data_8K66 # _model_server_result.job_id Ue8Zp7mXCAsEN3oF5pYX4Q _model_server_result.datetime_utc '2024-11-16 08:40:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k66 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":605}' # _entry.id 8K66 # _exptl.entry_id 8K66 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 386.654 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description CHOLESTEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K66 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K66 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 489 A CYS 476 1_555 A SG CYS 501 A CYS 488 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.046 ? disulf ? disulf2 B SG CYS 489 B CYS 476 1_555 B SG CYS 501 B CYS 488 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.046 ? metalc ? metalc1 A O LEU 99 A LEU 86 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc2 A O ASN 255 A ASN 242 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc3 A O VAL 256 A VAL 243 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.105 ? metalc ? metalc4 A O HIS 379 A HIS 366 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc5 A O ASN 480 A ASN 467 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc6 A O VAL 481 A VAL 468 1_555 I NA NA . A NA 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc7 J NA NA . A NA 608 1_555 S O HOH . A HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc8 B O LEU 99 B LEU 86 1_555 Q NA NA . B NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc9 B O ASN 255 B ASN 242 1_555 Q NA NA . B NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc10 B O VAL 256 B VAL 243 1_555 Q NA NA . B NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.925 ? metalc ? metalc11 B O HIS 379 B HIS 366 1_555 Q NA NA . B NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc12 B O ASN 480 B ASN 467 1_555 Q NA NA . B NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc13 B O VAL 481 B VAL 468 1_555 Q NA NA . B NA 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc14 R NA NA . B NA 708 1_555 T O HOH . B HOH 845 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? # _chem_comp.formula 'C27 H46 O' _chem_comp.formula_weight 386.654 _chem_comp.id CLR _chem_comp.mon_nstd_flag . _chem_comp.name CHOLESTEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 CLR sing 70 n n C1 C10 CLR sing 71 n n C1 H11 CLR sing 72 n n C1 H12 CLR sing 73 n n C2 C3 CLR sing 74 n n C2 H21 CLR sing 75 n n C2 H22 CLR sing 76 n n C3 C4 CLR sing 77 n n C3 O1 CLR sing 78 n n C3 H3 CLR sing 79 n n C4 C5 CLR sing 80 n n C4 H41 CLR sing 81 n n C4 H42 CLR sing 82 n n C5 C6 CLR doub 83 n n C5 C10 CLR sing 84 n n C6 C7 CLR sing 85 n n C6 H6 CLR sing 86 n n C7 C8 CLR sing 87 n n C7 