data_8K6E # _model_server_result.job_id ZRTmRjXbcYB1PM6IC8j2IA _model_server_result.datetime_utc '2025-02-24 11:23:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k6e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8K6E # _exptl.entry_id 8K6E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K6E _cell.length_a 215.317 _cell.length_b 55.152 _cell.length_c 80.907 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id NH1 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 42 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 42 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id O1D _struct_conn.ptnr2_label_comp_id AR6 _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id AR6 _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.302 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8K6E _atom_sites.fract_transf_matrix[1][1] 0.004644 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ANP A 1 401 401 ANP ANP . E 5 AR6 C 1 101 101 AR6 AR6 . F 6 HOH A 1 501 29 HOH HOH . F 6 HOH A 2 502 11 HOH HOH . F 6 HOH A 3 503 25 HOH HOH . F 6 HOH A 4 504 68 HOH HOH . F 6 HOH A 5 505 17 HOH HOH . F 6 HOH A 6 506 27 HOH HOH . F 6 HOH A 7 507 21 HOH HOH . F 6 HOH A 8 508 75 HOH HOH . F 6 HOH A 9 509 51 HOH HOH . F 6 HOH A 10 510 34 HOH HOH . F 6 HOH A 11 511 31 HOH HOH . F 6 HOH A 12 512 82 HOH HOH . F 6 HOH A 13 513 23 HOH HOH . F 6 HOH A 14 514 59 HOH HOH . F 6 HOH A 15 515 73 HOH HOH . F 6 HOH A 16 516 61 HOH HOH . F 6 HOH A 17 517 49 HOH HOH . F 6 HOH A 18 518 53 HOH HOH . F 6 HOH A 19 519 74 HOH HOH . F 6 HOH A 20 520 52 HOH HOH . F 6 HOH A 21 521 13 HOH HOH . F 6 HOH A 22 522 46 HOH HOH . F 6 HOH A 23 523 93 HOH HOH . F 6 HOH A 24 524 58 HOH HOH . F 6 HOH A 25 525 55 HOH HOH . F 6 HOH A 26 526 54 HOH HOH . F 6 HOH A 27 527 78 HOH HOH . F 6 HOH A 28 528 43 HOH HOH . F 6 HOH A 29 529 94 HOH HOH . F 6 HOH A 30 530 77 HOH HOH . F 6 HOH A 31 531 64 HOH HOH . F 6 HOH A 32 532 87 HOH HOH . F 6 HOH A 33 533 19 HOH HOH . F 6 HOH A 34 534 88 HOH HOH . F 6 HOH A 35 535 38 HOH HOH . F 6 HOH A 36 536 95 HOH HOH . F 6 HOH A 37 537 98 HOH HOH . F 6 HOH A 38 538 72 HOH HOH . F 6 HOH A 39 539 99 HOH HOH . G 6 HOH B 1 401 26 HOH HOH . G 6 HOH B 2 402 89 HOH HOH . G 6 HOH B 3 403 20 HOH HOH . G 6 HOH B 4 404 83 HOH HOH . G 6 HOH B 5 405 67 HOH HOH . G 6 HOH B 6 406 14 HOH HOH . G 6 HOH B 7 407 37 HOH HOH . G 6 HOH B 8 408 69 HOH HOH . G 6 HOH B 9 409 47 HOH HOH . G 6 HOH B 10 410 36 HOH HOH . G 6 HOH B 11 411 15 HOH HOH . G 6 HOH B 12 412 33 HOH HOH . G 6 HOH B 13 413 84 HOH HOH . G 6 HOH B 14 414 12 HOH HOH . G 6 HOH B 15 415 39 HOH HOH . G 6 HOH B 16 416 8 HOH HOH . G 6 HOH B 17 417 80 HOH HOH . G 6 HOH B 18 418 70 HOH HOH . G 6 HOH B 19 419 48 HOH HOH . G 6 HOH B 20 420 85 HOH HOH . G 6 HOH B 21 421 92 HOH HOH . G 6 HOH B 22 422 60 HOH HOH . G 6 HOH B 23 423 91 HOH HOH . G 6 HOH B 24 424 16 HOH HOH . G 6 HOH B 25 425 62 HOH HOH . G 6 HOH B 26 426 35 HOH HOH . G 6 HOH B 27 427 44 HOH