data_8K6J # _model_server_result.job_id NYsBMaLhaUvyCbNBx_f9jQ _model_server_result.datetime_utc '2024-10-15 05:22:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8k6j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":504}' # _entry.id 8K6J # _exptl.entry_id 8K6J _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 863.343 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8K6J _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8K6J _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 226 A CYS 226 1_555 E S2 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? covale ? covale2 C CB CYS 52 C CYS 52 1_555 H CBB HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale3 C CB CYS 55 C CYS 55 1_555 H CBC HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale4 C N TYR 115 C TYR 115 1_555 H O2D HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? covale ? covale5 C SG CYS 201 C CYS 201 1_555 G CAB HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale6 C SG CYS 204 C CYS 204 1_555 G CBC HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.764 ? covale ? covale7 C SG CYS 343 C CYS 343 1_555 F CAB HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale8 C SG CYS 346 C CYS 346 1_555 F CBC HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.763 ? covale ? covale9 C CG ASP 375 C ASP 375 1_555 G O1D HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.376 ? covale ? covale10 C CG1 ILE 393 C ILE 393 1_555 F O2D HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.381 ? metalc ? metalc1 A SG CYS 216 A CYS 216 1_555 E FE1 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc2 A SG CYS 216 A CYS 216 1_555 E FE4 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc3 A SG CYS 222 A CYS 222 1_555 E FE3 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc4 A SG CYS 226 A CYS 226 1_555 E FE1 F3S . A F3S 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc5 C NE2 HIS 56 C HIS 56 1_555 H FE HEC . C HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 C NE2 HIS 205 C HIS 205 1_555 G FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc7 C NE2 HIS 347 C HIS 347 1_555 F FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 540 n n C1 C6 U10 doub 541 n n C1 C1M U10 sing 542 n n C2 C3 U10 sing 543 n n C2 O2 U10 doub 544 n n C3 C4 U10 doub 545 n n C3 O3 U10 sing 546 n n C4 C5 U10 sing 547 n n C4 O4 U10 sing 548 n n C5 C6 U10 sing 549 n n C5 O5 U10 doub 550 n n C6 C7 U10 sing 551 n n C1M H1M1 U10 sing 552 n n C1M H1M2 U10 sing 553 n n C1M H1M3 U10 sing 554 n n C3M O3 U10 sing 555 n n C3M H3M1 U10 sing 556 n n C3M H3M2 U10 sing 557 n n C3M H3M3 U10 sing 558 n n C4M O4 U10 sing 559 n n C4M H4M1 U10 sing 560 n n C4M H4M2 U10 sing 561 n n C4M H4M3 U10 sing 562 n n C7 C8 U10 sing 563 n n C7 H71 U10 sing 564 n n C7 H72 U10 sing 565 n n C8 C9 U10 doub 566 e n C8 H8 U10 sing 567 n n C9 C10 U10 sing 568 n n C9 C11 U10 sing 569 n n C10 H101 U10 sing 570 n n C10 H102 U10 sing 571 n n C10 H103 U10 sing 572 n n C11 C12 U10 sing 573 n n C11 H111 U10 sing 574 n n C11 H112 U10 sing 575 n n C12 C13 U10 sing 576 n n C12 H121 U10 sing 577 n n C12 H122 U10 sing 578 n n C13 C14 U10 doub 