data_8K40
#
_model_server_result.job_id            4UawidwdC1DHYGQUXlYFxQ 
_model_server_result.datetime_utc      '2024-10-19 09:34:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k40 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    8K40 
#
_exptl.entry_id    8K40 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8K40 
_cell.length_a            78.19 
_cell.length_b            105.82 
_cell.length_c            126.82 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K40 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 49 A CYS 41 1_555 A SG CYS 54 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
disulf ? disulf2 B SG CYS 49 B CYS 41 1_555 B SG CYS 54 B CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 83 n n 
PA O2A FAD sing 84 n n 
PA O5B FAD sing 85 n n 
PA O3P FAD sing 86 n n 
O2A HOA2 FAD sing 87 n n 
O5B C5B FAD sing 88 n n 
C5B C4B FAD sing 89 n n 
C5B H51A FAD sing 90 n n 
C5B H52A FAD sing 91 n n 
C4B O4B FAD sing 92 n n 
C4B C3B FAD sing 93 n n 
C4B H4B FAD sing 94 n n 
O4B C1B FAD sing 95 n n 
C3B O3B FAD sing 96 n n 
C3B C2B FAD sing 97 n n 
C3B H3B FAD sing 98 n n 
O3B HO3A FAD sing 99 n n 
C2B O2B FAD sing 100 n n 
C2B C1B FAD sing 101 n n 
C2B H2B FAD sing 102 n n 
O2B HO2A FAD sing 103 n n 
C1B N9A FAD sing 104 n n 
C1B H1B FAD sing 105 n n 
N9A C8A FAD sing 106 n y 
N9A C4A FAD sing 107 n y 
C8A N7A FAD doub 108 n y 
C8A H8A FAD sing 109 n n 
N7A C5A FAD sing 110 n y 
C5A C6A FAD sing 111 n y 
C5A C4A FAD doub 112 n y 
C6A N6A FAD sing 113 n n 
C6A N1A FAD doub 114 n y 
N6A H61A FAD sing 115 n n 
N6A H62A FAD sing 116 n n 
N1A C2A FAD sing 117 n y 
C2A N3A FAD doub 118 n y 
C2A H2A FAD sing 119 n n 
N3A C4A FAD sing 120 n y 
N1 C2 FAD sing 121 n n 
N1 C10 FAD doub 122 n n 
C2 O2 FAD doub 123 n n 
C2 N3 FAD sing 124 n n 
N3 C4 FAD sing 125 n n 
N3 HN3 FAD sing 126 n n 
C4 O4 FAD doub 127 n n 
C4 C4X FAD sing 128 n n 
C4X N5 FAD doub 129 n n 
C4X C10 FAD sing 130 n n 
N5 C5X FAD sing 131 n n 
C5X C6 FAD doub 132 n y 
C5X C9A FAD sing 133 n y 
C6 C7 FAD sing 134 n y 
C6 H6 FAD sing 135 n n 
C7 C7M FAD sing 136 n n 
C7 C8 FAD doub 137 n y 
C7M HM71 FAD sing 138 n n 
C7M HM72 FAD sing 139 n n 
C7M HM73 FAD sing 140 n n 
C8 C8M FAD sing 141 n n 
C8 C9 FAD sing 142 n y 
C8M HM81 FAD sing 143 n n 
C8M HM82 FAD sing 144 n n 
C8M HM83 FAD sing 145 n n 
C9 C9A FAD doub 146 n y 
C9 H9 FAD sing 147 n n 
C9A N10 FAD sing 148 n n 
N10 C10 FAD sing 149 n n 
N10 C1' FAD sing 150 n n 
C1' C2' FAD sing 151 n n 
C1' "H1'1" FAD sing 152 n n 
C1' "H1'2" FAD sing 153 n n 
C2' O2' FAD sing 154 n n 
C2' C3' FAD sing 155 n n 
C2' H2' FAD sing 156 n n 
O2' HO2' FAD sing 157 n n 
C3' O3' FAD sing 158 n n 
C3' C4' FAD sing 159 n n 
C3' H3' FAD sing 160 n n 
O3' HO3' FAD sing 161 n n 
C4' O4' FAD sing 162 n n 
C4' C5' FAD sing 163 n n 
C4' H4' FAD sing 164 n n 
O4' HO4' FAD sing 165 n n 
C5' O5' FAD sing 166 n n 
C5' "H5'1" FAD sing 167 n n 
C5' "H5'2" FAD sing 168 n n 
O5' P FAD sing 169 n n 
P O1P FAD doub 170 n n 
P O2P FAD sing 171 n n 
P O3P FAD sing 172 n n 
O2P HOP2 FAD sing 173 n n 
#
_atom_sites.entry_id                     8K40 
_atom_sites.fract_transf_matrix[1][1]    0.012789 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00945 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007885 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FAD A 1 501 501 FAD FAD . 
D 2 FAD B 1 501 501 FAD FAD . 
E 3 HOH A 1 601 36 HOH HOH . 
E 3 HOH A 2 602 27 HOH HOH . 
E 3 HOH A 3 603 16 HOH HOH . 
E 3 HOH A 4 604 21 HOH HOH . 
E 3 HOH A 5 605 14 HOH HOH . 
E 3 HOH A 6 606 15 HOH HOH . 
E 3 HOH A 7 607 2 HOH HOH . 
E 3 HOH A 8 608 3 HOH HOH . 
E 3 HOH A 9 609 35 HOH HOH . 
E 3 HOH A 10 610 6 HOH HOH . 
E 3 HOH A 11 611 31 HOH HOH . 
E 3 HOH A 12 612 19 HOH HOH . 
E 3 HOH A 13 613 20 HOH HOH . 
E 3 HOH A 14 614 37 HOH HOH . 
E 3 HOH A 15 615 23 HOH HOH . 
E 3 HOH A 16 616 39 HOH HOH . 
E 3 HOH A 17 617 34 HOH HOH . 
E 3 HOH A 18 618 25 HOH HOH . 
E 3 HOH A 19 619 9 HOH HOH . 
E 3 HOH A 20 620 29 HOH HOH . 
E 3 HOH A 21 621 26 HOH HOH . 
E 3 HOH A 22 622 24 HOH HOH . 
E 3 HOH A 23 623 22 HOH HOH . 
E 3 HOH A 24 624 40 HOH HOH . 
E 3 HOH A 25 625 10 HOH HOH . 
E 3 HOH A 26 626 38 HOH HOH . 
F 3 HOH B 1 601 28 HOH HOH . 
F 3 HOH B 2 602 12 HOH HOH . 
F 3 HOH B 3 603 33 HOH HOH . 
F 3 HOH B 4 604 32 HOH HOH . 
F 3 HOH B 5 605 4 HOH HOH . 
F 3 HOH B 6 606 18 HOH HOH . 
F 3 HOH B 7 607 5 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . D 2 28.57 18.853 -49.944 1 85.32 ? PA FAD 501 B 1 
HETATM 2 O O1A FAD . . . D 2 27.1 18.79 -49.686 1 75.74 ? O1A FAD 501 B 1 
HETATM 3 O O2A FAD . . . D 2 29.229 17.838 -50.815 1 82.1 ? O2A FAD 501 B 1 
HETATM 4 O O5B FAD . . . D 2 28.967 20.324 -50.465 1 101.44 ? O5B FAD 501 B 1 
HETATM 5 C C5B FAD . . . D 2 27.935 21.29 -50.812 1 118.15 ? C5B FAD 501 B 1 
HETATM 6 C C4B FAD . . . D 2 28.164 21.909 -52.176 1 124.94 ? C4B FAD 501 B 1 
HETATM 7 O O4B FAD . . . D 2 29.156 22.961 -52.12 1 129.68 ? O4B FAD 501 B 1 
HETATM 8 C C3B FAD . . . D 2 28.66 21.015 -53.325 1 123.51 ? C3B FAD 501 B 1 
HETATM 9 O O3B FAD . . . D 2 27.545 20.563 -54.08 1 124.16 ? O3B FAD 501 B 1 
HETATM 10 C C2B FAD . . . D 2 29.561 21.942 -54.161 1 125.95 ? C2B FAD 501 B 1 
HETATM 11 O O2B FAD . . . D 2 29.156 22.064 -55.506 1 122.09 ? O2B FAD 501 B 1 
HETATM 12 C C1B FAD . . . D 2 29.401 23.294 -53.464 1 135.37 ? C1B FAD 501 B 1 
HETATM 13 N N9A FAD . . . D 2 30.561 24.204 -53.577 1 135.02 ? N9A FAD 501 B 1 
HETATM 14 C C8A FAD . . . D 2 31.892 23.85 -53.591 1 134.57 ? C8A FAD 501 B 1 
HETATM 15 N N7A FAD . . . D 2 32.687 24.885 -53.734 1 134.32 ? N7A FAD 501 B 1 
HETATM 16 C C5A FAD . . . D 2 31.833 25.98 -53.823 1 130.7 ? C5A FAD 501 B 1 
HETATM 17 C C6A FAD . . . D 2 32.07 27.36 -53.983 1 127.47 ? C6A FAD 501 B 1 
HETATM 18 N N6A FAD . . . D 2 33.286 27.886 -54.088 1 132.09 ? N6A FAD 501 B 1 
HETATM 19 N N1A FAD . . . D 2 30.994 28.185 -54.031 1 112.71 ? N1A FAD 501 B 1 
HETATM 20 C C2A FAD . . . D 2 29.775 27.644 -53.921 1 111.34 ? C2A FAD 501 B 1 
