data_8K5T # _model_server_result.job_id VzzfPWferK-mrHqY-BuLhQ _model_server_result.datetime_utc '2024-12-26 22:01:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k5t # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8K5T # _exptl.entry_id 8K5T _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 498.897 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.44 _cell.angle_gamma 90 _cell.entry_id 8K5T _cell.length_a 123.971 _cell.length_b 56.866 _cell.length_c 171.888 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K5T _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C18 H19 Cl N6 O7 S' _chem_comp.formula_weight 498.897 _chem_comp.id VQ5 _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL C16 VQ5 sing 376 n n C17 C16 VQ5 doub 377 n y C17 C18 VQ5 sing 378 n y C16 C15 VQ5 sing 379 n y C20 C15 VQ5 sing 380 n n C18 C19 VQ5 doub 381 n y C15 C14 VQ5 doub 382 n y C19 C14 VQ5 sing 383 n y N5 C8 VQ5 sing 384 n n C14 C13 VQ5 sing 385 n n N2 C6 VQ5 sing 386 n y N2 C7 VQ5 doub 387 n y C8 C6 VQ5 sing 388 n y C8 N4 VQ5 doub 389 n y C6 C5 VQ5 doub 390 n y C13 N6 VQ5 sing 391 n n C13 O5 VQ5 doub 392 n n O2 C2 VQ5 sing 393 n n C7 N1 VQ5 sing 394 n y N4 C9 VQ5 sing 395 n y C2 C3 VQ5 sing 396 n n C2 C1 VQ5 sing 397 n n N6 S VQ5 sing 398 n n C10 C1 VQ5 sing 399 n n C10 O4 VQ5 sing 400 n n C5 N1 VQ5 sing 401 n y C5 N3 VQ5 sing 402 n y O12 S VQ5 doub 403 n n N1 C4 VQ5 sing 404 n n C3 C4 VQ5 sing 405 n n C3 O3 VQ5 sing 406 n n C9 N3 VQ5 doub 407 n y C1 O1 VQ5 sing 408 n n S O4 VQ5 sing 409 n n S O11 VQ5 doub 410 n n C4 O1 VQ5 sing 411 n n C20 H1 VQ5 sing 412 n n C20 H2 VQ5 sing 413 n n C20 H3 VQ5 sing 414 n n C17 H4 VQ5 sing 415 n n C18 H5 VQ5 sing 416 n n C19 H6 VQ5 sing 417 n n N6 H7 VQ5 sing 418 n n C10 H8 VQ5 sing 419 n n C10 H9 VQ5 sing 420 n n C1 H10 VQ5 sing 421 n n C2 H11 VQ5 sing 422 n n O2 H12 VQ5 sing 423 n n C3 H13 VQ5 sing 424 n n O3 H14 VQ5 sing 425 n n C4 H15 VQ5 sing 426 n n C7 H16 VQ5 sing 427 n n C9 H17 VQ5 sing 428 n n N5 H18 VQ5 sing 429 n n N5 H19 VQ5 sing 430 n n # _atom_sites.entry_id 8K5T _atom_sites.fract_transf_matrix[1][1] 0.008066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000911 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017585 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005855 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VQ5 A 1 601 601 VQ5 mcl . D 2 VQ5 B 1 601 601 VQ5 mcl . E 3 HOH A 1 701 32 HOH HOH . E 3 HOH A 2 702 46 HOH HOH . E 3 HOH A 3 703 28 HOH HOH . E 3 HOH A 4 704 51 HOH HOH . E 3 HOH A 5 705 40 HOH HOH . E 3 HOH A 6 706 10 HOH HOH . E 3 HOH A 7 707 22 HOH HOH . E 3 HOH A 8 708 26 HOH HOH . E 3 HOH A 9 709 15 HOH HOH . E 3 HOH A 10 710 25 HOH HOH . E 3 HOH A 11 711 27 HOH HOH . E 3 HOH A 12 712 47 HOH HOH . E 3 HOH A 13 713 29 HOH HOH . E 3 HOH A 14 714 21 HOH HOH . E 3 HOH A 15 715 9 HOH HOH . E 3 HOH A 16 716 39 HOH HOH . E 3 HOH A 17 717 13 HOH HOH . E 3 HOH A 18 718 52 HOH HOH . E 3 HOH A 19 719 55 HOH HOH . E 3 HOH A 20 720 58 HOH HOH . E 3 HOH A 21 721 7 HOH HOH . E 3 HOH A 22 722 33 HOH HOH . E 3 HOH A 23 723 2 HOH HOH . E 3 HOH A 24 724 43 HOH HOH . E 3 HOH A 25 725 49 HOH HOH . E 3 HOH A 26 726 17 HOH HOH . E 3 HOH A 27 727 20 HOH HOH . E 3 HOH A 28 728 35 HOH HOH . E 3 HOH A 29 729 34 HOH HOH . E 3 HOH A 30 730 1 HOH HOH . E 3 HOH A 31 731 5 HOH HOH . E 3 HOH A 32 732 44 HOH HOH . F 3 HOH B 1 701 14 HOH HOH . F 3 HOH B 2 702 37 HOH HOH . F 3 HOH B 3 703 48 HOH HOH . F 3 HOH B 4 704 54 HOH HOH . F 3 HOH B 5 705 57 HOH HOH . F 3 HOH B 6 706 23 HOH HOH . F 3 HOH B 7 707 11 HOH HOH . F 3 HOH B 8 708 41 HOH HOH . F 3 HOH B 9 709 53 HOH HOH . F 3 HOH B 10 710 36 HOH HOH . F 3 HOH B 11 711 50 HOH HOH . F 3 HOH B 12 712 24 HOH HOH . F 3 HOH B 13 713 18 HOH HOH . F 3 HOH B 14 714 56 HOH HOH . F 3 HOH B 15 715 38 HOH HOH . F 3 HOH B 16 716 59 HOH HOH . F 3 HOH B 17 717 12 HOH HOH . F 3 HOH B 18 718 19 HOH HOH . F 3 HOH B 19 719 8 HOH HOH . F 3 HOH B 20 720 16 HOH HOH . F 3 HOH B 21 721 3 HOH HOH . F 3 HOH B 22 722 45 HOH HOH . F 3 HOH B 23 723 6 HOH HOH . F 3 HOH B 24 724 42 HOH HOH . F 3 HOH B 25 725 31 HOH HOH . F 3 HOH B 26 726 4 HOH HOH . F 3 HOH B 27 727 30 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 CL CL VQ5 . . . C 2 21.422 2.744 15.51 1 85.52 ? CL VQ5 601 A 1 HETATM 2 C C16 VQ5 . . . C 2 20.389 3.616 16.708 1 65.52 ? C16 VQ5 601 A 1 HETATM 3 C C15 VQ5 . . . C 2 19.795 2.865 17.696 1 58.7 ? C15 VQ5 601 A 1 HETATM 4 C C20 VQ5 . . . C 2 20.094 1.39 17.613 1 57.64 ? C20 VQ5 601 A 1 HETATM 5 C C17 VQ5 . . . C 2 20.201 4.995 16.658 1 63.39 ? C17 VQ5 601 A 1 HETATM 6 C C18 VQ5 . . . C 2 19.407 5.622 17.614 1 60.81 ? C18 VQ5 601 A 1 HETATM 7 C C19 VQ5 . . . C 2 18.809 4.868 18.614 1 58.63 ? C19 VQ5 601 A 1 HETATM 8 C C14 VQ5 . . . C 2 19.003 3.486 18.666 1 56.91 ? C14 VQ5 601 A 1 HETATM 9 C C13 VQ5 . . . C 2 18.321 2.73 19.773 1 53.36 ? C13 VQ5 601 A 1 HETATM 10 O O5 VQ5 . . . C 2 17.428 3.28 20.387 1 51.89 ? O5 VQ5 601 A 1 HETATM 11 N N6 VQ5 . . . C 2 18.702 1.484 20.042 1 49.14 ? N6 VQ5 601 A 1 HETATM 12 S S VQ5 . . . C 2 18.023 0.511 21.091 1 45.25 ? S VQ5 601 A 1 HETATM 13 O O11 VQ5 . . . C 2 18.793 0.707 22.291 1 47.9 ? O11 VQ5 601 A 1 HETATM 14 O O12 VQ5 . . . C 2 18.143 -0.84 20.614 1 43.27 ? O12 VQ5 601 A 1 HETATM 15 O O4 VQ5 . . . C 2 16.548 0.814 21.395 1 42.93 ? O4 VQ5 601 A 1 HETATM 16 C C10 VQ5 . . . C 2 15.524 0.832 20.409 1 38.86 ? C10 VQ5 601 A 1 HETATM 17 C C1 VQ5 . . . C 2 14.361 1.61 20.995 1 36.28 ? C1 VQ5 601 A 1 HETATM 18 C C2 VQ5 . . . C 2 13.243 1.897 20.019 1 34.81 ? C2 VQ5 601 A 1 HETATM 19 O O2 VQ5 . . . C 2 12.379 0.769 19.895 1 37.28 ? O2 VQ5 601 A 1 HETATM 20 C C3 VQ5 . . . C 2 12.555 3.054 20.691 1 32.77 ? C3 VQ5 601 A 1 HETATM 21 O O3 VQ5 . . . C 2 11.638 2.545 21.662 1 32.01 ? O3 VQ5 601 A 1 HETATM 22 C C4 VQ5 . . . C 2 13.678 3.797 21.387 1 31.87 ? C4 VQ5 601 A 1 HETATM 23 O O1 VQ5 . . . C 2 14.778 2.901 21.448 1 34.03 ? O1 VQ5 601 A 1 HETATM 24 N N1 VQ5 . . . C 2 14.089 4.983 20.62 1 31.06 ? N1 VQ5 601 A 1 HETATM 25 C C7 VQ5 . . . C 2 15.215 5.135 19.902 1 31.16 ? C7 VQ5 601 A 1 HETATM 26 N N2 VQ5 . . . C 2 15.249 6.357 19.336 1 30.33 ? N2 VQ5 601 A 1 HETATM 27 C C5 VQ5 . . . C 2 13.381 6.102 20.53 1 31.23 ? C5 VQ5 601 A 1 HETATM 28 N N3 VQ5 . . . C 2 12.178 6.478 21.063 1 30.05 ? N3 VQ5 601 A 1 HETATM 29 C C9 VQ5 . . . C 2 11.699 7.701 20.792 1 30.36 ? C9 VQ5 601 A 1 HETATM 30 N N4 VQ5 . . . C 2 12.391 8.569 20.011 1 31.22 ? N4 VQ5 601 A 1 HETATM 31 C C8 VQ5 . . . C 2 13.601 8.237 19.457 1 31.62 ? C8 VQ5 601 A 1 HETATM 32 C C6 VQ5 . . . C 2 14.115 6.973 19.719 1 31.59 ? C6 VQ5 601 A 1 HETATM 33 N N5 VQ5 . . . C 2 14.308 9.088 18.666 1 30.69 ? N5 VQ5 601 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #