data_8K6F
#
_model_server_result.job_id            MFmL4I_RrKx09JeallHLaA 
_model_server_result.datetime_utc      '2025-02-24 03:08:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8k6f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":401}' 
#
_entry.id    8K6F 
#
_exptl.entry_id    8K6F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.3 
_cell.angle_gamma         90 
_cell.entry_id            8K6F 
_cell.length_a            54.69 
_cell.length_b            214.227 
_cell.length_c            79.563 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8K6F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 H N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 132 n n 
PG O2G ATP sing 133 n n 
PG O3G ATP sing 134 n n 
PG O3B ATP sing 135 n n 
O2G HOG2 ATP sing 136 n n 
O3G HOG3 ATP sing 137 n n 
PB O1B ATP doub 138 n n 
PB O2B ATP sing 139 n n 
PB O3B ATP sing 140 n n 
PB O3A ATP sing 141 n n 
O2B HOB2 ATP sing 142 n n 
PA O1A ATP doub 143 n n 
PA O2A ATP sing 144 n n 
PA O3A ATP sing 145 n n 
PA O5' ATP sing 146 n n 
O2A HOA2 ATP sing 147 n n 
O5' C5' ATP sing 148 n n 
C5' C4' ATP sing 149 n n 
C5' "H5'1" ATP sing 150 n n 
C5' "H5'2" ATP sing 151 n n 
C4' O4' ATP sing 152 n n 
C4' C3' ATP sing 153 n n 
C4' H4' ATP sing 154 n n 
O4' C1' ATP sing 155 n n 
C3' O3' ATP sing 156 n n 
C3' C2' ATP sing 157 n n 
C3' H3' ATP sing 158 n n 
O3' HO3' ATP sing 159 n n 
C2' O2' ATP sing 160 n n 
C2' C1' ATP sing 161 n n 
C2' H2' ATP sing 162 n n 
O2' HO2' ATP sing 163 n n 
C1' N9 ATP sing 164 n n 
C1' H1' ATP sing 165 n n 
N9 C8 ATP sing 166 n y 
N9 C4 ATP sing 167 n y 
C8 N7 ATP doub 168 n y 
C8 H8 ATP sing 169 n n 
N7 C5 ATP sing 170 n y 
C5 C6 ATP sing 171 n y 
C5 C4 ATP doub 172 n y 
C6 N6 ATP sing 173 n n 
C6 N1 ATP doub 174 n y 
N6 HN61 ATP sing 175 n n 
N6 HN62 ATP sing 176 n n 
N1 C2 ATP sing 177 n y 
C2 N3 ATP doub 178 n y 
C2 H2 ATP sing 179 n n 
N3 C4 ATP sing 180 n y 
#
_atom_sites.entry_id                     8K6F 
_atom_sites.fract_transf_matrix[1][1]    0.018285 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000096 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.004668 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012569 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 4 ATP A 1 401 402 ATP ATP . 
H 4 ATP B 1 401 402 ATP ATP . 
I 5 AR6 D 1 401 401 AR6 AR6 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . H 4 21.318 53.42 18.803 1 81.1 ? PG ATP 401 B 1 
HETATM 2 O O1G ATP . . . H 4 20.473 53.988 19.906 1 75.7 ? O1G ATP 401 B 1 
HETATM 3 O O2G ATP . . . H 4 22.087 54.45 18.02 1 48.68 ? O2G ATP 401 B 1 
HETATM 4 O O3G ATP . . . H 4 22.151 52.261 19.254 1 59.54 ? O3G ATP 401 B 1 
HETATM 5 P PB ATP . . . H 4 19.024 53.457 17.104 1 65.83 ? PB ATP 401 B 1 
HETATM 6 O O1B ATP . . . H 4 18.981 54.85 17.602 1 68.46 ? O1B ATP 401 B 1 
HETATM 7 O O2B ATP . . . H 4 17.806 52.61 17.275 1 56.43 ? O2B ATP 401 B 1 
HETATM 8 O O3B ATP . . . H 4 20.299 52.725 17.76 1 69.82 ? O3B ATP 401 B 1 
HETATM 9 P PA ATP . . . H 4 19.825 54.865 14.834 1 64.12 ? PA ATP 401 B 1 
HETATM 10 O O1A ATP . . . H 4 20.31 54.491 13.465 1 59.8 ? O1A ATP 401 B 1 
HETATM 11 O O2A ATP . . . H 4 20.763 55.654 15.692 1 53.37 ? O2A ATP 401 B 1 
HETATM 12 O O3A ATP . . . H 4 19.368 53.509 15.55 1 59.2 ? O3A ATP 401 B 1 
HETATM 13 O O5' ATP . . . H 4 18.445 55.657 14.695 1 55.71 ? O5' ATP 401 B 1 
HETATM 14 C C5' ATP . . . H 4 17.514 55.328 13.668 1 59.45 ? C5' ATP 401 B 1 
HETATM 15 C C4' ATP . . . H 4 16.441 56.396 13.602 1 55.05 ? C4' ATP 401 B 1 
HETATM 16 O O4' ATP . . . H 4 16.958 57.636 13.133 1 53.09 ? O4' ATP 401 B 1 
HETATM 17 C C3' ATP . . . H 4 15.342 56.05 12.622 1 59.62 ? C3' ATP 401 B 1 
HETATM 18 O O3' ATP . . . H 4 14.127 55.834 13.326 1 59.6 ? O3' ATP 401 B 1 
HETATM 19 C C2' ATP . . . H 4 15.162 57.271 11.771 1 53.5 ? C2' ATP 401 B 1 
HETATM 20 O O2' ATP . . . H 4 13.789 57.58 11.613 1 64.74 ? O2' ATP 401 B 1 
HETATM 21 C C1' ATP . . . H 4 15.842 58.328 12.591 1 50.39 ? C1' ATP 401 B 1 
HETATM 22 N N9 ATP . . . H 4 16.176 59.553 11.823 1 56.34 ? N9 ATP 401 B 1 
HETATM 23 C C8 ATP . . . H 4 15.698 60.762 12.167 1 56.17 ? C8 ATP 401 B 1 
HETATM 24 N N7 ATP . . . H 4 16.137 61.718 11.325 1 53.38 ? N7 ATP 401 B 1 
HETATM 25 C C5 ATP . . . H 4 16.916 61.121 10.424 1 56.68 ? C5 ATP 401 B 1 
HETATM 26 C C6 ATP . . . H 4 17.687 61.581 9.267 1 60.93 ? C6 ATP 401 B 1 
HETATM 27 N N6 ATP . . . H 4 17.696 62.888 8.922 1 62.96 ? N6 ATP 401 B 1 
HETATM 28 N N1 ATP . . . H 4 18.37 60.655 8.575 1 60.62 ? N1 ATP 401 B 1 
HETATM 29 C C2 ATP . . . H 4 18.359 59.36 8.918 1 57.9 ? C2 ATP 401 B 1 
HETATM 30 N N3 ATP . . . H 4 17.676 58.877 9.968 1 49.17 ? N3 ATP 401 B 1 
HETATM 31 C C4 ATP . . . H 4 16.945 59.694 10.747 1 52.01 ? C4 ATP 401 B 1 
HETATM 32 H "H5'1" ATP . . . H 4 17.06 54.358 13.881 1 71.11 ? "H5'1" ATP 401 B 1 
HETATM 33 H "H5'2" ATP . . . H 4 18.009 55.272 12.697 1 71.11 ? "H5'2" ATP 401 B 1 
HETATM 34 H H4' ATP . . . H 4 16.002 56.522 14.602 1 65.83 ? H4' ATP 401 B 1 
HETATM 35 H H3' ATP . . . H 4 15.617 55.185 12.002 1 71.3 ? H3' ATP 401 B 1 
HETATM 36 H HO3' ATP . . . H 4 13.4 55.749 12.694 1 71.29 ? HO3' ATP 401 B 1 
HETATM 37 H H2' ATP . . . H 4 15.663 57.131 10.804 1 63.97 ? H2' ATP 401 B 1 
HETATM 38 H HO2' ATP . . . H 4 13.634 57.814 10.69 1 77.45 ? HO2' ATP 401 B 1 
HETATM 39 H H1' ATP . . . H 4 15.163 58.595 13.412 1 60.23 ? H1' ATP 401 B 1 
HETATM 40 H H8 ATP . . . H 4 15.043 60.95 13.009 1 67.17 ? H8 ATP 401 B 1 
HETATM 41 H HN61 ATP . . . H 4 18.229 63.197 8.121 1 75.32 ? HN61 ATP 401 B 1 
HETATM 42 H HN62 ATP . . . H 4 17.169 63.556 9.466 1 75.32 ? HN62 ATP 401 B 1 
HETATM 43 H H2 ATP . . . H 4 18.933 58.674 8.311 1 69.25 ? H2 ATP 401 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    29 
_model_server_stats.query_time_ms           293 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#