H71 CLR sing 88 n n C7 H72 CLR sing 89 n n C8 C9 CLR sing 90 n n C8 C14 CLR sing 91 n n C8 H8 CLR sing 92 n n C9 C10 CLR sing 93 n n C9 C11 CLR sing 94 n n C9 H9 CLR sing 95 n n C10 C19 CLR sing 96 n n C11 C12 CLR sing 97 n n C11 H111 CLR sing 98 n n C11 H112 CLR sing 99 n n C12 C13 CLR sing 100 n n C12 H121 CLR sing 101 n n C12 H122 CLR sing 102 n n C13 C14 CLR sing 103 n n C13 C17 CLR sing 104 n n C13 C18 CLR sing 105 n n C14 C15 CLR sing 106 n n C14 H14 CLR sing 107 n n C15 C16 CLR sing 108 n n C15 H151 CLR sing 109 n n C15 H152 CLR sing 110 n n C16 C17 CLR sing 111 n n C16 H161 CLR sing 112 n n C16 H162 CLR sing 113 n n C17 C20 CLR sing 114 n n C17 H17 CLR sing 115 n n C18 H181 CLR sing 116 n n C18 H182 CLR sing 117 n n C18 H183 CLR sing 118 n n C19 H191 CLR sing 119 n n C19 H192 CLR sing 120 n n C19 H193 CLR sing 121 n n C20 C21 CLR sing 122 n n C20 C22 CLR sing 123 n n C20 H20 CLR sing 124 n n C21 H211 CLR sing 125 n n C21 H212 CLR sing 126 n n C21 H213 CLR sing 127 n n C22 C23 CLR sing 128 n n C22 H221 CLR sing 129 n n C22 H222 CLR sing 130 n n C23 C24 CLR sing 131 n n C23 H231 CLR sing 132 n n C23 H232 CLR sing 133 n n C24 C25 CLR sing 134 n n C24 H241 CLR sing 135 n n C24 H242 CLR sing 136 n n C25 C26 CLR sing 137 n n C25 C27 CLR sing 138 n n C25 H25 CLR sing 139 n n C26 H261 CLR sing 140 n n C26 H262 CLR sing 141 n n C26 H263 CLR sing 142 n n C27 H271 CLR sing 143 n n C27 H272 CLR sing 144 n n C27 H273 CLR sing 145 n n O1 H1 CLR sing 146 n n # _atom_sites.entry_id 8K66 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 Y01 A 1 601 1 Y01 Y01 . D 2 Y01 A 1 602 23 Y01 Y01 . E 3 T7X A 1 603 601 T7X T7X . F 4 PTY A 1 604 801 PTY PTY . G 5 CLR A 1 605 901 CLR CLR . H 6 PC1 A 1 606 701 PC1 PC1 . I 7 NA A 1 607 2 NA NA . J 7 NA A 1 608 3 NA NA . K 6 PC1 B 1 701 701 PC1 PC1 . L 2 Y01 B 1 702 1 Y01 Y01 . M 2 Y01 B 1 703 23 Y01 Y01 . N 3 T7X B 1 704 601 T7X T7X . O 4 PTY B 1 705 801 PTY PTY . P 5 CLR B 1 706 901 CLR CLR . Q 7 NA B 1 707 1 NA NA . R 7 NA B 1 708 4 NA NA . S 8 HOH A 1 701 134 HOH HOH . S 8 HOH A 2 702 43 HOH HOH . S 8 HOH A 3 703 129 HOH HOH . S 8 HOH A 4 704 40 HOH HOH . S 8 HOH A 5 705 11 HOH HOH . S 8 HOH A 6 706 141 HOH HOH . S 8 HOH A 7 707 50 HOH HOH . S 8 HOH A 8 708 34 HOH HOH . S 8 HOH A 9 709 2 HOH HOH . S 8 HOH A 10 710 14 HOH HOH . S 8 HOH A 11 711 57 HOH HOH . S 8 HOH A 12 712 140 HOH HOH . S 8 HOH A 13 713 55 HOH HOH . S 8 HOH A 14 714 33 HOH HOH . S 8 HOH A 15 715 130 HOH HOH . S 8 HOH A 16 716 109 HOH HOH . S 8 HOH A 17 717 114 HOH HOH . S 8 HOH A 18 718 52 HOH HOH . S 8 HOH A 19 719 111 HOH HOH . S 8 HOH A 20 720 6 HOH HOH . S 8 HOH A 21 721 45 HOH HOH . S 8 HOH A 22 722 18 HOH HOH . S 8 HOH A 23 723 20 HOH HOH . S 8 HOH A 24 724 44 HOH HOH . S 8 HOH A 25 725 56 HOH HOH . S 8 HOH A 26 726 58 HOH HOH . S 8 HOH A 27 727 112 HOH HOH . S 8 HOH A 28 728 106 HOH HOH . S 8 HOH A 29 729 17 HOH HOH . S 8 HOH A 30 730 32 HOH HOH . S 8 HOH A 31 731 139 HOH HOH . S 8 HOH A 32 732 27 HOH HOH . S 8 HOH A 33 733 15 HOH HOH . S 8 HOH A 34 734 113 HOH HOH . S 8 HOH A 35 735 48 HOH HOH . S 8 HOH A 36 736 19 HOH HOH . S 8 HOH A 37 737 22 HOH HOH . S 8 HOH A 38 738 47 HOH HOH . S 8 HOH A 39 739 39 HOH HOH . S 8 HOH A 40 740 12 HOH HOH . S 8 HOH A 41 741 10 HOH HOH . S 8 HOH A 42 742 38 HOH HOH . S 8 HOH A 43 743 28 HOH HOH . S 8 HOH A 44 744 1 HOH HOH . S 8 HOH A 45 745 46 HOH HOH . S 8 HOH A 46 746 31 HOH HOH . S 8 HOH A 47 747 136 HOH HOH . S 8 HOH A 48 748 35 HOH HOH . S 8 HOH A 49 749 115 HOH HOH . S 8 HOH A 50 750 53 HOH HOH . S 8 HOH A 51 751 16 HOH HOH . S 8 HOH A 52 752 24 HOH HOH . S 8 HOH A 53 753 41 HOH HOH . S 8 HOH A 54 754 110 HOH HOH . S 8 HOH A 55 755 128 HOH HOH . S 8 HOH A 56 756 30 HOH HOH . S 8 HOH A 57 757 29 HOH HOH . S 8 HOH A 58 758 37 HOH HOH . S 8 HOH A 59 759 42 HOH HOH . S 8 HOH A 60 760 51 HOH HOH . S 8 HOH A 61 761 36 HOH HOH . S 8 HOH A 62 762 54 HOH HOH . S 8 HOH A 63 763 25 HOH HOH . S 8 HOH A 64 764 23 HOH HOH . S 8 HOH A 65 765 49 HOH HOH . T 8 HOH B 1 801 90 HOH HOH . T 8 HOH B 2 802 100 HOH HOH . T 8 HOH B 3 803 132 HOH HOH . T 8 HOH B 4 804 142 HOH HOH . T 8 HOH B 5 805 8 HOH HOH . T 8 HOH B 6 806 120 HOH HOH . T 8 HOH B 7 807 97 HOH HOH . T 8 HOH B 8 808 87 HOH HOH . T 8 HOH B 9 809 81 HOH HOH . T 8 HOH B 10 810 5 HOH HOH . T 8 HOH B 11 811 124 HOH HOH . T 8 HOH B 12 812 80 HOH HOH . T 8 HOH B 13 813 104 HOH HOH . T 8 HOH B 14 814 137 HOH HOH . T 8 HOH B 15 815 102 HOH HOH . T 8 HOH B 16 816 68 HOH HOH . T 8 HOH B 17 817 133 HOH HOH . T 8 HOH B 18 818 127 HOH HOH . T 8 HOH B 19 819 99 HOH HOH . T 8 HOH B 20 820 92 HOH HOH . T 8 HOH B 21 821 118 HOH HOH . T 8 HOH B 22 822 7 HOH HOH . T 8 HOH B 23 823 91 HOH HOH . T 8 HOH B 24 824 65 HOH HOH . T 8 HOH B 25 825 67 HOH HOH . T 8 HOH B 26 826 103 HOH HOH . T 8 HOH B 27 827 105 HOH HOH . T 8 HOH B 28 828 64 HOH HOH . T 8 HOH B 29 829 117 HOH HOH . T 8 HOH B 30 830 79 HOH HOH . T 8 HOH B 31 831 119 HOH HOH . T 8 HOH B 32 832 62 HOH HOH . T 8 HOH B 33 833 135 HOH HOH . T 8 HOH B 34 834 74 HOH HOH . T 8 HOH B 35 835 63 HOH HOH . T 8 HOH B 36 836 116 HOH HOH . T 8 HOH B 37 837 75 HOH HOH . T 8 HOH B 38 838 66 HOH HOH . T 8 HOH B 39 839 69 HOH HOH . T 8 HOH B 40 840 95 HOH HOH . T 8 HOH B 41 841 94 HOH HOH . T 8 HOH B 42 842 85 HOH HOH . T 8 HOH B 43 843 86 HOH HOH . T 8 HOH B 44 844 59 HOH HOH . T 8 HOH B 45 845 9 HOH HOH . T 8 HOH B 46 846 93 HOH HOH . T 8 HOH B 47 847 4 HOH HOH . T 8 HOH B 48 848 138 HOH HOH . T 8 HOH B 49 849 78 HOH HOH . T 8 HOH B 50 850 82 HOH HOH . T 8 HOH B 51 851 73 HOH HOH . T 8 HOH B 52 852 123 HOH HOH . T 8 HOH B 53 853 71 HOH HOH . T 8 HOH B 54 854 101 HOH HOH . T 8 HOH B 55 855 88 HOH HOH . T 8 HOH B 56 856 131 HOH HOH . T 8 HOH B 57 857 125 HOH HOH . T 8 HOH B 58 858 77 HOH HOH . T 8 HOH B 59 859 76 HOH HOH . T 8 HOH B 60 860 98 HOH HOH . T 8 HOH B 61 861 89 HOH HOH . T 8 HOH B 62 862 83 HOH HOH . T 8 HOH B 63 863 72 HOH HOH . T 8 HOH B 64 864 70 HOH HOH . T 8 HOH B 65 865 96 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CLR . . . G 5 133.808 93.828 143.818 1 20.45 ? C1 CLR 605 A 1 HETATM 2 C C2 CLR . . . G 5 133.348 93.146 142.529 1 20.45 ? C2 CLR 605 A 1 HETATM 3 C C3 CLR . . . G 5 133.211 94.131 141.394 1 20.45 ? C3 CLR 605 A 1 HETATM 4 C C4 CLR . . . G 5 132.242 95.237 141.766 1 20.45 ? C4 CLR 605 A 1 HETATM 5 C C5 CLR . . . G 5 131.803 95.174 143.214 1 20.45 ? C5 CLR 605 A 1 HETATM 6 C C6 CLR . . . G 5 130.521 95.259 143.535 1 20.45 ? C6 CLR 605 A 1 HETATM 7 C C7 CLR . . . G 5 129.987 95.398 144.925 1 20.45 ? C7 CLR 605 A 1 HETATM 8 C C8 CLR . . . G 5 131.084 95.589 145.968 1 20.45 ? C8 CLR 605 A 1 HETATM 9 C C9 CLR . . . G 5 132.286 94.684 145.637 1 20.45 ? C9 CLR 605 A 1 HETATM 10 C C10 CLR . . . G 5 132.91 95.009 144.251 1 20.45 ? C10 CLR 605 A 1 HETATM 11 C C11 CLR . . . G 5 133.328 94.663 146.769 1 20.45 ? C11 CLR 605 A 1 HETATM 12 C C12 CLR . . . G 5 132.73 94.403 148.157 1 20.45 ? C12 CLR 605 A 1 HETATM 13 C C13 CLR . . . G 5 131.61 95.395 148.483 1 20.45 ? C13 CLR 605 A 1 HETATM 14 C C14 CLR . . . G 5 130.566 95.255 147.36 1 20.45 ? C14 CLR 605 A 1 HETATM 15 C C15 CLR . . . G 5 129.335 95.986 147.886 1 20.45 ? C15 CLR 605 A 1 HETATM 16 C C16 CLR . . . G 5 129.37 95.734 149.406 1 20.45 ? C16 CLR 605 A 1 HETATM 17 C C17 CLR . . . G 5 130.736 95.071 149.731 1 20.45 ? C17 CLR 605 A 1 HETATM 18 C C18 CLR . . . G 5 132.17 96.824 148.587 1 20.45 ? C18 CLR 605 A 1 HETATM 19 C C19 CLR . . . G 5 133.737 96.308 144.289 1 20.45 ? C19 CLR 605 A 1 HETATM 20 C C20 CLR . . . G 5 131.242 95.451 151.134 1 20.45 ? C20 CLR 605 A 1 HETATM 21 C C21 CLR . . . G 5 132.528 94.724 151.519 1 20.45 ? C21 CLR 605 A 1 HETATM 22 C C22 CLR . . . G 5 130.146 95.198 152.18 1 20.45 ? C22 CLR 605 A 1 HETATM 23 C C23 CLR . . . G 5 130.483 94.174 153.234 1 20.45 ? C23 CLR 605 A 1 HETATM 24 C C24 CLR . . . G 5 129.455 93.076 153.343 1 20.45 ? C24 CLR 605 A 1 HETATM 25 C C25 CLR . . . G 5 128.339 93.314 154.359 1 20.45 ? C25 CLR 605 A 1 HETATM 26 C C26 CLR . . . G 5 127.283 94.26 153.81 1 20.45 ? C26 CLR 605 A 1 HETATM 27 C C27 CLR . . . G 5 127.704 92.005 154.8 1 20.45 ? C27 CLR 605 A 1 HETATM 28 O O1 CLR . . . G 5 134.494 94.688 141.077 1 20.45 ? O1 CLR 605 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 28 #