579 e n C13 H13 U10 sing 580 n n C14 C15 U10 sing 581 n n C14 C16 U10 sing 582 n n C15 H151 U10 sing 583 n n C15 H152 U10 sing 584 n n C15 H153 U10 sing 585 n n C16 C17 U10 sing 586 n n C16 H161 U10 sing 587 n n C16 H162 U10 sing 588 n n C17 C18 U10 sing 589 n n C17 H171 U10 sing 590 n n C17 H172 U10 sing 591 n n C18 C19 U10 doub 592 e n C18 H18 U10 sing 593 n n C19 C20 U10 sing 594 n n C19 C21 U10 sing 595 n n C20 H201 U10 sing 596 n n C20 H202 U10 sing 597 n n C20 H203 U10 sing 598 n n C21 C22 U10 sing 599 n n C21 H211 U10 sing 600 n n C21 H212 U10 sing 601 n n C22 C23 U10 sing 602 n n C22 H221 U10 sing 603 n n C22 H222 U10 sing 604 n n C23 C24 U10 doub 605 e n C23 H23 U10 sing 606 n n C24 C25 U10 sing 607 n n C24 C26 U10 sing 608 n n C25 H251 U10 sing 609 n n C25 H252 U10 sing 610 n n C25 H253 U10 sing 611 n n C26 C27 U10 sing 612 n n C26 H261 U10 sing 613 n n C26 H262 U10 sing 614 n n C27 C28 U10 sing 615 n n C27 H271 U10 sing 616 n n C27 H272 U10 sing 617 n n C28 C29 U10 doub 618 e n C28 H28 U10 sing 619 n n C29 C30 U10 sing 620 n n C29 C31 U10 sing 621 n n C30 H301 U10 sing 622 n n C30 H302 U10 sing 623 n n C30 H303 U10 sing 624 n n C31 C32 U10 sing 625 n n C31 H311 U10 sing 626 n n C31 H312 U10 sing 627 n n C32 C33 U10 sing 628 n n C32 H321 U10 sing 629 n n C32 H322 U10 sing 630 n n C33 C34 U10 doub 631 e n C33 H33 U10 sing 632 n n C34 C35 U10 sing 633 n n C34 C36 U10 sing 634 n n C35 H351 U10 sing 635 n n C35 H352 U10 sing 636 n n C35 H353 U10 sing 637 n n C36 C37 U10 sing 638 n n C36 H361 U10 sing 639 n n C36 H362 U10 sing 640 n n C37 C38 U10 sing 641 n n C37 H371 U10 sing 642 n n C37 H372 U10 sing 643 n n C38 C39 U10 doub 644 e n C38 H38 U10 sing 645 n n C39 C40 U10 sing 646 n n C39 C41 U10 sing 647 n n C40 H401 U10 sing 648 n n C40 H402 U10 sing 649 n n C40 H403 U10 sing 650 n n C41 C42 U10 sing 651 n n C41 H411 U10 sing 652 n n C41 H412 U10 sing 653 n n C42 C43 U10 sing 654 n n C42 H421 U10 sing 655 n n C42 H422 U10 sing 656 n n C43 C44 U10 doub 657 e n C43 H43 U10 sing 658 n n C44 C45 U10 sing 659 n n C44 C46 U10 sing 660 n n C45 H451 U10 sing 661 n n C45 H452 U10 sing 662 n n C45 H453 U10 sing 663 n n C46 C47 U10 sing 664 n n C46 H461 U10 sing 665 n n C46 H462 U10 sing 666 n n C47 C48 U10 sing 667 n n C47 H471 U10 sing 668 n n C47 H472 U10 sing 669 n n C48 C49 U10 doub 670 e n C48 H48 U10 sing 671 n n C49 C50 U10 sing 672 n n C49 C51 U10 sing 673 n n C50 H501 U10 sing 674 n n C50 H502 U10 sing 675 n n C50 H503 U10 sing 676 n n C51 C52 U10 sing 677 n n C51 H511 U10 sing 678 n n C51 H512 U10 sing 679 n n C52 C53 U10 sing 680 n n C52 H521 U10 sing 681 n n C52 H522 U10 sing 682 n n C53 C54 U10 doub 683 n n C53 H53 U10 sing 684 n n C54 C55 U10 sing 685 n n C54 C56 U10 sing 686 n n C55 H551 U10 sing 687 n n C55 H552 U10 sing 688 n n C55 H553 U10 sing 689 n n C56 H561 U10 sing 690 n n C56 H562 U10 sing 691 n n C56 H563 U10 sing 692 n n # _atom_sites.entry_id 8K6J _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 FAD A 1 601 601 FAD FAD . E 5 F3S A 1 602 602 F3S F3S . F 6 HEC C 1 501 501 HEC HEC . G 6 HEC C 1 502 502 HEC HEC . H 6 HEC C 1 503 503 HEC HEC . I 7 U10 C 1 504 