data_8K56 # _model_server_result.job_id 3VF5UP35U7CGOp8Zth6EYQ _model_server_result.datetime_utc '2024-12-01 02:33:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 8K56 # _exptl.entry_id 8K56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 243.366 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{S}-(2-acetamidoethyl) (~{E})-oct-2-enethioate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K56 _cell.length_a 72.456 _cell.length_b 89.294 _cell.length_c 127.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,M 1 1 B,H,I,J,K,L,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C12 H21 N O2 S' _chem_comp.formula_weight 243.366 _chem_comp.id I7G _chem_comp.mon_nstd_flag . _chem_comp.name '~{S}-(2-acetamidoethyl) (~{E})-oct-2-enethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'S-2-acetamidoethyl (e)-oct-2-enethioate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C05 N06 I7G sing 152 n n C05 C04 I7G sing 153 n n N06 C07 I7G sing 154 n n O01 C02 I7G doub 155 n n C04 S03 I7G sing 156 n n C08 C07 I7G sing 157 n n C07 O09 I7G doub 158 n n C02 S03 I7G sing 159 n n C02 C10 I7G sing 160 n n C11 C10 I7G doub 161 e n C11 C12 I7G sing 162 n n C12 C13 I7G sing 163 n n C15 C16 I7G sing 164 n n C15 C14 I7G sing 165 n n C14 C13 I7G sing 166 n n C10 H101 I7G sing 167 n n C11 H111 I7G sing 168 n n C12 H122 I7G sing 169 n n C12 H121 I7G sing 170 n n C13 H132 I7G sing 171 n n C13 H131 I7G sing 172 n n C14 H141 I7G sing 173 n n C14 H142 I7G sing 174 n n C15 H151 I7G sing 175 n n C15 H152 I7G sing 176 n n C04 H041 I7G sing 177 n n C04 H042 I7G sing 178 n n C05 H052 I7G sing 179 n n C05 H051 I7G sing 180 n n C08 H082 I7G sing 181 n n C08 H083 I7G sing 182 n n C08 H081 I7G sing 183 n n C16 H162 I7G sing 184 n n C16 H161 I7G sing 185 n n C16 H163 I7G sing 186 n n N06 H061 I7G sing 187 n n # _atom_sites.entry_id 8K56 _atom_sites.fract_transf_matrix[1][1] 0.013801 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011199 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007859 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I7G B 1 301 301 I7G SNA . D 3 SO4 B 1 302 10 SO4 SO4 . E 3 SO4 B 1 303 11 SO4 SO4 . F 3 SO4 B 1 304 15 SO4 SO4 . G 3 SO4 B 1 305 16 SO4 SO4 . H 2 I7G A 1 301 301 I7G SNA . I 3 SO4 A 1 302 8 SO4 SO4 . J 3 SO4 A 1 303 12 SO4 SO4 . K 3 SO4 A 1 304 13 SO4 SO4 . L 3 SO4 A 1 305 14 SO4 SO4 . M 4 HOH B 1 401 64 HOH HOH . M 4 HOH B 2 402 100 HOH HOH . M 4 HOH B 3 403 149 HOH HOH . M 4 HOH B 4 404 145 HOH HOH . M 4 HOH B 5 405 53 HOH HOH . M 4 HOH B 6 406 121 HOH HOH . M 4 HOH B 7 407 3 HOH HOH . M 4 HOH B 8 408 79 HOH HOH . M 4 HOH B 9 409 7 HOH HOH . M 4 HOH B 10 410 95 HOH HOH . M 4 HOH B 11 