HOH . G 6 HOH B 28 428 30 HOH HOH . G 6 HOH B 29 429 86 HOH HOH . G 6 HOH B 30 430 42 HOH HOH . G 6 HOH B 31 431 65 HOH HOH . G 6 HOH B 32 432 57 HOH HOH . G 6 HOH B 33 433 97 HOH HOH . G 6 HOH B 34 434 81 HOH HOH . G 6 HOH B 35 435 41 HOH HOH . G 6 HOH B 36 436 56 HOH HOH . G 6 HOH B 37 437 40 HOH HOH . H 6 HOH C 1 201 100 HOH HOH . H 6 HOH C 2 202 66 HOH HOH . H 6 HOH C 3 203 101 HOH HOH . H 6 HOH C 4 204 9 HOH HOH . H 6 HOH C 5 205 32 HOH HOH . H 6 HOH C 6 206 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . D 4 26.229 19.597 18.901 1 53.87 ? PG ANP 401 A 1 HETATM 2 O O1G ANP . . . D 4 27.678 19.705 18.366 1 38.49 ? O1G ANP 401 A 1 HETATM 3 O O2G ANP . . . D 4 25.782 18.159 18.825 1 41.81 ? O2G ANP 401 A 1 HETATM 4 O O3G ANP . . . D 4 26.158 20.139 20.341 1 41.37 ? O3G ANP 401 A 1 HETATM 5 P PB ANP . . . D 4 25.524 22.189 17.606 1 31.93 ? PB ANP 401 A 1 HETATM 6 O O1B ANP . . . D 4 24.485 22.848 16.768 1 30.82 ? O1B ANP 401 A 1 HETATM 7 O O2B ANP . . . D 4 25.843 22.931 18.9 1 29.6 ? O2B ANP 401 A 1 HETATM 8 N N3B ANP . . . D 4 25.174 20.542 17.924 1 35.28 ? N3B ANP 401 A 1 HETATM 9 P PA ANP . . . D 4 27.39 21.687 15.408 1 30.37 ? PA ANP 401 A 1 HETATM 10 O O1A ANP . . . D 4 26.2 21.083 14.714 1 28.14 -1 O1A ANP 401 A 1 HETATM 11 O O2A ANP . . . D 4 28.562 20.78 15.603 1 29.04 ? O2A ANP 401 A 1 HETATM 12 O O3A ANP . . . D 4 26.931 22.301 16.831 1 34.55 ? O3A ANP 401 A 1 HETATM 13 O O5' ANP . . . D 4 27.842 23.181 14.876 1 37.8 ? O5' ANP 401 A 1 HETATM 14 C C5' ANP . . . D 4 28.51 23.351 13.668 1 36.36 ? C5' ANP 401 A 1 HETATM 15 C C4' ANP . . . D 4 29.304 24.449 13.858 1 35.51 ? C4' ANP 401 A 1 HETATM 16 O O4' ANP . . . D 4 30.619 24.067 13.266 1 38.01 ? O4' ANP 401 A 1 HETATM 17 C C3' ANP . . . D 4 28.799 25.649 12.959 1 36.3 ? C3' ANP 401 A 1 HETATM 18 O O3' ANP . . . D 4 29.103 26.892 13.723 1 36.4 ? O3' ANP 401 A 1 HETATM 19 C C2' ANP . . . D 4 29.507 25.573 11.923 1 37.79 ? C2' ANP 401 A 1 HETATM 20 O O2' ANP . . . D 4 29.718 26.882 11.278 1 35.75 ? O2' ANP 401 A 1 HETATM 21 C C1' ANP . . . D 4 30.951 25.084 12.52 1 39.1 ? C1' ANP 401 A 1 HETATM 22 N N9 ANP . . . D 4 31.855 24.597 11.522 1 39.57 ? N9 ANP 401 A 1 HETATM 23 C C8 ANP . . . D 4 32.939 25.365 11.857 1 39.97 ? C8 ANP 401 A 1 HETATM 24 N N7 ANP . . . D 4 33.982 25.065 11.04 1 31.77 ? N7 ANP 401 A 1 HETATM 25 C C5 ANP . . . D 4 33.528 24.098 10.236 1 34.97 ? C5 ANP 401 A 1 HETATM 26 C C6 ANP . . . D 4 34.147 23.416 9.23 1 37.01 ? C6 ANP 401 A 1 HETATM 27 N N6 ANP . . . D 4 35.532 23.571 8.739 1 47.18 ? N6 ANP 401 A 1 HETATM 28 N N1 ANP . . . D 4 33.465 22.513 8.579 1 42.93 ? N1 ANP 401 A 1 HETATM 29 C C2 ANP . . . D 4 32.144 22.263 8.917 1 49.38 ? C2 ANP 401 A 1 HETATM 30 N N3 ANP . . . D 4 31.508 22.918 9.92 1 35.89 ? N3 ANP 401 A 1 HETATM 31 C C4 ANP . . . D 4 32.231 23.82 10.544 1 35.61 ? C4 ANP 401 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 258 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #