data_8K5T
#
_model_server_result.job_id            LEjHASNn68vFUm2cc97Ytw 
_model_server_result.datetime_utc      '2024-12-26 21:51:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k5t 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":601}' 
#
_entry.id    8K5T 
#
_exptl.entry_id    8K5T 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              498.897 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.44 
_cell.angle_gamma         90 
_cell.entry_id            8K5T 
_cell.length_a            123.971 
_cell.length_b            56.866 
_cell.length_c            171.888 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K5T 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C18 H19 Cl N6 O7 S' 
_chem_comp.formula_weight    498.897 
_chem_comp.id                VQ5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-(3-chloranyl-2-methyl-phenyl)carbonylsulfamate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL C16 VQ5 sing 376 n n 
C17 C16 VQ5 doub 377 n y 
C17 C18 VQ5 sing 378 n y 
C16 C15 VQ5 sing 379 n y 
C20 C15 VQ5 sing 380 n n 
C18 C19 VQ5 doub 381 n y 
C15 C14 VQ5 doub 382 n y 
C19 C14 VQ5 sing 383 n y 
N5 C8 VQ5 sing 384 n n 
C14 C13 VQ5 sing 385 n n 
N2 C6 VQ5 sing 386 n y 
N2 C7 VQ5 doub 387 n y 
C8 C6 VQ5 sing 388 n y 
C8 N4 VQ5 doub 389 n y 
C6 C5 VQ5 doub 390 n y 
C13 N6 VQ5 sing 391 n n 
C13 O5 VQ5 doub 392 n n 
O2 C2 VQ5 sing 393 n n 
C7 N1 VQ5 sing 394 n y 
N4 C9 VQ5 sing 395 n y 
C2 C3 VQ5 sing 396 n n 
C2 C1 VQ5 sing 397 n n 
N6 S VQ5 sing 398 n n 
C10 C1 VQ5 sing 399 n n 
C10 O4 VQ5 sing 400 n n 
C5 N1 VQ5 sing 401 n y 
C5 N3 VQ5 sing 402 n y 
O12 S VQ5 doub 403 n n 
N1 C4 VQ5 sing 404 n n 
C3 C4 VQ5 sing 405 n n 
C3 O3 VQ5 sing 406 n n 
C9 N3 VQ5 doub 407 n y 
C1 O1 VQ5 sing 408 n n 
S O4 VQ5 sing 409 n n 
S O11 VQ5 doub 410 n n 
C4 O1 VQ5 sing 411 n n 
C20 H1 VQ5 sing 412 n n 
C20 H2 VQ5 sing 413 n n 
C20 H3 VQ5 sing 414 n n 
C17 H4 VQ5 sing 415 n n 
C18 H5 VQ5 sing 416 n n 
C19 H6 VQ5 sing 417 n n 
N6 H7 VQ5 sing 418 n n 
C10 H8 VQ5 sing 419 n n 
C10 H9 VQ5 sing 420 n n 
C1 H10 VQ5 sing 421 n n 
C2 H11 VQ5 sing 422 n n 
O2 H12 VQ5 sing 423 n n 
C3 H13 VQ5 sing 424 n n 
O3 H14 VQ5 sing 425 n n 
C4 H15 VQ5 sing 426 n n 
C7 H16 VQ5 sing 427 n n 
C9 H17 VQ5 sing 428 n n 
N5 H18 VQ5 sing 429 n n 
N5 H19 VQ5 sing 430 n n 
#
_atom_sites.entry_id                     8K5T 
_atom_sites.fract_transf_matrix[1][1]    0.008066 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000911 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017585 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005855 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VQ5 A 1 601 601 VQ5 mcl . 
D 2 VQ5 B 1 601 601 VQ5 mcl . 
E 3 HOH A 1 701 32 HOH HOH . 
E 3 HOH A 2 702 46 HOH HOH . 
E 3 HOH A 3 703 28 HOH HOH . 
E 3 HOH A 4 704 51 HOH HOH . 
E 3 HOH A 5 705 40 HOH HOH . 