411 24 HOH HOH . M 4 HOH B 12 412 139 HOH HOH . M 4 HOH B 13 413 17 HOH HOH . M 4 HOH B 14 414 150 HOH HOH . M 4 HOH B 15 415 13 HOH HOH . M 4 HOH B 16 416 49 HOH HOH . M 4 HOH B 17 417 19 HOH HOH . M 4 HOH B 18 418 37 HOH HOH . M 4 HOH B 19 419 63 HOH HOH . M 4 HOH B 20 420 32 HOH HOH . M 4 HOH B 21 421 72 HOH HOH . M 4 HOH B 22 422 8 HOH HOH . M 4 HOH B 23 423 157 HOH HOH . M 4 HOH B 24 424 89 HOH HOH . M 4 HOH B 25 425 1 HOH HOH . M 4 HOH B 26 426 16 HOH HOH . M 4 HOH B 27 427 76 HOH HOH . M 4 HOH B 28 428 146 HOH HOH . M 4 HOH B 29 429 47 HOH HOH . M 4 HOH B 30 430 54 HOH HOH . M 4 HOH B 31 431 159 HOH HOH . M 4 HOH B 32 432 59 HOH HOH . M 4 HOH B 33 433 97 HOH HOH . M 4 HOH B 34 434 115 HOH HOH . M 4 HOH B 35 435 57 HOH HOH . M 4 HOH B 36 436 105 HOH HOH . M 4 HOH B 37 437 119 HOH HOH . M 4 HOH B 38 438 71 HOH HOH . M 4 HOH B 39 439 78 HOH HOH . M 4 HOH B 40 440 88 HOH HOH . M 4 HOH B 41 441 65 HOH HOH . M 4 HOH B 42 442 28 HOH HOH . M 4 HOH B 43 443 123 HOH HOH . M 4 HOH B 44 444 46 HOH HOH . M 4 HOH B 45 445 103 HOH HOH . M 4 HOH B 46 446 6 HOH HOH . M 4 HOH B 47 447 42 HOH HOH . M 4 HOH B 48 448 75 HOH HOH . M 4 HOH B 49 449 170 HOH HOH . M 4 HOH B 50 450 52 HOH HOH . M 4 HOH B 51 451 107 HOH HOH . M 4 HOH B 52 452 81 HOH HOH . M 4 HOH B 53 453 169 HOH HOH . M 4 HOH B 54 454 137 HOH HOH . M 4 HOH B 55 455 142 HOH HOH . M 4 HOH B 56 456 152 HOH HOH . M 4 HOH B 57 457 21 HOH HOH . M 4 HOH B 58 458 125 HOH HOH . M 4 HOH B 59 459 109 HOH HOH . M 4 HOH B 60 460 90 HOH HOH . M 4 HOH B 61 461 41 HOH HOH . M 4 HOH B 62 462 87 HOH HOH . M 4 HOH B 63 463 23 HOH HOH . M 4 HOH B 64 464 40 HOH HOH . M 4 HOH B 65 465 164 HOH HOH . M 4 HOH B 66 466 174 HOH HOH . M 4 HOH B 67 467 144 HOH HOH . M 4 HOH B 68 468 27 HOH HOH . M 4 HOH B 69 469 117 HOH HOH . M 4 HOH B 70 470 74 HOH HOH . M 4 HOH B 71 471 177 HOH HOH . M 4 HOH B 72 472 22 HOH HOH . M 4 HOH B 73 473 163 HOH HOH . M 4 HOH B 74 474 178 HOH HOH . M 4 HOH B 75 475 138 HOH HOH . M 4 HOH B 76 476 106 HOH HOH . M 4 HOH B 77 477 182 HOH HOH . M 4 HOH B 78 478 116 HOH HOH . M 4 HOH B 79 479 136 HOH HOH . M 4 HOH B 80 480 172 HOH HOH . M 4 HOH B 81 481 70 HOH HOH . M 4 HOH B 82 482 104 HOH HOH . N 4 HOH A 1 401 176 HOH HOH . N 4 HOH A 2 402 30 HOH HOH . N 4 HOH A 3 403 126 HOH HOH . N 4 HOH A 4 404 155 HOH HOH . N 4 HOH A 5 405 118 HOH HOH . N 4 HOH A 6 406 160 HOH HOH . N 4 HOH A 7 407 68 HOH HOH . N 4 HOH A 8 408 43 HOH HOH . N 4 HOH A 9 409 135 HOH HOH . N 4 HOH A 10 410 80 HOH HOH . N 4 HOH A 11 411 4 HOH HOH . N 4 HOH A 12 412 151 HOH HOH . N 4 HOH A 13 413 112 HOH HOH . N 4 HOH A 14 414 35 HOH HOH . N 4 HOH A 15 415 93 HOH HOH . N 4 HOH A 16 416 31 HOH HOH . N 4 HOH A 17 