504 U10 U10 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . I 7 123.539 79.686 117.874 1 167.11 ? C1 U10 504 C 1 HETATM 2 C C2 U10 . . . I 7 124.28 78.766 118.601 1 170.24 ? C2 U10 504 C 1 HETATM 3 C C3 U10 . . . I 7 124.686 77.576 118.008 1 172.27 ? C3 U10 504 C 1 HETATM 4 C C4 U10 . . . I 7 124.313 77.31 116.692 1 170.92 ? C4 U10 504 C 1 HETATM 5 C C5 U10 . . . I 7 123.574 78.233 115.966 1 163.65 ? C5 U10 504 C 1 HETATM 6 C C6 U10 . . . I 7 123.182 79.425 116.556 1 162.28 ? C6 U10 504 C 1 HETATM 7 C C1M U10 . . . I 7 123.126 80.965 118.539 1 167.86 ? C1M U10 504 C 1 HETATM 8 C C3M U10 . . . I 7 126.906 77.608 118.627 1 162.23 ? C3M U10 504 C 1 HETATM 9 C C4M U10 . . . I 7 124.132 75.015 116.707 1 166.32 ? C4M U10 504 C 1 HETATM 10 C C7 U10 . . . I 7 122.08 80.22 115.894 1 162.4 ? C7 U10 504 C 1 HETATM 11 C C8 U10 . . . I 7 122.627 81.445 115.198 1 161.4 ? C8 U10 504 C 1 HETATM 12 C C9 U10 . . . I 7 122.921 81.444 113.759 1 161.93 ? C9 U10 504 C 1 HETATM 13 C C10 U10 . . . I 7 123.725 80.333 113.157 1 161.28 ? C10 U10 504 C 1 HETATM 14 C C11 U10 . . . I 7 122.426 82.579 112.894 1 163.23 ? C11 U10 504 C 1 HETATM 15 C C12 U10 . . . I 7 123.466 82.932 111.839 1 162.5 ? C12 U10 504 C 1 HETATM 16 C C13 U10 . . . I 7 122.987 84.128 111.051 1 162.91 ? C13 U10 504 C 1 HETATM 17 C C14 U10 . . . I 7 123.907 85.229 110.737 1 162.24 ? C14 U10 504 C 1 HETATM 18 C C15 U10 . . . I 7 125.312 85.187 111.257 1 162.3 ? C15 U10 504 C 1 HETATM 19 C C16 U10 . . . I 7 123.451 86.397 109.893 1 161.62 ? C16 U10 504 C 1 HETATM 20 C C17 U10 . . . I 7 121.991 86.21 109.501 1 163.45 ? C17 U10 504 C 1 HETATM 21 C C18 U10 . . . I 7 121.737 86.776 108.125 1 160.21 ? C18 U10 504 C 1 HETATM 22 C C19 U10 . . . I 7 120.359 86.868 107.619 1 162.08 ? C19 U10 504 C 1 HETATM 23 C C20 U10 . . . I 7 119.211 86.652 108.557 1 164.76 ? C20 U10 504 C 1 HETATM 24 C C21 U10 . . . I 7 120.092 87.169 106.165 1 161.77 ? C21 U10 504 C 1 HETATM 25 C C22 U10 . . . I 7 118.85 88.043 106.031 1 161.35 ? C22 U10 504 C 1 HETATM 26 C C23 U10 . . . I 7 119.185 89.458 106.434 1 164.57 ? C23 U10 504 C 1 HETATM 27 C C24 U10 . . . I 7 118.785 90.58 105.575 1 163.61 ? C24 U10 504 C 1 HETATM 28 C C25 U10 . . . I 7 117.773 90.362 104.491 1 160.83 ? C25 U10 504 C 1 HETATM 29 C C26 U10 . . . I 7 119.395 91.944 105.788 1 159.73 ? C26 U10 504 C 1 HETATM 30 C C27 U10 . . . I 7 119.043 92.862 104.623 1 162.24 ? C27 U10 504 C 1 HETATM 31 C C28 U10 . . . I 7 120.208 92.91 103.665 1 162.84 ? C28 U10 504 C 1 HETATM 32 C C29 U10 . . . I 7 120.211 93.854 102.54 1 163.42 ? C29 U10 504 C 1 HETATM 33 C C30 U10 . . . I 7 119.172 94.931 102.47 1 163.03 ? C30 U10 504 C 1 HETATM 34 C C31 U10 . . . I 7 121.26 93.747 101.461 1 159.67 ? C31 U10 504 C 1 HETATM 35 O O2 U10 . . . I 7 124.233 78.826 119.828 1 169.8 ? O2 U10 504 C 1 HETATM 36 O O3 U10 . . . I 7 125.649 76.979 118.497 1 171.7 ? O3 U10 504 C 1 HETATM 37 O O4 U10 . . . I 7 124.586 76.234 116.159 1 173.2 ? O4 U10 504 C 1 HETATM 38 O O5 U10 . . . I 7 122.927 77.823 115.006 1 161.57 ? O5 U10 504 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 576 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 38 #