E 3 HOH A 6 706 10 HOH HOH . 
E 3 HOH A 7 707 22 HOH HOH . 
E 3 HOH A 8 708 26 HOH HOH . 
E 3 HOH A 9 709 15 HOH HOH . 
E 3 HOH A 10 710 25 HOH HOH . 
E 3 HOH A 11 711 27 HOH HOH . 
E 3 HOH A 12 712 47 HOH HOH . 
E 3 HOH A 13 713 29 HOH HOH . 
E 3 HOH A 14 714 21 HOH HOH . 
E 3 HOH A 15 715 9 HOH HOH . 
E 3 HOH A 16 716 39 HOH HOH . 
E 3 HOH A 17 717 13 HOH HOH . 
E 3 HOH A 18 718 52 HOH HOH . 
E 3 HOH A 19 719 55 HOH HOH . 
E 3 HOH A 20 720 58 HOH HOH . 
E 3 HOH A 21 721 7 HOH HOH . 
E 3 HOH A 22 722 33 HOH HOH . 
E 3 HOH A 23 723 2 HOH HOH . 
E 3 HOH A 24 724 43 HOH HOH . 
E 3 HOH A 25 725 49 HOH HOH . 
E 3 HOH A 26 726 17 HOH HOH . 
E 3 HOH A 27 727 20 HOH HOH . 
E 3 HOH A 28 728 35 HOH HOH . 
E 3 HOH A 29 729 34 HOH HOH . 
E 3 HOH A 30 730 1 HOH HOH . 
E 3 HOH A 31 731 5 HOH HOH . 
E 3 HOH A 32 732 44 HOH HOH . 
F 3 HOH B 1 701 14 HOH HOH . 
F 3 HOH B 2 702 37 HOH HOH . 
F 3 HOH B 3 703 48 HOH HOH . 
F 3 HOH B 4 704 54 HOH HOH . 
F 3 HOH B 5 705 57 HOH HOH . 
F 3 HOH B 6 706 23 HOH HOH . 
F 3 HOH B 7 707 11 HOH HOH . 
F 3 HOH B 8 708 41 HOH HOH . 
F 3 HOH B 9 709 53 HOH HOH . 
F 3 HOH B 10 710 36 HOH HOH . 
F 3 HOH B 11 711 50 HOH HOH . 
F 3 HOH B 12 712 24 HOH HOH . 
F 3 HOH B 13 713 18 HOH HOH . 
F 3 HOH B 14 714 56 HOH HOH . 
F 3 HOH B 15 715 38 HOH HOH . 
F 3 HOH B 16 716 59 HOH HOH . 
F 3 HOH B 17 717 12 HOH HOH . 
F 3 HOH B 18 718 19 HOH HOH . 
F 3 HOH B 19 719 8 HOH HOH . 
F 3 HOH B 20 720 16 HOH HOH . 
F 3 HOH B 21 721 3 HOH HOH . 
F 3 HOH B 22 722 45 HOH HOH . 
F 3 HOH B 23 723 6 HOH HOH . 
F 3 HOH B 24 724 42 HOH HOH . 
F 3 HOH B 25 725 31 HOH HOH . 
F 3 HOH B 26 726 4 HOH HOH . 