HETATM 21 N N3A FAD . . . D 2 29.432 26.364 -53.777 1 118.7 ? N3A FAD 501 B 1 
HETATM 22 C C4A FAD . . . D 2 30.519 25.57 -53.733 1 124 ? C4A FAD 501 B 1 
HETATM 23 N N1 FAD . . . D 2 28.956 9.544 -46.736 1 93.63 ? N1 FAD 501 B 1 
HETATM 24 C C2 FAD . . . D 2 28.259 8.584 -46.051 1 93.17 ? C2 FAD 501 B 1 
HETATM 25 O O2 FAD . . . D 2 27.882 8.757 -44.881 1 91.29 ? O2 FAD 501 B 1 
HETATM 26 N N3 FAD . . . D 2 27.94 7.402 -46.627 1 85.1 ? N3 FAD 501 B 1 
HETATM 27 C C4 FAD . . . D 2 28.28 7.106 -47.921 1 83.82 ? C4 FAD 501 B 1 
HETATM 28 O O4 FAD . . . D 2 27.966 6.032 -48.393 1 84 ? O4 FAD 501 B 1 
HETATM 29 C C4X FAD . . . D 2 28.99 8.06 -48.657 1 91.15 ? C4X FAD 501 B 1 
HETATM 30 N N5 FAD . . . D 2 29.32 7.771 -49.886 1 84.93 ? N5 FAD 501 B 1 
HETATM 31 C C5X FAD . . . D 2 30.013 8.714 -50.594 1 93.36 ? C5X FAD 501 B 1 
HETATM 32 C C6 FAD . . . D 2 30.356 8.414 -51.923 1 90.32 ? C6 FAD 501 B 1 
HETATM 33 C C7 FAD . . . D 2 31.035 9.306 -52.715 1 87.84 ? C7 FAD 501 B 1 
HETATM 34 C C7M FAD . . . D 2 31.363 8.917 -54.133 1 88.3 ? C7M FAD 501 B 1 
HETATM 35 C C8 FAD . . . D 2 31.409 10.575 -52.173 1 90.77 ? C8 FAD 501 B 1 
HETATM 36 C C8M FAD . . . D 2 32.163 11.586 -52.999 1 88.97 ? C8M FAD 501 B 1 
HETATM 37 C C9 FAD . . . D 2 31.09 10.875 -50.858 1 91.59 ? C9 FAD 501 B 1 
HETATM 38 C C9A FAD . . . D 2 30.383 9.963 -50.049 1 97.13 ? C9A FAD 501 B 1 
HETATM 39 N N10 FAD . . . D 2 30.017 10.232 -48.73 1 91.3 ? N10 FAD 501 B 1 
HETATM 40 C C10 FAD . . . D 2 29.309 9.294 -47.984 1 95.13 ? C10 FAD 501 B 1 
HETATM 41 C C1' FAD . . . D 2 30.396 11.516 -48.119 1 93.22 ? C1' FAD 501 B 1 
HETATM 42 C C2' FAD . . . D 2 29.358 12.587 -48.34 1 87.76 ? C2' FAD 501 B 1 
HETATM 43 O O2' FAD . . . D 2 29.174 12.835 -49.718 1 89.4 ? O2' FAD 501 B 1 
HETATM 44 C C3' FAD . . . D 2 29.808 13.875 -47.656 1 79 ? C3' FAD 501 B 1 
HETATM 45 O O3' FAD . . . D 2 30.334 13.538 -46.376 1 74.72 ? O3' FAD 501 B 1 
HETATM 46 C C4' FAD . . . D 2 28.683 14.901 -47.536 1 75.09 ? C4' FAD 501 B 1 
HETATM 47 O O4' FAD . . . D 2 28.338 15.375 -48.836 1 79.04 ? O4' FAD 501 B 1 
HETATM 48 C C5' FAD . . . D 2 29.053 16.101 -46.702 1 84.79 ? C5' FAD 501 B 1 
HETATM 49 O O5' FAD . . . D 2 28.204 17.24 -47.057 1 84.72 ? O5' FAD 501 B 1 
HETATM 50 P P FAD . . . D 2 28.862 18.699 -47.03 1 76.36 ? P FAD 501 B 1 
HETATM 51 O O1P FAD . . . D 2 30.108 18.614 -46.207 1 78.1 ? O1P FAD 501 B 1 
HETATM 52 O O2P FAD . . . D 2 27.832 19.763 -46.79 1 70.02 ? O2P FAD 501 B 1 
HETATM 53 O O3P FAD . . . D 2 29.338 18.758 -48.552 1 82.11 ? O3P FAD 501 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           271 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           53 
#