HETATM 44 C C3' FAD . . . C 2 9.393 -21.864 -30.914 1 64.62 ? C3' FAD 501 A 1 
HETATM 45 O O3' FAD . . . C 2 9.033 -20.731 -30.115 1 67.8 ? O3' FAD 501 A 1 
HETATM 46 C C4' FAD . . . C 2 10.545 -22.598 -30.238 1 65.03 ? C4' FAD 501 A 1 
HETATM 47 O O4' FAD . . . C 2 11.132 -23.512 -31.161 1 71.62 ? O4' FAD 501 A 1 
HETATM 48 C C5' FAD . . . C 2 10.072 -23.345 -29.019 1 68.58 ? C5' FAD 501 A 1 
HETATM 49 O O5' FAD . . . C 2 11.079 -24.267 -28.582 1 67.77 ? O5' FAD 501 A 1 
HETATM 50 P P FAD . . . C 2 10.764 -25.199 -27.333 1 66.71 ? P FAD 501 A 1 
HETATM 51 O O1P FAD . . . C 2 12.109 -25.647 -26.86 1 82.39 ? O1P FAD 501 A 1 
HETATM 52 O O2P FAD . . . C 2 9.812 -24.536 -26.37 1 59.42 ? O2P FAD 501 A 1 
HETATM 53 O O3P FAD . . . C 2 10.059 -26.369 -28.147 1 53.13 ? O3P FAD 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#