F 3 HOH B 27 727 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL VQ5 . . . D 2 -30.005 0.521 69.577 1 83.5 ? CL VQ5 601 B 1 
HETATM 2 C C16 VQ5 . . . D 2 -28.987 1.471 68.416 1 57.25 ? C16 VQ5 601 B 1 
HETATM 3 C C15 VQ5 . . . D 2 -28.477 0.813 67.326 1 52.08 ? C15 VQ5 601 B 1 
HETATM 4 C C20 VQ5 . . . D 2 -28.86 -0.65 67.285 1 54.21 ? C20 VQ5 601 B 1 
HETATM 5 C C17 VQ5 . . . D 2 -28.724 2.822 68.59 1 54.18 ? C17 VQ5 601 B 1 
HETATM 6 C C18 VQ5 . . . D 2 -27.945 3.503 67.664 1 50.88 ? C18 VQ5 601 B 1 
HETATM 7 C C19 VQ5 . . . D 2 -27.422 2.838 66.568 1 48.63 ? C19 VQ5 601 B 1 
HETATM 8 C C14 VQ5 . . . D 2 -27.691 1.488 66.382 1 47.94 ? C14 VQ5 601 B 1 
HETATM 9 C C13 VQ5 . . . D 2 -27.092 0.816 65.168 1 45.17 ? C13 VQ5 601 B 1 
HETATM 10 O O5 VQ5 . . . D 2 -26.352 1.441 64.435 1 41.93 ? O5 VQ5 601 B 1 
HETATM 11 N N6 VQ5 . . . D 2 -27.366 -0.468 64.951 1 42.29 ? N6 VQ5 601 B 1 
HETATM 12 S S VQ5 . . . D 2 -26.738 -1.399 63.848 1 38.15 ? S VQ5 601 B 1 
HETATM 13 O O11 VQ5 . . . D 2 -27.59 -1.218 62.705 1 39.29 ? O11 VQ5 601 B 1 
HETATM 14 O O12 VQ5 . . . D 2 -26.759 -2.743 64.347 1 37.03 ? O12 VQ5 601 B 1 
HETATM 15 O O4 VQ5 . . . D 2 -25.315 -1.025 63.461 1 38.19 ? O4 VQ5 601 B 1 
HETATM 16 C C10 VQ5 . . . D 2 -24.265 -0.963 64.41 1 37.45 ? C10 VQ5 601 B 1 
HETATM 17 C C1 VQ5 . . . D 2 -23.108 -0.265 63.722 1 35.81 ? C1 VQ5 601 B 1 
HETATM 18 C C2 VQ5 . . . D 2 -21.969 0.117 64.644 1 35.79 ? C2 VQ5 601 B 1 
HETATM 19 O O2 VQ5 . . . D 2 -21.093 -0.976 64.901 1 37.2 ? O2 VQ5 601 B 1 
HETATM 20 C C3 VQ5 . . . D 2 -21.319 1.207 63.833 1 35.69 ? C3 VQ5 601 B 1 
HETATM 21 O O3 VQ5 . . . D 2 -20.491 0.63 62.809 1 36.77 ? O3 VQ5 601 B 1 
HETATM 22 C C4 VQ5 . . . D 2 -22.518 1.923 63.225 1 34.38 ? C4 VQ5 601 B 1 
HETATM 23 O O1 VQ5 . . . D 2 -23.565 0.97 63.184 1 33.99 ? O1 VQ5 601 B 1 
HETATM 24 N N1 VQ5 . . . D 2 -22.932 3.083 64.054 1 33.75 ? N1 VQ5 601 B 1 
HETATM 25 C C7 VQ5 . . . D 2 -24.046 3.235 64.794 1 33.34 ? C7 VQ5 601 B 1 
HETATM 26 N N2 VQ5 . . . D 2 -24.044 4.446 65.397 1 32.5 ? N2 VQ5 601 B 1 
HETATM 27 C C5 VQ5 . . . D 2 -22.2 4.185 64.181 1 33.08 ? C5 VQ5 601 B 1 
HETATM 28 N N3 VQ5 . . . D 2 -20.993 4.533 63.648 1 31.45 ? N3 VQ5 601 B 1 
HETATM 29 C C9 VQ5 . . . D 2 -20.487 5.736 63.959 1 32.26 ? C9 VQ5 601 B 1 
HETATM 30 N N4 VQ5 . . . D 2 -21.147 6.595 64.776 1 32.34 ? N4 VQ5 601 B 1 
HETATM 31 C C8 VQ5 . . . D 2 -22.344 6.269 65.326 1 32.02 ? C8 VQ5 601 B 1 
HETATM 32 C C6 VQ5 . . . D 2 -22.897 5.043 65.028 1 32.43 ? C6 VQ5 601 B 1 
HETATM 33 N N5 VQ5 . . . D 2 -23.009 7.111 66.143 1 31.94 ? N5 VQ5 601 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#