417 9 HOH HOH . N 4 HOH A 18 418 5 HOH HOH . N 4 HOH A 19 419 2 HOH HOH . N 4 HOH A 20 420 12 HOH HOH . N 4 HOH A 21 421 34 HOH HOH . N 4 HOH A 22 422 181 HOH HOH . N 4 HOH A 23 423 94 HOH HOH . N 4 HOH A 24 424 60 HOH HOH . N 4 HOH A 25 425 15 HOH HOH . N 4 HOH A 26 426 48 HOH HOH . N 4 HOH A 27 427 26 HOH HOH . N 4 HOH A 28 428 77 HOH HOH . N 4 HOH A 29 429 111 HOH HOH . N 4 HOH A 30 430 56 HOH HOH . N 4 HOH A 31 431 102 HOH HOH . N 4 HOH A 32 432 45 HOH HOH . N 4 HOH A 33 433 158 HOH HOH . N 4 HOH A 34 434 20 HOH HOH . N 4 HOH A 35 435 38 HOH HOH . N 4 HOH A 36 436 171 HOH HOH . N 4 HOH A 37 437 122 HOH HOH . N 4 HOH A 38 438 131 HOH HOH . N 4 HOH A 39 439 55 HOH HOH . N 4 HOH A 40 440 154 HOH HOH . N 4 HOH A 41 441 165 HOH HOH . N 4 HOH A 42 442 66 HOH HOH . N 4 HOH A 43 443 25 HOH HOH . N 4 HOH A 44 444 14 HOH HOH . N 4 HOH A 45 445 33 HOH HOH . N 4 HOH A 46 446 18 HOH HOH . N 4 HOH A 47 447 147 HOH HOH . N 4 HOH A 48 448 130 HOH HOH . N 4 HOH A 49 449 83 HOH HOH . N 4 HOH A 50 450 61 HOH HOH . N 4 HOH A 51 451 120 HOH HOH . N 4 HOH A 52 452 132 HOH HOH . N 4 HOH A 53 453 84 HOH HOH . N 4 HOH A 54 454 10 HOH HOH . N 4 HOH A 55 455 91 HOH HOH . N 4 HOH A 56 456 175 HOH HOH . N 4 HOH A 57 457 11 HOH HOH . N 4 HOH A 58 458 36 HOH HOH . N 4 HOH A 59 459 101 HOH HOH . N 4 HOH A 60 460 39 HOH HOH . N 4 HOH A 61 461 62 HOH HOH . N 4 HOH A 62 462 133 HOH HOH . N 4 HOH A 63 463 129 HOH HOH . N 4 HOH A 64 464 73 HOH HOH . N 4 HOH A 65 465 134 HOH HOH . N 4 HOH A 66 466 98 HOH HOH . N 4 HOH A 67 467 108 HOH HOH . N 4 HOH A 68 468 44 HOH HOH . N 4 HOH A 69 469 92 HOH HOH . N 4 HOH A 70 470 153 HOH HOH . N 4 HOH A 71 471 124 HOH HOH . N 4 HOH A 72 472 114 HOH HOH . N 4 HOH A 73 473 50 HOH HOH . N 4 HOH A 74 474 58 HOH HOH . N 4 HOH A 75 475 161 HOH HOH . N 4 HOH A 76 476 113 HOH HOH . N 4 HOH A 77 477 82 HOH HOH . N 4 HOH A 78 478 67 HOH HOH . N 4 HOH A 79 479 127 HOH HOH . N 4 HOH A 80 480 85 HOH HOH . N 4 HOH A 81 481 86 HOH HOH . N 4 HOH A 82 482 51 HOH HOH . N 4 HOH A 83 483 29 HOH HOH . N 4 HOH A 84 484 140 HOH HOH . N 4 HOH A 85 485 148 HOH HOH . N 4 HOH A 86 486 168 HOH HOH . N 4 HOH A 87 487 141 HOH HOH . N 4 HOH A 88 488 166 HOH HOH . N 4 HOH A 89 489 173 HOH HOH . N 4 HOH A 90 490 162 HOH HOH . N 4 HOH A 91 491 143 HOH HOH . N 4 HOH A 92 492 180 HOH HOH . N 4 HOH A 93 493 179 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 I7G . . . H 2 -12.268 -19.316 10.544 1 65.24 ? C10 I7G 301 A 1 HETATM 2 C C11 I7G . . . H 2 -11.848 -20.497 10.124 1 65.7 ? C11 I7G 301 A 1 HETATM 3 C C12 I7G . . . H 2 -10.772 -21.283 10.87 1 65.48 ? C12 I7G 301 A 1 HETATM 4 C C13 I7G . . . H 2 -11.205 -21.627 12.281 1 61.09 ? C13 I7G 301 A 1 HETATM 5 C C14 I7G . . . H 2 -11.771 -23.04 12.277 1 62.97 ? C14 I7G 301 A 1 HETATM 6 C C15 I7G . . . H 2 -10.957 -24.083 11.51 1 67.01 ? C15 I7G 301 A 1 HETATM 7 C C02 I7G . . . H 2 -13.319 -18.58 9.71 1 65.69 ? C02 I7G 301 A 1 HETATM 8 C C04 I7G . . . H 2 -16.196 -17.647 9.122 1 51.3 ? C04 I7G 301 A 1 HETATM 9 C C05 I7G . . . H 2 -16.858 -18.742 8.277 1 57.07 ? C05 I7G 301 A 1 HETATM 10 C C07 I7G . . . H 2 -19.074 -19.358 9.422 1 59.96 ? C07 I7G 301 A 1 HETATM 11 C C08 I7G . . . H 2 -20.598 -19.416 9.351 1 47.62 ? C08 I7G 301 A 1 HETATM 12 C C16 I7G . . . H 2 -11.561 -25.472 11.676 1 72.7 ? C16 I7G 301 A 1 HETATM 13 N N06 I7G . . . H 2 -18.323 -18.808 8.296 1 60.42 ? N06 I7G 301 A 1 HETATM 14 O O01 I7G . . . H 2 -12.972 -18.162 8.642 1 61.99 ? O01 I7G 301 A 1 HETATM 15 O O09 I7G . . . H 2 -18.528 -19.748 10.403 1 66.45 ? O09 I7G 301 A 1 HETATM 16 S S03 I7G . . . H 2 -15.021 -18.382 10.338 1 69.69 ? S03 I7G 301 A 1 HETATM 17 H H101 I7G . . . H 2 -11.879 -18.881 11.456 1 78.28 ? H101 I7G 301 A 1 HETATM 18 H H111 I7G . . . H 2 -12.278 -20.919 9.224 1 78.84 ? H111 I7G 301 A 1 HETATM 19 H H122 I7G . . . H 2 -9.867 -20.686 10.916 1 78.58 ? H122 I7G 301 A 1 HETATM 20 H H121 I7G . . . H 2 -10.571 -22.203 10.331 1 78.58 ? H121 I7G 301 A 1 HETATM 21 H H132 I7G . . . H 2 -11.962 -20.926 12.616 1 73.3 ? H132 I7G 301 A 1 HETATM 22 H H131 I7G . . . H 2 -10.354 -21.572 12.952 1 73.3 ? H131 I7G 301 A 1 HETATM 23 H H141 I7G . . . H 2 -11.854 -23.37 13.307 1 75.56 ? H141 I7G 301 A 1 HETATM 24 H H142 I7G . . . H 2 -12.763 -23.001 11.839 1 75.56 ? H142 I7G 301 A 1 HETATM 25 H H151 I7G . . . H 2 -10.943 -23.822 10.457 1 80.41 ? H151 I7G 301 A 1 HETATM 26 H H152 I7G . . . H 2 -9.939 -24.088 11.885 1 80.41 ? H152 I7G 301 A 1 HETATM 27 H H041 I7G . . . H 2 -16.963 -17.096 9.656 1 61.56 ? H041 I7G 301 A 1 HETATM 28 H H042 I7G . . . H 2 -15.655 -16.97 8.468 1 61.56 ? H042 I7G 301 A 1 HETATM 29 H H052 I7G . . . H 2 -16.55 -18.591 7.247 1 68.48 ? H052 I7G 301 A 1 HETATM 30 H H051 I7G . . . H 2 -16.483 -19.698 8.627 1 68.48 ? H051 I7G 301 A 1 HETATM 31 H H082 I7G . . . H 2 -20.898 -19.936 8.447 1 57.14 ? H082 I7G 301 A 1 HETATM 32 H H083 I7G . . . H 2 -20.998 -18.407 9.339 1 57.14 ? H083 I7G 301 A 1 HETATM 33 H H081 I7G . . . H 2 -20.98 -19.947 10.218 1 57.14 ? H081 I7G 301 A 1 HETATM 34 H H162 I7G . . . H 2 -12.14 -25.724 10.792 1 87.24 ? H162 I7G 301 A 1 HETATM 35 H H161 I7G . . . H 2 -12.209 -25.484 12.548 1 87.24 ? H161 I7G 301 A 1 HETATM 36 H H163 I7G . . . H 2 -10.766 -26.2 11.807 1 87.24 ? H163 I7G 301 A 1 HETATM 37 H H061 I7G . . . H 2 -18.83 -18.462 7.504 1 72.5 ? H061 I7G 301 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 37 #